MD13G1167600.v1.1

Belongs to the TCTP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0011211
Physical Location & Seq
Forward (+)
13571249 .. 13573362
2114 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1167600.v1.1.491

Sequence Viewer

Length: 507 bp
ATGTTGGTTTACCAAGACCTCCTCACCGGCGATGAGCTTCTCTCGGACTCGTTTCCATACAGGGAAATCCACAATGGAGTGCTCTGGGAGGTTGATGGCAAGTGGGTTGTTCAAGGAGCTGTTGATGTAGACATTGGTGCAAATCCATCTGCTGAAGGTGGAGGTGAGGATGAGGGTGTTGATGATCAAGCCGTCAAGGTTGTTGACATTGTTGACACATTTAGACTTCAGGAGCAACCTCCATACGACAAAAAGCAGTTTGTCACATGGGTGAAGAGGTATATCAAACTGTTGACACCCAAGTTGGAGGGGGAGGGCCAAGAGGTGTTCAAGAAGAACATTGAGGCAGCAACCAAGTTTCTGCTTGGGAAGCTCAGCGACCTCCAATTCTTTGTTGGGGAGAGCATGCATGATGATGGCGGTTTGGTCTTTGCGTACTACAAGGAGGGCGCGACCGACCCAACATTTATCTACTTTGGTCATGGGTTGAAGGAGGTCAAGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCTP

Protein Analysis

169

Amino Acids

18.84

Weight (kDa)

4.55

Isoelectric Point (pI)

25.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCTP PF00838 1 - 164 3e-57 Translationally controlled tumour protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05540 AT3G16640
fragaria_vesca FvH4_4g18300
malus_domestica MD13G1167500.v1.1 MD13G1167600.v1.1
prunus_persica Prupe.1G134900_v2.0.a1 Prupe.1G134900_v2.0.a1
pyrus_communis pycom13g14320
rosa_chinensis RchiOBHm_Chr4g0422701
rosa_laevigata RLG00000007606
rosa_multiflora Rmu_sc0000830.1_g000051
rosa_roxburghii Rroxscaffold_5G00364620
rosa_rugosa Rorug04G0181000
rosa_samantha Rh4AG240900 Rh4BG244100 Rh4CG254900 Rh4DG239200 Rh5CG492100
rosa_wichuraiana Rw4G020790 Rw4G020800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 129
AccII CGCG 1 cut(s) 452
AciI CCGC 1 cut(s) 420
AcuI CTGAAG 2 cut(s) 174, 212
AfaI GTAC 1 cut(s) 437
AgsI TTSAA 3 cut(s) 113, 331, 490
AleI CACNNNNGTG 1 cut(s) 269
AluBI AGCT 3 cut(s) 37, 119, 373
AluI AGCT 3 cut(s) 37, 119, 373
Alw21I GWGCWC 1 cut(s) 84
AoxI GGCC 1 cut(s) 316
ApeKI GCWGC 1 cut(s) 347
AspLEI GCGC 1 cut(s) 452
AspS9I GGNCC 1 cut(s) 316
AsuHPI GGTGA 3 cut(s) 16, 176, 283
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 359
BccI CCATC 3 cut(s) 89, 154, 410
BceAI ACGGC 1 cut(s) 176
BclI TGATCA 1 cut(s) 184
BisI GCNGC 1 cut(s) 348
BlpI GCTNAGC 1 cut(s) 374
BlsI GCNGC 1 cut(s) 349
BmgT120I GGNCC 1 cut(s) 316
BplI GAGNNNNNCTC 2 cut(s) 26, 58
Bpu1102I GCTNAGC 1 cut(s) 374
BsaXI ACNNNNNCTCC 1 cut(s) 485
Bse118I RCCGGY 1 cut(s) 26
BseGI GGATG 1 cut(s) 175
BseMII CTCAG 1 cut(s) 388
BseRI GAGGAG 1 cut(s) 11
BseXI GCAGC 1 cut(s) 359
Bsh1236I CGCG 1 cut(s) 452
Bsh1285I CGRYCG 1 cut(s) 456
BshFI GGCC 1 cut(s) 318
BsiEI CGRYCG 1 cut(s) 456
BsiHKAI GWGCWC 1 cut(s) 84
BsiSI CCGG 1 cut(s) 27
BsnI GGCC 1 cut(s) 318
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 1 cut(s) 184
Bsp1720I GCTNAGC 1 cut(s) 374
BspACI CCGC 1 cut(s) 420
BspANI GGCC 1 cut(s) 318
BspCNI CTCAG 1 cut(s) 387
BspFNI CGCG 1 cut(s) 452
BsrFI RCCGGY 1 cut(s) 26
BssAI RCCGGY 1 cut(s) 26
BssMI GATC 1 cut(s) 184
Bst4CI ACNGT 1 cut(s) 291
Bst6I CTCTTC 1 cut(s) 269
BstC8I GCNNGC 1 cut(s) 407
BstDEI CTNAG 1 cut(s) 374
BstF5I GGATG 1 cut(s) 175
BstFNI CGCG 1 cut(s) 452
BstHHI GCGC 1 cut(s) 452
BstKTI GATC 1 cut(s) 187
BstMBI GATC 1 cut(s) 184
BstMCI CGRYCG 1 cut(s) 456
BstMWI GCNNNNNNNGC 1 cut(s) 370
BstNSI RCATGY 1 cut(s) 409
BstUI CGCG 1 cut(s) 452
BstV1I GCAGC 1 cut(s) 359
BsuRI GGCC 1 cut(s) 318
BtgZI GCGATG 1 cut(s) 45
BtsCI GGATG 1 cut(s) 175
Cac8I GCNNGC 1 cut(s) 407
CfoI GCGC 1 cut(s) 452
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 316
Csp6I GTAC 1 cut(s) 436
CviAII CATG 4 cut(s) 267, 406, 410, 482
CviJI RGCY 5 cut(s) 37, 119, 191, 318, 373
CviKI_1 RGCY 5 cut(s) 37, 119, 191, 318, 373
CviQI GTAC 1 cut(s) 436
DdeI CTNAG 1 cut(s) 374
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
Eam1104I CTCTTC 1 cut(s) 269
EarI CTCTTC 1 cut(s) 269
Eco57I CTGAAG 2 cut(s) 174, 212
EcoT22I ATGCAT 1 cut(s) 411
FaeI CATG 4 cut(s) 270, 409, 413, 485
FaiI YATR 7 cut(s) 58, 244, 268, 282, 407, 411, 483
FatI CATG 4 cut(s) 266, 405, 409, 481
FbaI TGATCA 1 cut(s) 184
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 1 cut(s) 348
FokI GGATG 1 cut(s) 182
Fsp4HI GCNGC 1 cut(s) 348
GlaI GCGC 1 cut(s) 451
GluI GCNGC 1 cut(s) 348
HaeIII GGCC 1 cut(s) 318
HapII CCGG 1 cut(s) 27
HhaI GCGC 1 cut(s) 452
Hin1II CATG 4 cut(s) 270, 409, 413, 485
Hin6I GCGC 1 cut(s) 450
HinP1I GCGC 1 cut(s) 450
HincII GTYRAC 3 cut(s) 205, 214, 294
HindII GTYRAC 3 cut(s) 205, 214, 294
HinfI GANTC 1 cut(s) 47
HpaII CCGG 1 cut(s) 27
HphI GGTGA 3 cut(s) 16, 176, 283
Hpy166II GTNNAC 5 cut(s) 10, 130, 205, 214, 294
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 2 cut(s) 230, 331
Hpy8I GTNNAC 5 cut(s) 10, 130, 205, 214, 294
HpyAV CCTTC 2 cut(s) 149, 484
HpyCH4III ACNGT 1 cut(s) 291
HpyCH4V TGCA 2 cut(s) 140, 409
HpyF10VI GCNNNNNNNGC 1 cut(s) 370
HpyF3I CTNAG 1 cut(s) 374
Hsp92II CATG 4 cut(s) 270, 409, 413, 485
HspAI GCGC 1 cut(s) 450
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 1 cut(s) 184
LmnI GCTCC 2 cut(s) 116, 232
LpnPI CCDG 4 cut(s) 40, 46, 70, 215
Lsp1109I GCAGC 1 cut(s) 359
MaeIII GTNAC 1 cut(s) 262
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MboII GAAGA 2 cut(s) 286, 346
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 1 cut(s) 386
MlyI GAGTC 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 285
Mph1103I ATGCAT 1 cut(s) 411
MslI CAYNNNNRTG 2 cut(s) 269, 414
MspI CCGG 1 cut(s) 27
MvnI CGCG 1 cut(s) 452
MwoI GCNNNNNNNGC 1 cut(s) 370
NdeII GATC 1 cut(s) 184
NlaIII CATG 4 cut(s) 270, 409, 413, 485
NmuCI GTSAC 1 cut(s) 262
NsiI ATGCAT 1 cut(s) 411
NspI RCATGY 1 cut(s) 409
OliI CACNNNNGTG 1 cut(s) 269
PaeI GCATGC 1 cut(s) 409
PkrI GCNGC 1 cut(s) 349
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
PspPI GGNCC 1 cut(s) 316
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
RseI CAYNNNNRTG 2 cut(s) 269, 414
SatI GCNGC 1 cut(s) 348
Sau3AI GATC 1 cut(s) 184
Sau96I GGNCC 1 cut(s) 316
SchI GAGTC 1 cut(s) 41
SduI GDGCHC 1 cut(s) 84
SgrAI CRCCGGYG 1 cut(s) 26
SmiMI CAYNNNNRTG 2 cut(s) 269, 414
SphI GCATGC 1 cut(s) 409
Sse9I AATT 1 cut(s) 386
SsiI CCGC 1 cut(s) 420
TaaI ACNGT 1 cut(s) 291
TaqII GACCGA 1 cut(s) 470
TasI AATT 1 cut(s) 386
TseFI GTSAC 1 cut(s) 262
TseI GCWGC 1 cut(s) 347
Tsp45I GTSAC 1 cut(s) 262
XceI RCATGY 1 cut(s) 409
XcmI CCANNNNNNNNNTGG 1 cut(s) 392
XmiI GTMKAC 1 cut(s) 129
Zsp2I ATGCAT 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.