Rh4CG254900

Belongs to the TCTP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0011211
Physical Location & Seq
Reverse (-)
50538203 .. 50540187
1985 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG254900.1

Sequence Viewer

Length: 393 bp
ATGTTGGTTTACCAGGACCTCCTCACCGGTGATGAGCTTCTCTCGGACTCGTTTCCATACAGAGAGATCCACAATGGAGTATTGTGGGAAGTTGACGGAAAGTGGGTTGTTCAAGGAGCAGTTGATGTAGACATTGGTGCAAATCCTTCTGCTGAAGGTGCAGATGCTGATGAGGGTGTTGATGATCAAACTGTTAAGGTGGTTGACATTGTTGACACTTTCAGACTTCAGGAGCAACCTCCTTTTGATAAGAAGCAGTTTGTCACATGGGTGAAGAGGTACATCAAATTGCTGACCCCAAAGCTTGAGGGAGAGCATCAGGAGACATTTAAGAAGAACATTGAGGGAGCAACCAAGTTTCTGCTTTCCAAGCTCAGTGACCTCCAATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TCTP

Protein Analysis

130

Amino Acids

14.72

Weight (kDa)

4.53

Isoelectric Point (pI)

21.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCTP PF00838 1 - 129 1.2e-41 Translationally controlled tumour protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011211)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05540 AT3G16640
fragaria_vesca FvH4_4g18300
malus_domestica MD13G1167500.v1.1 MD13G1167600.v1.1
prunus_persica Prupe.1G134900_v2.0.a1 Prupe.1G134900_v2.0.a1
pyrus_communis pycom13g14320
rosa_chinensis RchiOBHm_Chr4g0422701
rosa_laevigata RLG00000007606
rosa_multiflora Rmu_sc0000830.1_g000051
rosa_roxburghii Rroxscaffold_5G00364620
rosa_rugosa Rorug04G0181000
rosa_samantha Rh4AG240900 Rh4BG244100 Rh4CG254900 Rh4DG239200 Rh5CG492100
rosa_wichuraiana Rw4G020790 Rw4G020800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 129
AclWI GGATC 1 cut(s) 61
AcuI CTGAAG 2 cut(s) 174, 212
AfaI GTAC 1 cut(s) 281
AgeI ACCGGT 1 cut(s) 26
AgsI TTSAA 1 cut(s) 113
AjnI CCWGG 1 cut(s) 12
AleI CACNNNNGTG 1 cut(s) 269
AluBI AGCT 3 cut(s) 37, 304, 373
AluI AGCT 3 cut(s) 37, 304, 373
Alw26I GTCTC 1 cut(s) 317
AlwI GGATC 1 cut(s) 61
AlwNI CAGNNNCTG 1 cut(s) 167
AsiGI ACCGGT 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 16
AsuHPI GGTGA 3 cut(s) 16, 41, 283
AvaII GGWCC 1 cut(s) 16
BciT130I CCWGG 1 cut(s) 14
BclI TGATCA 1 cut(s) 184
BcoDI GTCTC 1 cut(s) 317
Bme1390I CCNGG 1 cut(s) 14
Bme18I GGWCC 1 cut(s) 16
BmgT120I GGNCC 1 cut(s) 16
BmrFI CCNGG 1 cut(s) 14
BmsI GCATC 2 cut(s) 154, 325
BplI GAGNNNNNCTC 2 cut(s) 26, 58
BpuEI CTTGAG 1 cut(s) 326
BsaWI WCCGGW 1 cut(s) 26
Bse118I RCCGGY 1 cut(s) 26
BseBI CCWGG 1 cut(s) 14
BseMII CTCAG 1 cut(s) 388
BseRI GAGGAG 1 cut(s) 11
BsgI GTGCAG 1 cut(s) 180
BshTI ACCGGT 1 cut(s) 26
BsiSI CCGG 1 cut(s) 27
BsmAI GTCTC 1 cut(s) 317
Bsp143I GATC 2 cut(s) 66, 184
BspCNI CTCAG 1 cut(s) 387
BspPI GGATC 1 cut(s) 61
BsrFI RCCGGY 1 cut(s) 26
BssAI RCCGGY 1 cut(s) 26
BssMI GATC 2 cut(s) 66, 184
Bst2UI CCWGG 1 cut(s) 14
Bst4CI ACNGT 1 cut(s) 193
Bst6I CTCTTC 1 cut(s) 269
BstDEI CTNAG 1 cut(s) 374
BstKTI GATC 2 cut(s) 69, 187
BstMAI GTCTC 1 cut(s) 317
BstMBI GATC 2 cut(s) 66, 184
BstMWI GCNNNNNNNGC 2 cut(s) 158, 370
BstNI CCWGG 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 12
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 382
CaiI CAGNNNCTG 1 cut(s) 167
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 16
Csp6I GTAC 1 cut(s) 280
CspAI ACCGGT 1 cut(s) 26
CviAII CATG 1 cut(s) 267
CviJI RGCY 3 cut(s) 37, 304, 373
CviKI_1 RGCY 3 cut(s) 37, 304, 373
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 1 cut(s) 374
DpnI GATC 2 cut(s) 68, 186
DpnII GATC 2 cut(s) 66, 184
Eam1104I CTCTTC 1 cut(s) 269
EarI CTCTTC 1 cut(s) 269
Eco47I GGWCC 1 cut(s) 16
Eco57I CTGAAG 2 cut(s) 174, 212
EcoO109I RGGNCCY 1 cut(s) 16
EcoRII CCWGG 1 cut(s) 12
FaeI CATG 1 cut(s) 270
FaiI YATR 2 cut(s) 58, 268
FatI CATG 1 cut(s) 266
FbaI TGATCA 1 cut(s) 184
FblI GTMKAC 1 cut(s) 129
HapII CCGG 1 cut(s) 27
Hin1II CATG 1 cut(s) 270
HincII GTYRAC 3 cut(s) 94, 205, 214
HindII GTYRAC 3 cut(s) 94, 205, 214
HindIII AAGCTT 1 cut(s) 302
HinfI GANTC 1 cut(s) 47
HpaII CCGG 1 cut(s) 27
HphI GGTGA 3 cut(s) 16, 41, 283
Hpy166II GTNNAC 5 cut(s) 10, 94, 130, 205, 214
Hpy188I TCNGA 2 cut(s) 46, 224
Hpy188III TCNNGA 2 cut(s) 230, 320
Hpy8I GTNNAC 5 cut(s) 10, 94, 130, 205, 214
HpyAV CCTTC 2 cut(s) 149, 156
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4V TGCA 2 cut(s) 140, 161
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 370
HpyF3I CTNAG 1 cut(s) 374
Hsp92II CATG 1 cut(s) 270
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 2 cut(s) 66, 184
LmnI GCTCC 3 cut(s) 116, 232, 347
LpnPI CCDG 4 cut(s) 26, 40, 215, 305
LweI GCATC 2 cut(s) 154, 325
MaeIII GTNAC 2 cut(s) 262, 377
MalI GATC 2 cut(s) 68, 186
MboI GATC 2 cut(s) 66, 184
MboII GAAGA 2 cut(s) 286, 346
MfeI CAATTG 1 cut(s) 386
MflI RGATCY 1 cut(s) 66
MluCI AATT 2 cut(s) 287, 386
MlyI GAGTC 1 cut(s) 41
MnlI CCTC 8 cut(s) 29, 32, 166, 249, 270, 301, 337, 392
MseI TTAA 2 cut(s) 195, 330
MslI CAYNNNNRTG 1 cut(s) 269
MspI CCGG 1 cut(s) 27
MspR9I CCNGG 1 cut(s) 14
MunI CAATTG 1 cut(s) 386
MvaI CCWGG 1 cut(s) 14
MwoI GCNNNNNNNGC 2 cut(s) 158, 370
NdeII GATC 2 cut(s) 66, 184
NlaIII CATG 1 cut(s) 270
NmuCI GTSAC 2 cut(s) 262, 377
OliI CACNNNNGTG 1 cut(s) 269
PinAI ACCGGT 1 cut(s) 26
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
PpuMI RGGWCCY 1 cut(s) 16
Psp5II RGGWCCY 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 12
PspGI CCWGG 1 cut(s) 12
PspPI GGNCC 1 cut(s) 16
PspPPI RGGWCCY 1 cut(s) 16
PstNI CAGNNNCTG 1 cut(s) 167
PsuI RGATCY 1 cut(s) 66
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
RseI CAYNNNNRTG 1 cut(s) 269
SaqAI TTAA 2 cut(s) 195, 330
Sau3AI GATC 2 cut(s) 66, 184
Sau96I GGNCC 1 cut(s) 16
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 1 cut(s) 14
SetI ASST 9 cut(s) 21, 39, 160, 201, 241, 281, 306, 375, 384
SfaNI GCATC 2 cut(s) 154, 325
SgrAI CRCCGGYG 1 cut(s) 26
SinI GGWCC 1 cut(s) 16
SmiMI CAYNNNNRTG 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 2 cut(s) 287, 386
StyD4I CCNGG 1 cut(s) 12
TaaI ACNGT 1 cut(s) 193
TasI AATT 2 cut(s) 287, 386
Tru1I TTAA 2 cut(s) 195, 330
Tru9I TTAA 2 cut(s) 195, 330
TscAI CASTG 1 cut(s) 382
TseFI GTSAC 2 cut(s) 262, 377
Tsp45I GTSAC 2 cut(s) 262, 377
TspGWI ACGGA 1 cut(s) 111
TspRI CASTG 1 cut(s) 382
VpaK11BI GGWCC 1 cut(s) 16
XmiI GTMKAC 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.