Rh4BG244100

Belongs to the TCTP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0011211
Physical Location & Seq
Reverse (-)
41030914 .. 41033352
2439 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG244100.1

Sequence Viewer

Length: 519 bp
ATGCGTAATGCTGTGTCTCGAAACTGGCTTCATGTAATTGGTGATGAGCTTCTCTCGGACTCATTTCCATACAAAGAGATCCACAATGGAGTATTGTGGGAAGTTGACGGAAAGTGGGTTGTTCAAGGAGCAGTTGATGTAGACATTGGTGCAAATCCTTCTGCTGAAGGTGCAGATGCTGATGAGGGTGTTGATGATCAAACTGCTAAGGTGGTTGACATTGTTGACACTTTCAGACTTCAGGAGCAACCTCCTTTTGATAAGAAGCAGTTTGTCACATGGGTGAAGAGGTACATCAAATTGTTGACCCCAAAGCTTGAGGGAGAGCATCAGGAGACATTTAAGAAGAACATTGAGGGAGCAACCAAGTTTCTGCTTTCCAAGCTCAGTGACCTCCAATTCTTCGTGGGGGAGAGCATGGGTGATGATGCAGCTTTGGTCTTTGCCTACTACAAAGAGGGTGCCACTGACCCAACCTTTATCTACTTCGCCCATGGTTTGAAGGAGGTCAAGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCTP

Protein Analysis

172

Amino Acids

19.37

Weight (kDa)

4.82

Isoelectric Point (pI)

20.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCTP PF00838 14 - 168 4.2e-52 Translationally controlled tumour protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05540 AT3G16640
fragaria_vesca FvH4_4g18300
malus_domestica MD13G1167500.v1.1 MD13G1167600.v1.1
prunus_persica Prupe.1G134900_v2.0.a1 Prupe.1G134900_v2.0.a1
pyrus_communis pycom13g14320
rosa_chinensis RchiOBHm_Chr4g0422701
rosa_laevigata RLG00000007606
rosa_multiflora Rmu_sc0000830.1_g000051
rosa_roxburghii Rroxscaffold_5G00364620
rosa_rugosa Rorug04G0181000
rosa_samantha Rh4AG240900 Rh4BG244100 Rh4CG254900 Rh4DG239200 Rh5CG492100
rosa_wichuraiana Rw4G020790 Rw4G020800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 461
AccI GTMKAC 1 cut(s) 141
AclWI GGATC 1 cut(s) 73
AcuI CTGAAG 2 cut(s) 186, 224
AfaI GTAC 1 cut(s) 293
AgsI TTSAA 2 cut(s) 125, 502
AleI CACNNNNGTG 1 cut(s) 281
AluBI AGCT 4 cut(s) 49, 316, 385, 434
AluI AGCT 4 cut(s) 49, 316, 385, 434
Alw26I GTCTC 2 cut(s) 21, 329
AlwI GGATC 1 cut(s) 73
AlwNI CAGNNNCTG 1 cut(s) 179
ApeKI GCWGC 1 cut(s) 431
AsuHPI GGTGA 3 cut(s) 53, 295, 434
BanI GGYRCC 1 cut(s) 461
BbvI GCAGC 1 cut(s) 443
BclI TGATCA 1 cut(s) 196
BcoDI GTCTC 2 cut(s) 21, 329
BisI GCNGC 1 cut(s) 432
BlsI GCNGC 1 cut(s) 433
BmiI GGNNCC 1 cut(s) 463
BmsI GCATC 3 cut(s) 166, 337, 418
BplI GAGNNNNNCTC 2 cut(s) 38, 70
Bpu10I CCTNAGC 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 338
BsaJI CCNNGG 1 cut(s) 493
BsaXI ACNNNNNCTCC 1 cut(s) 497
Bse1I ACTGG 1 cut(s) 29
BseDI CCNNGG 1 cut(s) 493
BseMII CTCAG 1 cut(s) 400
BseNI ACTGG 1 cut(s) 29
BseXI GCAGC 1 cut(s) 443
BsgI GTGCAG 1 cut(s) 192
BshNI GGYRCC 1 cut(s) 461
BsmAI GTCTC 2 cut(s) 21, 329
Bsp143I GATC 2 cut(s) 78, 196
Bsp19I CCATGG 1 cut(s) 493
BspCNI CTCAG 1 cut(s) 399
BspLI GGNNCC 1 cut(s) 463
BspPI GGATC 1 cut(s) 73
BspT107I GGYRCC 1 cut(s) 461
BsrI ACTGG 1 cut(s) 29
BssECI CCNNGG 1 cut(s) 493
BssMI GATC 2 cut(s) 78, 196
BssT1I CCWWGG 1 cut(s) 493
Bst6I CTCTTC 1 cut(s) 281
BstDEI CTNAG 2 cut(s) 207, 386
BstDSI CCRYGG 1 cut(s) 493
BstKTI GATC 2 cut(s) 81, 199
BstMAI GTCTC 2 cut(s) 21, 329
BstMBI GATC 2 cut(s) 78, 196
BstMWI GCNNNNNNNGC 2 cut(s) 170, 382
BstV1I GCAGC 1 cut(s) 443
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
BtgI CCRYGG 1 cut(s) 493
BtsIMutI CAGTG 2 cut(s) 394, 465
CaiI CAGNNNCTG 1 cut(s) 179
Csp6I GTAC 1 cut(s) 292
CviAII CATG 4 cut(s) 32, 279, 418, 494
CviJI RGCY 5 cut(s) 28, 49, 316, 385, 434
CviKI_1 RGCY 5 cut(s) 28, 49, 316, 385, 434
CviQI GTAC 1 cut(s) 292
DdeI CTNAG 2 cut(s) 207, 386
DpnI GATC 2 cut(s) 80, 198
DpnII GATC 2 cut(s) 78, 196
Eam1104I CTCTTC 1 cut(s) 281
EarI CTCTTC 1 cut(s) 281
Eco130I CCWWGG 1 cut(s) 493
Eco57I CTGAAG 2 cut(s) 186, 224
EcoT14I CCWWGG 1 cut(s) 493
ErhI CCWWGG 1 cut(s) 493
FaeI CATG 4 cut(s) 35, 282, 421, 497
FaiI YATR 5 cut(s) 33, 70, 280, 419, 495
FatI CATG 4 cut(s) 31, 278, 417, 493
FbaI TGATCA 1 cut(s) 196
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 1 cut(s) 432
Fsp4HI GCNGC 1 cut(s) 432
GluI GCNGC 1 cut(s) 432
Hin1II CATG 4 cut(s) 35, 282, 421, 497
HincII GTYRAC 4 cut(s) 106, 217, 226, 306
HindII GTYRAC 4 cut(s) 106, 217, 226, 306
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 1 cut(s) 59
HphI GGTGA 3 cut(s) 53, 295, 434
Hpy166II GTNNAC 5 cut(s) 106, 142, 217, 226, 306
Hpy188I TCNGA 2 cut(s) 58, 236
Hpy188III TCNNGA 3 cut(s) 18, 242, 332
Hpy8I GTNNAC 5 cut(s) 106, 142, 217, 226, 306
HpyAV CCTTC 3 cut(s) 161, 168, 496
HpyCH4V TGCA 3 cut(s) 152, 173, 431
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 382
HpyF3I CTNAG 2 cut(s) 207, 386
Hsp92II CATG 4 cut(s) 35, 282, 421, 497
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 2 cut(s) 78, 196
LmnI GCTCC 3 cut(s) 128, 244, 359
LpnPI CCDG 3 cut(s) 10, 227, 317
Lsp1109I GCAGC 1 cut(s) 443
LweI GCATC 3 cut(s) 166, 337, 418
MaeIII GTNAC 2 cut(s) 274, 389
MalI GATC 2 cut(s) 80, 198
MboI GATC 2 cut(s) 78, 196
MboII GAAGA 3 cut(s) 298, 358, 394
MflI RGATCY 1 cut(s) 78
MluCI AATT 3 cut(s) 36, 299, 398
MlyI GAGTC 1 cut(s) 53
MnlI CCTC 8 cut(s) 178, 261, 282, 313, 349, 404, 451, 499
MseI TTAA 1 cut(s) 342
MslI CAYNNNNRTG 1 cut(s) 281
MwoI GCNNNNNNNGC 2 cut(s) 170, 382
NcoI CCATGG 1 cut(s) 493
NdeII GATC 2 cut(s) 78, 196
NlaIII CATG 4 cut(s) 35, 282, 421, 497
NlaIV GGNNCC 1 cut(s) 463
NmuCI GTSAC 2 cut(s) 274, 389
OliI CACNNNNGTG 1 cut(s) 281
PkrI GCNGC 1 cut(s) 433
PleI GAGTC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 53
PspN4I GGNNCC 1 cut(s) 463
PstNI CAGNNNCTG 1 cut(s) 179
PsuI RGATCY 1 cut(s) 78
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
RseI CAYNNNNRTG 1 cut(s) 281
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 1 cut(s) 432
Sau3AI GATC 2 cut(s) 78, 196
SchI GAGTC 1 cut(s) 53
SfaNI GCATC 3 cut(s) 166, 337, 418
SmiMI CAYNNNNRTG 1 cut(s) 281
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
Sse9I AATT 3 cut(s) 36, 299, 398
StyI CCWWGG 1 cut(s) 493
TaqI TCGA 1 cut(s) 19
TasI AATT 3 cut(s) 36, 299, 398
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 2 cut(s) 394, 472
TseFI GTSAC 2 cut(s) 274, 389
TseI GCWGC 1 cut(s) 431
Tsp45I GTSAC 2 cut(s) 274, 389
TspDTI ATGAA 1 cut(s) 20
TspGWI ACGGA 1 cut(s) 123
TspRI CASTG 2 cut(s) 394, 472
XmiI GTMKAC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.