Rh4DG239200

Belongs to the TCTP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0011211
Physical Location & Seq
Reverse (-)
44651047 .. 44653165
2119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG239200.1

Sequence Viewer

Length: 420 bp
ATGATTGGCTTGCAGTGGGTTGTTCAAGGAGCAGTTGATGTAGACATCGGTGCAAATCCTTCTGCTGAAGGTGCAGATGCTGATGAGGGTGTTGATGATCAAACTGTTAAGGTGGTGGACATTGTTGACACTTTCAGACTTCAGGAGCAACCTCCTTTTGATAAGAAGCAGTTTGTCACATGGGTGAAGAGGTATATCAAATTGCTGACCCCAAAGCTTGAGGGAGAGCATCAGGAGACATTTAAGAAGAACATTGAGGGAGCAACCAAGTTTCTGCTTTCCAAGCTCAGTGACCTCCAGTTCTTCGTAGGGGAGAGCATGGGTGATGATGCAGCTTTGGTCTTTGCCTACTACAAAGAGGGTGCCACTGACCCAACCTTTATTTACTTCGCCCATGGTTTGAAGGAGGTCAAGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCTP

Protein Analysis

139

Amino Acids

15.54

Weight (kDa)

4.69

Isoelectric Point (pI)

17.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCTP PF00838 5 - 135 2.1e-40 Translationally controlled tumour protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05540 AT3G16640
fragaria_vesca FvH4_4g18300
malus_domestica MD13G1167500.v1.1 MD13G1167600.v1.1
prunus_persica Prupe.1G134900_v2.0.a1 Prupe.1G134900_v2.0.a1
pyrus_communis pycom13g14320
rosa_chinensis RchiOBHm_Chr4g0422701
rosa_laevigata RLG00000007606
rosa_multiflora Rmu_sc0000830.1_g000051
rosa_roxburghii Rroxscaffold_5G00364620
rosa_rugosa Rorug04G0181000
rosa_samantha Rh4AG240900 Rh4BG244100 Rh4CG254900 Rh4DG239200 Rh5CG492100
rosa_wichuraiana Rw4G020790 Rw4G020800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 362
AccI GTMKAC 1 cut(s) 42
AcuI CTGAAG 2 cut(s) 87, 125
AgsI TTSAA 2 cut(s) 26, 403
AleI CACNNNNGTG 1 cut(s) 182
AluBI AGCT 3 cut(s) 217, 286, 335
AluI AGCT 3 cut(s) 217, 286, 335
Alw26I GTCTC 1 cut(s) 230
AlwNI CAGNNNCTG 1 cut(s) 80
ApeKI GCWGC 1 cut(s) 332
AsuHPI GGTGA 2 cut(s) 196, 335
BanI GGYRCC 1 cut(s) 362
BbvI GCAGC 1 cut(s) 344
BclI TGATCA 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 230
BisI GCNGC 1 cut(s) 333
BlsI GCNGC 1 cut(s) 334
BmiI GGNNCC 1 cut(s) 364
BmsI GCATC 3 cut(s) 67, 238, 319
BpmI CTGGAG 1 cut(s) 281
BpuEI CTTGAG 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 394
BsaXI ACNNNNNCTCC 1 cut(s) 398
Bse1I ACTGG 1 cut(s) 298
BseDI CCNNGG 1 cut(s) 394
BseMII CTCAG 1 cut(s) 301
BseNI ACTGG 1 cut(s) 298
BseXI GCAGC 1 cut(s) 344
BsgI GTGCAG 1 cut(s) 93
BshNI GGYRCC 1 cut(s) 362
BsmAI GTCTC 1 cut(s) 230
Bsp143I GATC 1 cut(s) 97
Bsp19I CCATGG 1 cut(s) 394
BspCNI CTCAG 1 cut(s) 300
BspLI GGNNCC 1 cut(s) 364
BspT107I GGYRCC 1 cut(s) 362
BsrI ACTGG 1 cut(s) 298
BssECI CCNNGG 1 cut(s) 394
BssMI GATC 1 cut(s) 97
BssT1I CCWWGG 1 cut(s) 394
Bst4CI ACNGT 1 cut(s) 106
Bst6I CTCTTC 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 287
BstDSI CCRYGG 1 cut(s) 394
BstKTI GATC 1 cut(s) 100
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 1 cut(s) 97
BstMWI GCNNNNNNNGC 2 cut(s) 71, 283
BstV1I GCAGC 1 cut(s) 344
BtgI CCRYGG 1 cut(s) 394
BtsI GCAGTG 1 cut(s) 20
BtsIMutI CAGTG 3 cut(s) 20, 295, 366
Cac8I GCNNGC 1 cut(s) 11
CaiI CAGNNNCTG 1 cut(s) 80
CviAII CATG 3 cut(s) 180, 319, 395
CviJI RGCY 4 cut(s) 9, 217, 286, 335
CviKI_1 RGCY 4 cut(s) 9, 217, 286, 335
DdeI CTNAG 1 cut(s) 287
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
Eco130I CCWWGG 1 cut(s) 394
Eco57I CTGAAG 2 cut(s) 87, 125
EcoT14I CCWWGG 1 cut(s) 394
ErhI CCWWGG 1 cut(s) 394
FaeI CATG 3 cut(s) 183, 322, 398
FaiI YATR 4 cut(s) 181, 195, 320, 396
FatI CATG 3 cut(s) 179, 318, 394
FbaI TGATCA 1 cut(s) 97
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 1 cut(s) 333
Fsp4HI GCNGC 1 cut(s) 333
GluI GCNGC 1 cut(s) 333
GsuI CTGGAG 1 cut(s) 281
Hin1II CATG 3 cut(s) 183, 322, 398
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HindIII AAGCTT 1 cut(s) 215
HphI GGTGA 2 cut(s) 196, 335
Hpy166II GTNNAC 3 cut(s) 43, 118, 127
Hpy188I TCNGA 1 cut(s) 137
Hpy188III TCNNGA 2 cut(s) 143, 233
Hpy8I GTNNAC 3 cut(s) 43, 118, 127
HpyAV CCTTC 3 cut(s) 62, 69, 397
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4V TGCA 4 cut(s) 13, 53, 74, 332
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 283
HpyF3I CTNAG 1 cut(s) 287
Hsp92II CATG 3 cut(s) 183, 322, 398
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 1 cut(s) 97
LmnI GCTCC 3 cut(s) 29, 145, 260
LpnPI CCDG 3 cut(s) 128, 218, 311
Lsp1109I GCAGC 1 cut(s) 344
LweI GCATC 3 cut(s) 67, 238, 319
MaeIII GTNAC 2 cut(s) 175, 290
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 3 cut(s) 199, 259, 295
MluCI AATT 1 cut(s) 200
MnlI CCTC 8 cut(s) 79, 162, 183, 214, 250, 305, 352, 400
MseI TTAA 2 cut(s) 108, 243
MslI CAYNNNNRTG 1 cut(s) 182
MwoI GCNNNNNNNGC 2 cut(s) 71, 283
NcoI CCATGG 1 cut(s) 394
NdeII GATC 1 cut(s) 97
NlaIII CATG 3 cut(s) 183, 322, 398
NlaIV GGNNCC 1 cut(s) 364
NmuCI GTSAC 2 cut(s) 175, 290
OliI CACNNNNGTG 1 cut(s) 182
PkrI GCNGC 1 cut(s) 334
PspN4I GGNNCC 1 cut(s) 364
PstNI CAGNNNCTG 1 cut(s) 80
RseI CAYNNNNRTG 1 cut(s) 182
SaqAI TTAA 2 cut(s) 108, 243
SatI GCNGC 1 cut(s) 333
Sau3AI GATC 1 cut(s) 97
SfaNI GCATC 3 cut(s) 67, 238, 319
SmiMI CAYNNNNRTG 1 cut(s) 182
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 1 cut(s) 200
StyI CCWWGG 1 cut(s) 394
TaaI ACNGT 1 cut(s) 106
TasI AATT 1 cut(s) 200
Tru1I TTAA 2 cut(s) 108, 243
Tru9I TTAA 2 cut(s) 108, 243
TscAI CASTG 3 cut(s) 20, 295, 373
TseFI GTSAC 2 cut(s) 175, 290
TseI GCWGC 1 cut(s) 332
Tsp45I GTSAC 2 cut(s) 175, 290
TspRI CASTG 3 cut(s) 20, 295, 373
XmiI GTMKAC 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.