AT3G16640

Belongs to the TCTP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011211
Physical Location & Seq
Reverse (-)
5669317 .. 5670842
1526 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G16640.1

Sequence Viewer

Length: 507 bp
ATGTTGGTGTACCAAGATCTTCTCACCGGTGATGAGCTTCTGTCTGACTCTTTCCCTTACAAGGAGATTGAGAATGGAATCCTCTGGGAAGTAGAAGGAAAGTGGGTTACTGTGGGAGCTGTAGATGTTAACATTGGTGCCAATCCATCTGCTGAAGAAGGTGGTGAGGATGAAGGTGTTGATGACTCTACTCAAAAGGTTGTTGACATTGTCGACACCTTCAGACTTCAGGAGCAACCAACTTATGACAAGAAGGGATTCATCGCTTACATTAAGAAATACATTAAGCTTTTGACACCCAAGCTCAGCGAAGAAGATCAAGCTGTCTTCAAGAAGGGTATTGAGGGAGCTACCAAGTTTTTGCTCCCCAGGCTCAGTGACTTCCAATTCTTTGTTGGGGAGGGTATGCATGATGACAGCACTTTGGTCTTTGCTTACTACAAGGAGGGTTCAACTAACCCAACATTTTTGTACTTCGCTCATGGTTTGAAGGAGGTCAAGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000902 GO:0000904 GO:0001101 GO:0001558 GO:0003006 GO:0003674 GO:0005488 GO:0005509 GO:0005515 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0007275 GO:0007346 GO:0008017 GO:0008092 GO:0008150 GO:0008283 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009819 GO:0009826 GO:0009856 GO:0009860 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010033 GO:0010035 GO:0010038 GO:0010053 GO:0010054 GO:0010119 GO:0010154 GO:0010252 GO:0010638 GO:0012505 GO:0015631 GO:0016020 GO:0016043 GO:0016049 GO:0019904 GO:0021700 GO:0022414 GO:0022622 GO:0030054 GO:0030154 GO:0031090 GO:0031110 GO:0031112 GO:0031114 GO:0031117 GO:0032501 GO:0032502 GO:0032886 GO:0032989 GO:0033043 GO:0040007 GO:0040008 GO:0040014 GO:0042221 GO:0042592 GO:0042742 GO:0042995 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043243 GO:0043244 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0046686 GO:0046872 GO:0048046 GO:0048316 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048588 GO:0048589 GO:0048608 GO:0048638 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048856 GO:0048868 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051239 GO:0051493 GO:0051495 GO:0051704 GO:0051707 GO:0051726 GO:0055044 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070507 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0090333 GO:0090406 GO:0090558 GO:0090627 GO:0090696 GO:0098542 GO:0098588 GO:0098805 GO:0099402 GO:0120025 GO:1901700 GO:1901879 GO:1901881 GO:1902903 GO:1902905 GO:1905392
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCTP

Protein Analysis

168

Amino Acids

18.91

Weight (kDa)

4.52

Isoelectric Point (pI)

27.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCTP PF00838 1 - 164 1.2e-57 Translationally controlled tumour protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05540 AT3G16640
fragaria_vesca FvH4_4g18300
malus_domestica MD13G1167500.v1.1 MD13G1167600.v1.1
prunus_persica Prupe.1G134900_v2.0.a1 Prupe.1G134900_v2.0.a1
pyrus_communis pycom13g14320
rosa_chinensis RchiOBHm_Chr4g0422701
rosa_laevigata RLG00000007606
rosa_multiflora Rmu_sc0000830.1_g000051
rosa_roxburghii Rroxscaffold_5G00364620
rosa_rugosa Rorug04G0181000
rosa_samantha Rh4AG240900 Rh4BG244100 Rh4CG254900 Rh4DG239200 Rh5CG492100
rosa_wichuraiana Rw4G020790 Rw4G020800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 137
AccI GTMKAC 1 cut(s) 213
AcuI CTGAAG 3 cut(s) 174, 205, 212
AfaI GTAC 2 cut(s) 11, 473
AfiI CCNNNNNNNGG 1 cut(s) 61
AgeI ACCGGT 1 cut(s) 26
AgsI TTSAA 3 cut(s) 331, 453, 490
AjnI CCWGG 1 cut(s) 368
AluBI AGCT 6 cut(s) 37, 119, 289, 304, 323, 350
AluI AGCT 6 cut(s) 37, 119, 289, 304, 323, 350
AsiGI ACCGGT 1 cut(s) 26
Asp700I GAANNNNTTC 1 cut(s) 257
AsuHPI GGTGA 3 cut(s) 16, 41, 176
BanI GGYRCC 1 cut(s) 137
BbsI GAAGAC 1 cut(s) 319
BccI CCATC 1 cut(s) 154
BciT130I CCWGG 1 cut(s) 370
BfmI CTRYAG 1 cut(s) 120
BglII AGATCT 1 cut(s) 16
BlpI GCTNAGC 1 cut(s) 305
Bme1390I CCNGG 1 cut(s) 370
BmiI GGNNCC 1 cut(s) 139
BmrFI CCNGG 1 cut(s) 370
BpiI GAAGAC 1 cut(s) 319
Bpu1102I GCTNAGC 1 cut(s) 305
BsaJI CCNNGG 1 cut(s) 368
BsaWI WCCGGW 1 cut(s) 26
BsaXI ACNNNNNCTCC 1 cut(s) 485
Bsc4I CCNNNNNNNGG 1 cut(s) 61
Bse118I RCCGGY 1 cut(s) 26
BseBI CCWGG 1 cut(s) 370
BseDI CCNNGG 1 cut(s) 368
BseGI GGATG 1 cut(s) 175
BseLI CCNNNNNNNGG 1 cut(s) 61
BseMII CTCAG 2 cut(s) 319, 388
BshNI GGYRCC 1 cut(s) 137
BshTI ACCGGT 1 cut(s) 26
BsiSI CCGG 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 61
Bsp143I GATC 2 cut(s) 16, 316
Bsp1720I GCTNAGC 1 cut(s) 305
BspCNI CTCAG 2 cut(s) 318, 387
BspLI GGNNCC 1 cut(s) 139
BspT107I GGYRCC 1 cut(s) 137
BsrFI RCCGGY 1 cut(s) 26
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 368
BssMI GATC 2 cut(s) 16, 316
Bst2UI CCWGG 1 cut(s) 370
Bst4CI ACNGT 1 cut(s) 112
BstDEI CTNAG 2 cut(s) 305, 374
BstF5I GGATG 1 cut(s) 175
BstKTI GATC 2 cut(s) 19, 319
BstMBI GATC 2 cut(s) 16, 316
BstMWI GCNNNNNNNGC 1 cut(s) 370
BstNI CCWGG 1 cut(s) 370
BstSCI CCNGG 1 cut(s) 368
BstSFI CTRYAG 1 cut(s) 120
BstV2I GAAGAC 1 cut(s) 319
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BtgZI GCGATG 1 cut(s) 247
BtsCI GGATG 1 cut(s) 175
BtsIMutI CAGTG 1 cut(s) 382
Cfr10I RCCGGY 1 cut(s) 26
Csp6I GTAC 2 cut(s) 10, 472
CspAI ACCGGT 1 cut(s) 26
CviAII CATG 2 cut(s) 410, 482
CviJI RGCY 7 cut(s) 37, 119, 289, 304, 323, 350, 373
CviKI_1 RGCY 7 cut(s) 37, 119, 289, 304, 323, 350, 373
CviQI GTAC 2 cut(s) 10, 472
DdeI CTNAG 2 cut(s) 305, 374
DpnI GATC 2 cut(s) 18, 318
DpnII GATC 2 cut(s) 16, 316
Eco57I CTGAAG 3 cut(s) 174, 205, 212
EcoRII CCWGG 1 cut(s) 368
EcoT22I ATGCAT 1 cut(s) 411
FaeI CATG 2 cut(s) 413, 485
FaiI YATR 4 cut(s) 246, 407, 411, 483
FatI CATG 2 cut(s) 409, 481
FblI GTMKAC 1 cut(s) 213
FokI GGATG 1 cut(s) 182
HapII CCGG 1 cut(s) 27
Hin1II CATG 2 cut(s) 413, 485
HincII GTYRAC 3 cut(s) 130, 205, 214
HindII GTYRAC 3 cut(s) 130, 205, 214
HindIII AAGCTT 1 cut(s) 287
HinfI GANTC 4 cut(s) 47, 78, 185, 258
HpaI GTTAAC 1 cut(s) 130
HpaII CCGG 1 cut(s) 27
HphI GGTGA 3 cut(s) 16, 41, 176
Hpy166II GTNNAC 4 cut(s) 10, 130, 205, 214
Hpy188I TCNGA 2 cut(s) 46, 224
Hpy188III TCNNGA 2 cut(s) 230, 331
Hpy8I GTNNAC 4 cut(s) 10, 130, 205, 214
HpyAV CCTTC 7 cut(s) 89, 152, 167, 229, 247, 328, 484
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4V TGCA 1 cut(s) 409
HpyF10VI GCNNNNNNNGC 1 cut(s) 370
HpyF3I CTNAG 2 cut(s) 305, 374
Hsp92II CATG 2 cut(s) 413, 485
KspAI GTTAAC 1 cut(s) 130
Kzo9I GATC 2 cut(s) 16, 316
LmnI GCTCC 4 cut(s) 116, 232, 347, 369
LpnPI CCDG 5 cut(s) 40, 70, 215, 355, 382
MaeIII GTNAC 2 cut(s) 106, 377
MalI GATC 2 cut(s) 18, 318
MboI GATC 2 cut(s) 16, 316
MboII GAAGA 5 cut(s) 11, 167, 319, 323, 326
MflI RGATCY 1 cut(s) 16
MluCI AATT 1 cut(s) 386
MlyI GAGTC 2 cut(s) 41, 179
MnlI CCTC 6 cut(s) 92, 160, 337, 394, 439, 487
Mph1103I ATGCAT 1 cut(s) 411
MroXI GAANNNNTTC 1 cut(s) 257
MseI TTAA 3 cut(s) 129, 273, 285
MspI CCGG 1 cut(s) 27
MspR9I CCNGG 1 cut(s) 370
MvaI CCWGG 1 cut(s) 370
MwoI GCNNNNNNNGC 1 cut(s) 370
NdeII GATC 2 cut(s) 16, 316
NlaIII CATG 2 cut(s) 413, 485
NlaIV GGNNCC 1 cut(s) 139
NmuCI GTSAC 1 cut(s) 377
NsiI ATGCAT 1 cut(s) 411
PdmI GAANNNNTTC 1 cut(s) 257
PfeI GAWTC 2 cut(s) 78, 258
PflFI GACNNNGTC 1 cut(s) 209
PinAI ACCGGT 1 cut(s) 26
PleI GAGTC 2 cut(s) 41, 179
PpsI GAGTC 2 cut(s) 41, 179
Psp6I CCWGG 1 cut(s) 368
PspGI CCWGG 1 cut(s) 368
PspN4I GGNNCC 1 cut(s) 139
PsuI RGATCY 1 cut(s) 16
PsyI GACNNNGTC 1 cut(s) 209
RsaI GTAC 2 cut(s) 11, 473
RsaNI GTAC 2 cut(s) 10, 472
SalI GTCGAC 1 cut(s) 212
SaqAI TTAA 3 cut(s) 129, 273, 285
Sau3AI GATC 2 cut(s) 16, 316
SchI GAGTC 2 cut(s) 41, 179
ScrFI CCNGG 1 cut(s) 370
SfcI CTRYAG 1 cut(s) 120
SgrAI CRCCGGYG 1 cut(s) 26
Sse9I AATT 1 cut(s) 386
StyD4I CCNGG 1 cut(s) 368
TaaI ACNGT 1 cut(s) 112
TaqI TCGA 1 cut(s) 213
TasI AATT 1 cut(s) 386
TatI WGTACW 1 cut(s) 471
TfiI GAWTC 2 cut(s) 78, 258
Tru1I TTAA 3 cut(s) 129, 273, 285
Tru9I TTAA 3 cut(s) 129, 273, 285
TscAI CASTG 1 cut(s) 382
TseFI GTSAC 1 cut(s) 377
Tsp45I GTSAC 1 cut(s) 377
TspDTI ATGAA 2 cut(s) 186, 250
TspRI CASTG 1 cut(s) 382
Tth111I GACNNNGTC 1 cut(s) 209
XcmI CCANNNNNNNNNTGG 1 cut(s) 392
XmiI GTMKAC 1 cut(s) 213
XmnI GAANNNNTTC 1 cut(s) 257
Zsp2I ATGCAT 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.