Rroxscaffold_5G00364620

Belongs to the TCTP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0011211
Physical Location & Seq
Reverse (-)
45804415 .. 45806456
2042 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00364620.1

Sequence Viewer

Length: 507 bp
ATGTTGGTTTACCAAGACCTCCTCACCGGCGATGAGCTTCTCTCGGACTCGTTTCCATACAGAGAGATCCACAATGGAGTATTGTGGGAGGTTGACGGAAAGTGGGTTGTTCAAGGAGCAGTTGATGTAGACATCGGTGCAAATCCTTCTGCTGAAGGTGCAGATGCTGATGAGGGTGTCGATGATCAAACTGTTAAGGTGGTTGACATTGTTGACACTTTCAGACTTCAGGAGCAACCTCCTTTTGATAAGAAGCAGTTTGTCACATGGGTGAAGAGGTACATCAAATTGCTGACACCAAAGCTTGAGGGAGAGCATCAGGAGACATTTAAGAAGAACATTGAGGGAGCAACCAAGTTTCTGCTTTCCAAGCTCAGTGACCTCCAATTCTTCGTGGGGGAGAGCATGGGTGATGATGCAGCTTTGGTCTTTGCCTACTACAAAGAGGGTGCCACTGACCCGACCTTTATTTACTTTGCCCATGGTTTGAAGGAGGTCAAGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCTP

Protein Analysis

168

Amino Acids

18.93

Weight (kDa)

4.54

Isoelectric Point (pI)

17.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCTP PF00838 1 - 164 1.4e-57 Translationally controlled tumour protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05540 AT3G16640
fragaria_vesca FvH4_4g18300
malus_domestica MD13G1167500.v1.1 MD13G1167600.v1.1
prunus_persica Prupe.1G134900_v2.0.a1 Prupe.1G134900_v2.0.a1
pyrus_communis pycom13g14320
rosa_chinensis RchiOBHm_Chr4g0422701
rosa_laevigata RLG00000007606
rosa_multiflora Rmu_sc0000830.1_g000051
rosa_roxburghii Rroxscaffold_5G00364620
rosa_rugosa Rorug04G0181000
rosa_samantha Rh4AG240900 Rh4BG244100 Rh4CG254900 Rh4DG239200 Rh5CG492100
rosa_wichuraiana Rw4G020790 Rw4G020800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 449
AccI GTMKAC 1 cut(s) 129
AclWI GGATC 1 cut(s) 61
AcuI CTGAAG 2 cut(s) 174, 212
AfaI GTAC 1 cut(s) 281
AgsI TTSAA 2 cut(s) 113, 490
AleI CACNNNNGTG 1 cut(s) 269
AluBI AGCT 4 cut(s) 37, 304, 373, 422
AluI AGCT 4 cut(s) 37, 304, 373, 422
Alw26I GTCTC 1 cut(s) 317
AlwI GGATC 1 cut(s) 61
AlwNI CAGNNNCTG 1 cut(s) 167
ApeKI GCWGC 1 cut(s) 419
AsuHPI GGTGA 3 cut(s) 16, 283, 422
BanI GGYRCC 1 cut(s) 449
BbvI GCAGC 1 cut(s) 431
BclI TGATCA 1 cut(s) 184
BcoDI GTCTC 1 cut(s) 317
BisI GCNGC 1 cut(s) 420
BlsI GCNGC 1 cut(s) 421
BmiI GGNNCC 1 cut(s) 451
BmsI GCATC 3 cut(s) 154, 325, 406
BplI GAGNNNNNCTC 2 cut(s) 26, 58
BpuEI CTTGAG 1 cut(s) 326
BsaJI CCNNGG 1 cut(s) 481
BsaXI ACNNNNNCTCC 1 cut(s) 485
Bse118I RCCGGY 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 481
BseMII CTCAG 1 cut(s) 388
BseRI GAGGAG 1 cut(s) 11
BseXI GCAGC 1 cut(s) 431
BsgI GTGCAG 1 cut(s) 180
BshNI GGYRCC 1 cut(s) 449
BsiSI CCGG 1 cut(s) 27
BsmAI GTCTC 1 cut(s) 317
Bsp143I GATC 2 cut(s) 66, 184
Bsp19I CCATGG 1 cut(s) 481
BspCNI CTCAG 1 cut(s) 387
BspLI GGNNCC 1 cut(s) 451
BspPI GGATC 1 cut(s) 61
BspT107I GGYRCC 1 cut(s) 449
BsrFI RCCGGY 1 cut(s) 26
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 481
BssMI GATC 2 cut(s) 66, 184
BssT1I CCWWGG 1 cut(s) 481
Bst4CI ACNGT 1 cut(s) 193
Bst6I CTCTTC 1 cut(s) 269
BstDEI CTNAG 1 cut(s) 374
BstDSI CCRYGG 1 cut(s) 481
BstKTI GATC 2 cut(s) 69, 187
BstMAI GTCTC 1 cut(s) 317
BstMBI GATC 2 cut(s) 66, 184
BstMWI GCNNNNNNNGC 2 cut(s) 158, 370
BstV1I GCAGC 1 cut(s) 431
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BtgI CCRYGG 1 cut(s) 481
BtgZI GCGATG 1 cut(s) 45
BtsIMutI CAGTG 2 cut(s) 382, 453
CaiI CAGNNNCTG 1 cut(s) 167
Cfr10I RCCGGY 1 cut(s) 26
Csp6I GTAC 1 cut(s) 280
CviAII CATG 3 cut(s) 267, 406, 482
CviJI RGCY 4 cut(s) 37, 304, 373, 422
CviKI_1 RGCY 4 cut(s) 37, 304, 373, 422
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 1 cut(s) 374
DpnI GATC 2 cut(s) 68, 186
DpnII GATC 2 cut(s) 66, 184
Eam1104I CTCTTC 1 cut(s) 269
EarI CTCTTC 1 cut(s) 269
Eco130I CCWWGG 1 cut(s) 481
Eco57I CTGAAG 2 cut(s) 174, 212
EcoT14I CCWWGG 1 cut(s) 481
ErhI CCWWGG 1 cut(s) 481
FaeI CATG 3 cut(s) 270, 409, 485
FaiI YATR 4 cut(s) 58, 268, 407, 483
FatI CATG 3 cut(s) 266, 405, 481
FbaI TGATCA 1 cut(s) 184
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 1 cut(s) 420
Fsp4HI GCNGC 1 cut(s) 420
GluI GCNGC 1 cut(s) 420
HapII CCGG 1 cut(s) 27
Hin1II CATG 3 cut(s) 270, 409, 485
HincII GTYRAC 3 cut(s) 94, 205, 214
HindII GTYRAC 3 cut(s) 94, 205, 214
HindIII AAGCTT 1 cut(s) 302
HinfI GANTC 1 cut(s) 47
HpaII CCGG 1 cut(s) 27
HphI GGTGA 3 cut(s) 16, 283, 422
Hpy166II GTNNAC 5 cut(s) 10, 94, 130, 205, 214
Hpy188I TCNGA 2 cut(s) 46, 224
Hpy188III TCNNGA 2 cut(s) 230, 320
Hpy8I GTNNAC 5 cut(s) 10, 94, 130, 205, 214
HpyAV CCTTC 3 cut(s) 149, 156, 484
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4V TGCA 3 cut(s) 140, 161, 419
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 370
HpyF3I CTNAG 1 cut(s) 374
Hsp92II CATG 3 cut(s) 270, 409, 485
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 2 cut(s) 66, 184
LmnI GCTCC 3 cut(s) 116, 232, 347
LpnPI CCDG 3 cut(s) 40, 215, 305
Lsp1109I GCAGC 1 cut(s) 431
LweI GCATC 3 cut(s) 154, 325, 406
MaeIII GTNAC 2 cut(s) 262, 377
MalI GATC 2 cut(s) 68, 186
MboI GATC 2 cut(s) 66, 184
MboII GAAGA 3 cut(s) 286, 346, 382
MflI RGATCY 1 cut(s) 66
MluCI AATT 2 cut(s) 287, 386
MlyI GAGTC 1 cut(s) 41
MseI TTAA 2 cut(s) 195, 330
MslI CAYNNNNRTG 1 cut(s) 269
MspI CCGG 1 cut(s) 27
MwoI GCNNNNNNNGC 2 cut(s) 158, 370
NcoI CCATGG 1 cut(s) 481
NdeII GATC 2 cut(s) 66, 184
NlaIII CATG 3 cut(s) 270, 409, 485
NlaIV GGNNCC 1 cut(s) 451
NmuCI GTSAC 2 cut(s) 262, 377
OliI CACNNNNGTG 1 cut(s) 269
PkrI GCNGC 1 cut(s) 421
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
PspN4I GGNNCC 1 cut(s) 451
PstNI CAGNNNCTG 1 cut(s) 167
PsuI RGATCY 1 cut(s) 66
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
RseI CAYNNNNRTG 1 cut(s) 269
SaqAI TTAA 2 cut(s) 195, 330
SatI GCNGC 1 cut(s) 420
Sau3AI GATC 2 cut(s) 66, 184
SchI GAGTC 1 cut(s) 41
SfaNI GCATC 3 cut(s) 154, 325, 406
SgrAI CRCCGGYG 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 2 cut(s) 287, 386
StyI CCWWGG 1 cut(s) 481
TaaI ACNGT 1 cut(s) 193
TaqI TCGA 1 cut(s) 180
TasI AATT 2 cut(s) 287, 386
Tru1I TTAA 2 cut(s) 195, 330
Tru9I TTAA 2 cut(s) 195, 330
TscAI CASTG 2 cut(s) 382, 460
TseFI GTSAC 2 cut(s) 262, 377
TseI GCWGC 1 cut(s) 419
Tsp45I GTSAC 2 cut(s) 262, 377
TspGWI ACGGA 1 cut(s) 111
TspRI CASTG 2 cut(s) 382, 460
XmiI GTMKAC 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.