Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010026

Physical Location & Seq

Genomic Coordinates Forward (+)

1684946 .. 1687664

Gene Structure 2719 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G05710.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGCGACTAGGAATCGTACGCTGTTGTTTAGGAAGTACAGAAACTCTCTCAGGAGCGTTCGTGCTCCAATGGGGTCGTCTTCGTCGTCGACATTGACGGAGCACAATTCGTTGACCGGAGCTAAATCCGGATTAGGCCCGGTGATCGAGATGGCGAGCACGTCTCTATTGAATCCAAATCGGTCTTATGCTCCAGTCAGTACCGAGGATCCTGGGAATTCGAGAGGTACAATAACAGTGGGCTTACCACCAGATTGGGTTGATGTATCTGAGGAGATTTCAGTTTACATTCAACGTGCAAGAACCAAAATGGCTGAATTGGGAAAGGCTCATGCGAAAGCGTTGATGCCTTCGTTTGGGGATGGTAAAGAAGATCAACATCAAATCGAGACTTTGACACAAGAGGTTACCTTCCTATTGAAGAAATCTGAGAAGCAACTTCAGAGGCTTTCTGCAGCTGGACCTTCTGAAGATTCAAATGTCAGGAAAAACGTCCAGCGATCTCTTGCTACGGATCTCCAAAACCTTTCTATGGAGTTACGCAAGAAACAGTCTACATATTTGAAACGTTTGAGACTACAAAAAGAGGATGGAGCGGATTTAGAGATGAATCTGAACGGAAGCAGATATAAAGCAGAAGATGATGACTTTGATGATATGGTATTTAGTGAGCATCAAATGAGCAAGATAAAAAAGAGTGAGGAAATATCAATAGAGAGGGAGAAAGAGATTCAACAGGTTGTTGAATCCGTAAGCGAGCTTGCTCAGATCATGAAGGATCTGTCAGCGCTTGTGATAGACCAGGGTACAATAGTTGATCGGATTGACTATAATATCCAGAACGTTGCTAGTACAGTCGACGATGGTCTCAAACAGCTGCAAAAGGCGGAACGTACACAGAGACAAGGAGGTATGGTGATGTGTGCGTCTGTTCTTGTCATTCTCTGCTTCATCATGCTGGTACTCTTAATCCTCAAGGAGATTCTGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0002790 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006906 GO:0006996 GO:0007030 GO:0007034 GO:0008104 GO:0008150 GO:0009306 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032588 GO:0032940 GO:0032991 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

330

Amino Acids

36.89

Weight (kDa)

6.49

Isoelectric Point (pI)

51.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNARE	PF05739	271 - 323	4.3e-16	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05710 AT3G05710 AT5G26980 AT5G26980 AT5G26980
fragaria_vesca	FvH4_6g07100 FvH4_6g07100 FvH4_6g07100
malus_domestica	MD04G1196100.v1.1 MD12G1209100.v1.1
prunus_persica	Prupe.6G316200_v2.0.a1
pyrus_communis	pycom12g19630
rosa_chinensis	RchiOBHm_Chr3g0456681
rosa_laevigata	RLG00000025284
rosa_roxburghii	Rroxscaffold_11G00450400 Rroxscaffold_6G00422540
rosa_rugosa	Rorug03G0015000
rosa_samantha	Rh3AG075500 Rh3BG077400 Rh3DG079100
rosa_wichuraiana	Rw3G006470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	596
AccI	GTMKAC	3 cut(s)	89, 554, 858
AccIII	TCCGGA	1 cut(s)	128
AciI	CCGC	2 cut(s)	596, 887
AclI	AACGTT	2 cut(s)	568, 843
AclWI	GGATC	4 cut(s)	203, 216, 522, 786
AcsI	RAATTY	1 cut(s)	217
AcuI	CTGAAG	2 cut(s)	425, 489
AfaI	GTAC	8 cut(s)	19, 38, 202, 229, 808, 853, 895, 963
AfeI	AGCGCT	1 cut(s)	789
AfiI	CCNNNNNNNGG	2 cut(s)	356, 532
AgsI	TTSAA	7 cut(s)	172, 293, 421, 477, 565, 734, 746
AjiI	CACGTC	1 cut(s)	162
AjnI	CCWGG	2 cut(s)	211, 801
AluBI	AGCT	4 cut(s)	122, 458, 760, 877
AluI	AGCT	4 cut(s)	122, 458, 760, 877
Alw21I	GWGCWC	3 cut(s)	67, 105, 161
Alw26I	GTCTC	5 cut(s)	168, 383, 568, 872, 895
AlwI	GGATC	4 cut(s)	203, 216, 522, 786
Aor13HI	TCCGGA	1 cut(s)	128
Aor51HI	AGCGCT	1 cut(s)	789
AoxI	GGCC	1 cut(s)	136
ApeKI	GCWGC	2 cut(s)	455, 877
ApoI	RAATTY	1 cut(s)	217
AspLEI	GCGC	1 cut(s)	790
AspS9I	GGNCC	2 cut(s)	137, 461
AsuC2I	CCSGG	1 cut(s)	140
AsuHPI	GGTGA	2 cut(s)	154, 928
AvaII	GGWCC	1 cut(s)	461
BaeI	ACNNNNGTAYC	2 cut(s)	798, 831
BamHI	GGATCC	1 cut(s)	208
BbsI	GAAGAC	1 cut(s)	72
Bbv12I	GWGCWC	3 cut(s)	67, 105, 161
BbvI	GCAGC	2 cut(s)	467, 864
BccI	CCATC	4 cut(s)	145, 356, 584, 857
BciT130I	CCWGG	2 cut(s)	213, 803
BcnI	CCSGG	1 cut(s)	140
BcoDI	GTCTC	5 cut(s)	168, 383, 568, 872, 895
BfaI	CTAG	2 cut(s)	9, 849
BfmI	CTRYAG	1 cut(s)	453
BfoI	RGCGCY	1 cut(s)	791
BisI	GCNGC	2 cut(s)	456, 878
BlsI	GCNGC	2 cut(s)	457, 879
Bme1390I	CCNGG	3 cut(s)	140, 213, 803
Bme18I	GGWCC	1 cut(s)	461
BmgBI	CACGTC	1 cut(s)	162
BmgT120I	GGNCC	2 cut(s)	137, 461
BmiI	GGNNCC	1 cut(s)	210
BmrFI	CCNGG	3 cut(s)	140, 213, 803
BmsI	GCATC	2 cut(s)	336, 682
BoxI	GACNNNNGTC	1 cut(s)	864
BpiI	GAAGAC	1 cut(s)	72
BplI	GAGNNNNNCTC	2 cut(s)	148, 180
BpmI	CTGGAG	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	959
BpuMI	CCSGG	1 cut(s)	140
BsaBI	GATNNNNATC	1 cut(s)	378
BsaI	GGTCTC	1 cut(s)	872
BsaJI	CCNNGG	3 cut(s)	204, 212, 802
BsaWI	WCCGGW	2 cut(s)	116, 128
BsaXI	ACNNNNNCTCC	5 cut(s)	46, 76, 900, 930, 971
Bsc4I	CCNNNNNNNGG	2 cut(s)	356, 532
Bse1I	ACTGG	1 cut(s)	194
Bse8I	GATNNNNATC	1 cut(s)	378
BseAI	TCCGGA	1 cut(s)	128
BseBI	CCWGG	2 cut(s)	213, 803
BseDI	CCNNGG	3 cut(s)	204, 212, 802
BseGI	GGATG	2 cut(s)	367, 595
BseJI	GATNNNNATC	1 cut(s)	378
BseLI	CCNNNNNNNGG	2 cut(s)	356, 532
BseMII	CTCAG	4 cut(s)	64, 261, 420, 779
BseNI	ACTGG	1 cut(s)	194
BseRI	GAGGAG	1 cut(s)	287
BseXI	GCAGC	2 cut(s)	467, 864
BshFI	GGCC	1 cut(s)	138
BsiHKAI	GWGCWC	3 cut(s)	67, 105, 161
BsiSI	CCGG	3 cut(s)	117, 129, 140
BsiWI	CGTACG	1 cut(s)	17
BslI	CCNNNNNNNGG	2 cut(s)	356, 532
BsmAI	GTCTC	5 cut(s)	168, 383, 568, 872, 895
BsmBI	CGTCTC	1 cut(s)	168
BsnI	GGCC	1 cut(s)	138
Bso31I	GGTCTC	1 cut(s)	872
Bsp1286I	GDGCHC	3 cut(s)	67, 105, 161
Bsp13I	TCCGGA	1 cut(s)	128
Bsp143I	GATC	8 cut(s)	144, 208, 373, 500, 514, 768, 778, 817
BspACI	CCGC	2 cut(s)	596, 887
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	4 cut(s)	63, 262, 421, 778
BspEI	TCCGGA	1 cut(s)	128
BspHI	TCATGA	1 cut(s)	771
BspLI	GGNNCC	1 cut(s)	210
BspMAI	CTGCAG	1 cut(s)	457
BspPI	GGATC	4 cut(s)	203, 216, 522, 786
BspTNI	GGTCTC	1 cut(s)	872
BsrBI	CCGCTC	1 cut(s)	596
BsrI	ACTGG	1 cut(s)	194
BssECI	CCNNGG	3 cut(s)	204, 212, 802
BssMI	GATC	8 cut(s)	144, 208, 373, 500, 514, 768, 778, 817
Bst2UI	CCWGG	2 cut(s)	213, 803
Bst4CI	ACNGT	3 cut(s)	238, 552, 856
BstC8I	GCNNGC	3 cut(s)	157, 758, 762
BstDEI	CTNAG	4 cut(s)	50, 270, 429, 765
BstEII	GGTNACC	1 cut(s)	406
BstF5I	GGATG	2 cut(s)	367, 595
BstH2I	RGCGCY	1 cut(s)	791
BstHHI	GCGC	1 cut(s)	790
BstKTI	GATC	8 cut(s)	147, 211, 376, 503, 517, 771, 781, 820
BstMAI	GTCTC	5 cut(s)	168, 383, 568, 872, 895
BstMBI	GATC	8 cut(s)	144, 208, 373, 500, 514, 768, 778, 817
BstNI	CCWGG	2 cut(s)	213, 803
BstPAI	GACNNNNGTC	1 cut(s)	864
BstPI	GGTNACC	1 cut(s)	406
BstSCI	CCNGG	3 cut(s)	138, 211, 801
BstSFI	CTRYAG	1 cut(s)	453
BstV1I	GCAGC	2 cut(s)	467, 864
BstV2I	GAAGAC	1 cut(s)	72
BstX2I	RGATCY	3 cut(s)	208, 514, 778
BstXI	CCANNNNNNTGG	1 cut(s)	255
BstYI	RGATCY	3 cut(s)	208, 514, 778
BsuRI	GGCC	1 cut(s)	138
BtrI	CACGTC	1 cut(s)	162
BtsCI	GGATG	2 cut(s)	367, 595
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	3 cut(s)	157, 758, 762
CciI	TCATGA	1 cut(s)	771
CfoI	GCGC	1 cut(s)	790
Cfr13I	GGNCC	2 cut(s)	137, 461
CseI	GACGC	1 cut(s)	915
Csp6I	GTAC	8 cut(s)	18, 37, 201, 228, 807, 852, 894, 962
CspCI	CAANNNNNGTGG	2 cut(s)	219, 254
CviAII	CATG	3 cut(s)	332, 772, 955
CviJI	RGCY	9 cut(s)	122, 138, 243, 314, 329, 448, 458, 760, 877
CviKI_1	RGCY	9 cut(s)	122, 138, 243, 314, 329, 448, 458, 760, 877
CviQI	GTAC	8 cut(s)	18, 37, 201, 228, 807, 852, 894, 962
DdeI	CTNAG	4 cut(s)	50, 270, 429, 765
DpnI	GATC	8 cut(s)	146, 210, 375, 502, 516, 770, 780, 819
DpnII	GATC	8 cut(s)	144, 208, 373, 500, 514, 768, 778, 817
EciI	GGCGGA	1 cut(s)	902
Eco31I	GGTCTC	1 cut(s)	872
Eco47I	GGWCC	1 cut(s)	461
Eco47III	AGCGCT	1 cut(s)	789
Eco57I	CTGAAG	2 cut(s)	425, 489
Eco91I	GGTNACC	1 cut(s)	406
EcoO65I	GGTNACC	1 cut(s)	406
EcoRI	GAATTC	1 cut(s)	217
EcoRII	CCWGG	2 cut(s)	211, 801
Esp3I	CGTCTC	1 cut(s)	168
FaeI	CATG	3 cut(s)	335, 775, 958
FatI	CATG	3 cut(s)	331, 771, 954
FblI	GTMKAC	3 cut(s)	89, 554, 858
Fnu4HI	GCNGC	2 cut(s)	456, 878
FokI	GGATG	2 cut(s)	374, 602
Fsp4HI	GCNGC	2 cut(s)	456, 878
FspBI	CTAG	2 cut(s)	9, 849
GlaI	GCGC	1 cut(s)	789
GluI	GCNGC	2 cut(s)	456, 878
GsuI	CTGGAG	1 cut(s)	177
HaeII	RGCGCY	1 cut(s)	791
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	3 cut(s)	117, 129, 140
HgaI	GACGC	1 cut(s)	915
HhaI	GCGC	1 cut(s)	790
Hin1II	CATG	3 cut(s)	335, 775, 958
Hin6I	GCGC	1 cut(s)	788
HinP1I	GCGC	1 cut(s)	788
HincII	GTYRAC	3 cut(s)	90, 114, 859
HindII	GTYRAC	3 cut(s)	90, 114, 859
HinfI	GANTC	7 cut(s)	13, 172, 473, 610, 730, 746, 982
HpaII	CCGG	3 cut(s)	117, 129, 140
HphI	GGTGA	2 cut(s)	154, 928
Hpy166II	GTNNAC	6 cut(s)	90, 114, 286, 555, 859, 896
Hpy188I	TCNGA	7 cut(s)	271, 430, 444, 469, 615, 768, 822
Hpy188III	TCNNGA	8 cut(s)	52, 129, 148, 222, 388, 484, 772, 838
Hpy8I	GTNNAC	6 cut(s)	90, 114, 286, 555, 859, 896
Hpy99I	CGWCG	3 cut(s)	88, 91, 863
HpyAV	CCTTC	4 cut(s)	360, 421, 474, 769
HpyCH4III	ACNGT	3 cut(s)	238, 552, 856
HpyCH4IV	ACGT	6 cut(s)	161, 295, 492, 568, 843, 892
HpyCH4V	TGCA	3 cut(s)	299, 455, 880
HpyF3I	CTNAG	4 cut(s)	50, 270, 429, 765
HpySE526I	ACGT	6 cut(s)	161, 295, 492, 568, 843, 892
Hsp92II	CATG	3 cut(s)	335, 775, 958
HspAI	GCGC	1 cut(s)	788
Kpn2I	TCCGGA	1 cut(s)	128
Kzo9I	GATC	8 cut(s)	144, 208, 373, 500, 514, 768, 778, 817
LmnI	GCTCC	6 cut(s)	54, 70, 100, 119, 196, 593
Lsp1109I	GCAGC	2 cut(s)	467, 864
LweI	GCATC	2 cut(s)	336, 682
MaeI	CTAG	2 cut(s)	9, 849
MaeII	ACGT	6 cut(s)	161, 295, 492, 568, 843, 892
MaeIII	GTNAC	2 cut(s)	406, 537
MalI	GATC	8 cut(s)	146, 210, 375, 502, 516, 770, 780, 819
MbiI	CCGCTC	1 cut(s)	596
MboI	GATC	8 cut(s)	144, 208, 373, 500, 514, 768, 778, 817
MboII	GAAGA	5 cut(s)	72, 383, 433, 482, 650
MflI	RGATCY	3 cut(s)	208, 514, 778
MhlI	GDGCHC	3 cut(s)	67, 105, 161
MluCI	AATT	3 cut(s)	106, 217, 317
MroI	TCCGGA	1 cut(s)	128
MseI	TTAA	1 cut(s)	968
MspA1I	CMGCKG	2 cut(s)	458, 877
MspI	CCGG	3 cut(s)	117, 129, 140
MspR9I	CCNGG	3 cut(s)	140, 213, 803
MvaI	CCWGG	2 cut(s)	213, 803
NciI	CCSGG	1 cut(s)	140
NdeII	GATC	8 cut(s)	144, 208, 373, 500, 514, 768, 778, 817
NlaIII	CATG	3 cut(s)	335, 775, 958
NlaIV	GGNNCC	1 cut(s)	210
PagI	TCATGA	1 cut(s)	771
PcsI	WCGNNNNNNNCGW	1 cut(s)	83
PfeI	GAWTC	7 cut(s)	13, 172, 473, 610, 730, 746, 982
Pfl23II	CGTACG	1 cut(s)	17
PkrI	GCNGC	2 cut(s)	457, 879
PshAI	GACNNNNGTC	1 cut(s)	864
Psp1406I	AACGTT	2 cut(s)	568, 843
Psp6I	CCWGG	2 cut(s)	211, 801
PspEI	GGTNACC	1 cut(s)	406
PspGI	CCWGG	2 cut(s)	211, 801
PspLI	CGTACG	1 cut(s)	17
PspN4I	GGNNCC	1 cut(s)	210
PspPI	GGNCC	2 cut(s)	137, 461
PstI	CTGCAG	1 cut(s)	457
PsuI	RGATCY	3 cut(s)	208, 514, 778
PvuII	CAGCTG	2 cut(s)	458, 877
RsaI	GTAC	8 cut(s)	19, 38, 202, 229, 808, 853, 895, 963
RsaNI	GTAC	8 cut(s)	18, 37, 201, 228, 807, 852, 894, 962
SalI	GTCGAC	2 cut(s)	88, 857
SaqAI	TTAA	1 cut(s)	968
SatI	GCNGC	2 cut(s)	456, 878
Sau3AI	GATC	8 cut(s)	144, 208, 373, 500, 514, 768, 778, 817
Sau96I	GGNCC	2 cut(s)	137, 461
ScrFI	CCNGG	3 cut(s)	140, 213, 803
SduI	GDGCHC	3 cut(s)	67, 105, 161
SfaNI	GCATC	2 cut(s)	336, 682
SfcI	CTRYAG	1 cut(s)	453
SinI	GGWCC	1 cut(s)	461
SmlI	CTYRAG	1 cut(s)	974
SmoI	CTYRAG	1 cut(s)	974
Sse9I	AATT	3 cut(s)	106, 217, 317
SsiI	CCGC	2 cut(s)	596, 887
SspMI	CTAG	2 cut(s)	9, 849
StyD4I	CCNGG	3 cut(s)	138, 211, 801
TaaI	ACNGT	3 cut(s)	238, 552, 856
TaiI	ACGT	6 cut(s)	164, 298, 495, 571, 846, 895
TaqI	TCGA	5 cut(s)	89, 147, 221, 387, 858
TaqII	GACCGA	1 cut(s)	171
TasI	AATT	3 cut(s)	106, 217, 317
TatI	WGTACW	2 cut(s)	36, 851
TfiI	GAWTC	7 cut(s)	13, 172, 473, 610, 730, 746, 982
Tru1I	TTAA	1 cut(s)	968
Tru9I	TTAA	1 cut(s)	968
TscAI	CASTG	1 cut(s)	243
TseI	GCWGC	2 cut(s)	455, 877
TspDTI	ATGAA	3 cut(s)	623, 788, 940
TspGWI	ACGGA	4 cut(s)	113, 527, 633, 739
TspRI	CASTG	1 cut(s)	243
VpaK11BI	GGWCC	1 cut(s)	461
XapI	RAATTY	1 cut(s)	217
XmiI	GTMKAC	3 cut(s)	89, 554, 858
XspI	CTAG	2 cut(s)	9, 849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.