Rh4AG240900

Belongs to the TCTP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0011211
Physical Location & Seq
Reverse (-)
54659277 .. 54661715
2439 bp
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UTR
Exon/CDS
Intron
Rh4AG240900.1

Sequence Viewer

Length: 435 bp
ATGGTGTGGTTCAAATTATTTGGCTTGCAGTGGGTTGTTCAAGGAGCAGTTGATGTAGACATTGGTGCAAATCCTTCTGCTGAAGGTGCAGATGCTGATGAGGGTGTTGATGATCAAACTGCTAAGGTGGTTGACATTGTTGACACTTTCAGACTTCAGGAGCAACCTCCTTTTGATAAGAAGCAGTTTGTCACATGGGTGAAGAGGTACATCAAATTGTTGACCCCAAAGCTTGAGGGAGAGCATCAGGAGACATTTAAGAAGAACATTGAGGGAGCAACCAAGTTTCTGCTTTCCAAGCTCAGTGACCTCCAATTCTTCGTGGGGGAGAGCATGGGTGATGATGCAGCTTTGGTCTTTGCCTACTACAAAGAGGGTGCCACTGACCCAACCTTTATCTACTTCGCCCATGGTTTGAAGGAGGTCAAGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCTP

Protein Analysis

144

Amino Acids

16.22

Weight (kDa)

4.8

Isoelectric Point (pI)

15.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCTP PF00838 10 - 140 4.1e-40 Translationally controlled tumour protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05540 AT3G16640
fragaria_vesca FvH4_4g18300
malus_domestica MD13G1167500.v1.1 MD13G1167600.v1.1
prunus_persica Prupe.1G134900_v2.0.a1 Prupe.1G134900_v2.0.a1
pyrus_communis pycom13g14320
rosa_chinensis RchiOBHm_Chr4g0422701
rosa_laevigata RLG00000007606
rosa_multiflora Rmu_sc0000830.1_g000051
rosa_roxburghii Rroxscaffold_5G00364620
rosa_rugosa Rorug04G0181000
rosa_samantha Rh4AG240900 Rh4BG244100 Rh4CG254900 Rh4DG239200 Rh5CG492100
rosa_wichuraiana Rw4G020790 Rw4G020800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 377
AccI GTMKAC 1 cut(s) 57
AcuI CTGAAG 2 cut(s) 102, 140
AfaI GTAC 1 cut(s) 209
AgsI TTSAA 3 cut(s) 13, 41, 418
AleI CACNNNNGTG 1 cut(s) 197
AluBI AGCT 3 cut(s) 232, 301, 350
AluI AGCT 3 cut(s) 232, 301, 350
Alw26I GTCTC 1 cut(s) 245
AlwNI CAGNNNCTG 1 cut(s) 95
ApeKI GCWGC 1 cut(s) 347
AsuHPI GGTGA 2 cut(s) 211, 350
BanI GGYRCC 1 cut(s) 377
BbvI GCAGC 1 cut(s) 359
BclI TGATCA 1 cut(s) 112
BcoDI GTCTC 1 cut(s) 245
BisI GCNGC 1 cut(s) 348
BlsI GCNGC 1 cut(s) 349
BmiI GGNNCC 1 cut(s) 379
BmsI GCATC 3 cut(s) 82, 253, 334
Bpu10I CCTNAGC 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 409
BsaXI ACNNNNNCTCC 1 cut(s) 413
BseDI CCNNGG 1 cut(s) 409
BseMII CTCAG 1 cut(s) 316
BseXI GCAGC 1 cut(s) 359
BsgI GTGCAG 1 cut(s) 108
BshNI GGYRCC 1 cut(s) 377
BsmAI GTCTC 1 cut(s) 245
Bsp143I GATC 1 cut(s) 112
Bsp19I CCATGG 1 cut(s) 409
BspCNI CTCAG 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 379
BspT107I GGYRCC 1 cut(s) 377
BssECI CCNNGG 1 cut(s) 409
BssMI GATC 1 cut(s) 112
BssT1I CCWWGG 1 cut(s) 409
Bst6I CTCTTC 1 cut(s) 197
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 2 cut(s) 123, 302
BstDSI CCRYGG 1 cut(s) 409
BstKTI GATC 1 cut(s) 115
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 1 cut(s) 112
BstMWI GCNNNNNNNGC 2 cut(s) 86, 298
BstV1I GCAGC 1 cut(s) 359
BtgI CCRYGG 1 cut(s) 409
BtsI GCAGTG 1 cut(s) 35
BtsIMutI CAGTG 3 cut(s) 35, 310, 381
Cac8I GCNNGC 1 cut(s) 26
CaiI CAGNNNCTG 1 cut(s) 95
Csp6I GTAC 1 cut(s) 208
CviAII CATG 3 cut(s) 195, 334, 410
CviJI RGCY 4 cut(s) 24, 232, 301, 350
CviKI_1 RGCY 4 cut(s) 24, 232, 301, 350
CviQI GTAC 1 cut(s) 208
DdeI CTNAG 2 cut(s) 123, 302
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
Eco130I CCWWGG 1 cut(s) 409
Eco57I CTGAAG 2 cut(s) 102, 140
EcoT14I CCWWGG 1 cut(s) 409
ErhI CCWWGG 1 cut(s) 409
FaeI CATG 3 cut(s) 198, 337, 413
FaiI YATR 3 cut(s) 196, 335, 411
FatI CATG 3 cut(s) 194, 333, 409
FbaI TGATCA 1 cut(s) 112
FblI GTMKAC 1 cut(s) 57
Fnu4HI GCNGC 1 cut(s) 348
Fsp4HI GCNGC 1 cut(s) 348
GluI GCNGC 1 cut(s) 348
Hin1II CATG 3 cut(s) 198, 337, 413
HincII GTYRAC 3 cut(s) 133, 142, 222
HindII GTYRAC 3 cut(s) 133, 142, 222
HindIII AAGCTT 1 cut(s) 230
HphI GGTGA 2 cut(s) 211, 350
Hpy166II GTNNAC 4 cut(s) 58, 133, 142, 222
Hpy188I TCNGA 1 cut(s) 152
Hpy188III TCNNGA 2 cut(s) 158, 248
Hpy8I GTNNAC 4 cut(s) 58, 133, 142, 222
HpyAV CCTTC 3 cut(s) 77, 84, 412
HpyCH4V TGCA 4 cut(s) 28, 68, 89, 347
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 298
HpyF3I CTNAG 2 cut(s) 123, 302
Hsp92II CATG 3 cut(s) 198, 337, 413
Ksp22I TGATCA 1 cut(s) 112
Kzo9I GATC 1 cut(s) 112
LmnI GCTCC 3 cut(s) 44, 160, 275
LpnPI CCDG 2 cut(s) 143, 233
Lsp1109I GCAGC 1 cut(s) 359
LweI GCATC 3 cut(s) 82, 253, 334
MaeIII GTNAC 2 cut(s) 190, 305
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MboII GAAGA 3 cut(s) 214, 274, 310
MluCI AATT 3 cut(s) 14, 215, 314
MnlI CCTC 8 cut(s) 94, 177, 198, 229, 265, 320, 367, 415
MseI TTAA 1 cut(s) 258
MslI CAYNNNNRTG 1 cut(s) 197
MwoI GCNNNNNNNGC 2 cut(s) 86, 298
NcoI CCATGG 1 cut(s) 409
NdeII GATC 1 cut(s) 112
NlaIII CATG 3 cut(s) 198, 337, 413
NlaIV GGNNCC 1 cut(s) 379
NmuCI GTSAC 2 cut(s) 190, 305
OliI CACNNNNGTG 1 cut(s) 197
PkrI GCNGC 1 cut(s) 349
PspN4I GGNNCC 1 cut(s) 379
PstNI CAGNNNCTG 1 cut(s) 95
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
RseI CAYNNNNRTG 1 cut(s) 197
SaqAI TTAA 1 cut(s) 258
SatI GCNGC 1 cut(s) 348
Sau3AI GATC 1 cut(s) 112
SfaNI GCATC 3 cut(s) 82, 253, 334
SmiMI CAYNNNNRTG 1 cut(s) 197
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 3 cut(s) 14, 215, 314
StyI CCWWGG 1 cut(s) 409
TasI AATT 3 cut(s) 14, 215, 314
Tru1I TTAA 1 cut(s) 258
Tru9I TTAA 1 cut(s) 258
TscAI CASTG 3 cut(s) 35, 310, 388
TseFI GTSAC 2 cut(s) 190, 305
TseI GCWGC 1 cut(s) 347
Tsp45I GTSAC 2 cut(s) 190, 305
TspRI CASTG 3 cut(s) 35, 310, 388
XmiI GTMKAC 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.