Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0010026

Physical Location & Seq

Genomic Coordinates Reverse (-)

1186551 .. 1187342

Gene Structure 792 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0015000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGTCAAATACTAGACAGGTGTCCCTTGACCGTTTGACATGTGTTGATCTAAGGTCGTCTGCTAGGGCAACAGCTGGCCAAGCTCTTGCTCTACACGTGTCCACTTCCCACTTCTCTCCCAACTATGTAAGTATTACTTTGCCTCATCCCATCCCTGCATGTCGTCCCAGATTTCCCAAAACCTACTTACTTAGGCCGTGTTTGGGTGAGACCATGGATAATGACCAAGAGAGAAAGGTGACGAAGAAAGCCAACATGGGAAGGTCGAGAAAGGGCTGCATGAAAGGGAAGGGAGGCCCTAAGAACGCTACGTGCACTTTCAGAGGAGTCAGGCAAAGAACTTGGGGCAAATGGGTGGCGGAAATACGCGAGCCCAAACGCGGTGCTAGGCTTTGGCTAGGCACTTTCAACACTTCCACGGAGGCAGCGCTGGCTTATGACGATGCGGCTCGAAAGCTGTACGGCTCCTCCGCCAAGCTCAACTTGCCGGACCACTCCTCCTCCTCCTCATCCTCCTCCTCCACATCACCGTCTTCGAAAACGAGTTCTGCTGATAAAGGTTGTGGTGAACACAAGCATGAAGCTTATTCAGGTGATATGCATGGAGGTTGGAGTAGTAATAATGGAGAGAATGATTGCTTGTGGGAGAGTAATCCTGTGTTGAGTGCTGATTGGTCTGGAGTTTGTGGGGAGAGGGAATTCTTAGAGCTGAATGATATAGGAATTATGATGGGTGGAAATGGCTTTGTAAGTTGGGAGGCTTCTTTGGAAGAAGCTCCATGGAGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0002790 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006906 GO:0006996 GO:0007030 GO:0007034 GO:0008104 GO:0008150 GO:0009306 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032588 GO:0032940 GO:0032991 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

263

Amino Acids

28.7

Weight (kDa)

8.9

Isoelectric Point (pI)

44.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	107 - 155	1e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05710 AT3G05710 AT5G26980 AT5G26980 AT5G26980
fragaria_vesca	FvH4_6g07100 FvH4_6g07100 FvH4_6g07100
malus_domestica	MD04G1196100.v1.1 MD12G1209100.v1.1
prunus_persica	Prupe.6G316200_v2.0.a1
pyrus_communis	pycom12g19630
rosa_chinensis	RchiOBHm_Chr3g0456681
rosa_laevigata	RLG00000025284
rosa_roxburghii	Rroxscaffold_11G00450400 Rroxscaffold_6G00422540
rosa_rugosa	Rorug03G0015000
rosa_samantha	Rh3AG075500 Rh3BG077400 Rh3DG079100
rosa_wichuraiana	Rw3G006470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	369, 381
AciI	CCGC	4 cut(s)	359, 381, 446, 471
AcoI	YGGCCR	1 cut(s)	76
AcsI	RAATTY	1 cut(s)	698
AcvI	CACGTG	1 cut(s)	97
AfaI	GTAC	1 cut(s)	461
AfeI	AGCGCT	1 cut(s)	429
AfiI	CCNNNNNNNGG	2 cut(s)	203, 380
AflIII	ACRYGT	3 cut(s)	38, 94, 96
AgsI	TTSAA	1 cut(s)	409
AluBI	AGCT	7 cut(s)	74, 83, 457, 478, 584, 709, 776
AluI	AGCT	7 cut(s)	74, 83, 457, 478, 584, 709, 776
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	1 cut(s)	203
Alw44I	GTGCAC	1 cut(s)	313
Aor51HI	AGCGCT	1 cut(s)	429
AoxI	GGCC	3 cut(s)	76, 194, 295
ApaLI	GTGCAC	1 cut(s)	313
ApeKI	GCWGC	2 cut(s)	276, 425
ApoI	RAATTY	1 cut(s)	698
AspLEI	GCGC	1 cut(s)	430
AspS9I	GGNCC	2 cut(s)	296, 490
AsuHPI	GGTGA	5 cut(s)	218, 250, 519, 578, 605
AsuII	TTCGAA	1 cut(s)	536
AvaII	GGWCC	1 cut(s)	490
BaeGI	GKGCMC	1 cut(s)	317
BalI	TGGCCA	1 cut(s)	78
BanII	GRGCYC	1 cut(s)	375
BbrPI	CACGTG	1 cut(s)	97
BbsI	GAAGAC	1 cut(s)	525
Bbv12I	GWGCWC	1 cut(s)	317
BbvI	GCAGC	2 cut(s)	263, 437
BccI	CCATC	2 cut(s)	158, 724
BceAI	ACGGC	2 cut(s)	181, 478
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	4 cut(s)	12, 63, 387, 398
BfoI	RGCGCY	1 cut(s)	431
BisI	GCNGC	3 cut(s)	277, 426, 447
BlsI	GCNGC	3 cut(s)	278, 427, 448
Bme18I	GGWCC	1 cut(s)	490
BmgT120I	GGNCC	2 cut(s)	296, 490
BmiI	GGNNCC	1 cut(s)	466
BmsI	GCATC	1 cut(s)	433
BoxI	GACNNNNGTC	1 cut(s)	19
BpiI	GAAGAC	1 cut(s)	525
BpmI	CTGGAG	1 cut(s)	699
Bpu14I	TTCGAA	1 cut(s)	536
BsaAI	YACGTR	2 cut(s)	97, 312
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	3 cut(s)	213, 417, 779
BsaXI	ACNNNNNCTCC	6 cut(s)	452, 482, 482, 485, 512, 515
Bsc4I	CCNNNNNNNGG	2 cut(s)	203, 380
BseDI	CCNNGG	3 cut(s)	213, 417, 779
BseGI	GGATG	3 cut(s)	145, 150, 509
BseLI	CCNNNNNNNGG	2 cut(s)	203, 380
BseRI	GAGGAG	8 cut(s)	339, 457, 487, 490, 493, 496, 505, 508
BseSI	GKGCMC	1 cut(s)	317
BseXI	GCAGC	2 cut(s)	263, 437
Bsh1236I	CGCG	2 cut(s)	369, 381
BshFI	GGCC	3 cut(s)	78, 196, 297
BsiHKAI	GWGCWC	1 cut(s)	317
BsiSI	CCGG	1 cut(s)	488
BslFI	GGGAC	2 cut(s)	7, 150
BslI	CCNNNNNNNGG	2 cut(s)	203, 380
BsmAI	GTCTC	1 cut(s)	203
BsmFI	GGGAC	2 cut(s)	7, 150
BsnI	GGCC	3 cut(s)	78, 196, 297
Bso31I	GGTCTC	1 cut(s)	203
Bsp119I	TTCGAA	1 cut(s)	536
Bsp1286I	GDGCHC	2 cut(s)	317, 375
Bsp143I	GATC	1 cut(s)	46
Bsp19I	CCATGG	2 cut(s)	213, 779
BspACI	CCGC	4 cut(s)	359, 381, 446, 471
BspANI	GGCC	3 cut(s)	78, 196, 297
BspFNI	CGCG	2 cut(s)	369, 381
BspLI	GGNNCC	1 cut(s)	466
BspT104I	TTCGAA	1 cut(s)	536
BspTNI	GGTCTC	1 cut(s)	203
BssECI	CCNNGG	3 cut(s)	213, 417, 779
BssMI	GATC	1 cut(s)	46
BssT1I	CCWWGG	2 cut(s)	213, 779
Bst4CI	ACNGT	2 cut(s)	32, 531
BstBAI	YACGTR	2 cut(s)	97, 312
BstBI	TTCGAA	1 cut(s)	536
BstC8I	GCNNGC	3 cut(s)	76, 371, 432
BstDEI	CTNAG	4 cut(s)	50, 191, 300, 703
BstDSI	CCRYGG	3 cut(s)	213, 417, 779
BstF5I	GGATG	3 cut(s)	145, 150, 509
BstFNI	CGCG	2 cut(s)	369, 381
BstH2I	RGCGCY	1 cut(s)	431
BstHHI	GCGC	1 cut(s)	430
BstKTI	GATC	1 cut(s)	49
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	1 cut(s)	46
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 431, 484
BstNSI	RCATGY	3 cut(s)	42, 162, 790
BstPAI	GACNNNNGTC	1 cut(s)	19
BstSLI	GKGCMC	1 cut(s)	317
BstUI	CGCG	2 cut(s)	369, 381
BstV1I	GCAGC	2 cut(s)	263, 437
BstV2I	GAAGAC	1 cut(s)	525
BsuRI	GGCC	3 cut(s)	78, 196, 297
BtgI	CCRYGG	3 cut(s)	213, 417, 779
BtsCI	GGATG	3 cut(s)	145, 150, 509
Cac8I	GCNNGC	3 cut(s)	76, 371, 432
CfoI	GCGC	1 cut(s)	430
Cfr13I	GGNCC	2 cut(s)	296, 490
Csp6I	GTAC	1 cut(s)	460
CviAII	CATG	9 cut(s)	39, 159, 214, 256, 280, 578, 602, 780, 787
CviQI	GTAC	1 cut(s)	460
DdeI	CTNAG	4 cut(s)	50, 191, 300, 703
DpnI	GATC	1 cut(s)	48
DpnII	GATC	1 cut(s)	46
EaeI	YGGCCR	1 cut(s)	76
EciI	GGCGGA	2 cut(s)	374, 460
Eco130I	CCWWGG	2 cut(s)	213, 779
Eco24I	GRGCYC	1 cut(s)	375
Eco31I	GGTCTC	1 cut(s)	203
Eco47I	GGWCC	1 cut(s)	490
Eco47III	AGCGCT	1 cut(s)	429
Eco72I	CACGTG	1 cut(s)	97
EcoO109I	RGGNCCY	1 cut(s)	296
EcoRI	GAATTC	1 cut(s)	698
EcoT14I	CCWWGG	2 cut(s)	213, 779
EcoT22I	ATGCAT	1 cut(s)	603
EcoT38I	GRGCYC	1 cut(s)	375
ErhI	CCWWGG	2 cut(s)	213, 779
FaeI	CATG	9 cut(s)	42, 162, 217, 259, 283, 581, 605, 783, 790
FalI	AAGNNNNNCTT	4 cut(s)	121, 153, 467, 499
FaqI	GGGAC	2 cut(s)	7, 150
FatI	CATG	9 cut(s)	38, 158, 213, 255, 279, 577, 601, 779, 786
Fnu4HI	GCNGC	3 cut(s)	277, 426, 447
FokI	GGATG	3 cut(s)	132, 137, 496
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	3 cut(s)	277, 426, 447
FspBI	CTAG	4 cut(s)	12, 63, 387, 398
GlaI	GCGC	1 cut(s)	429
GluI	GCNGC	3 cut(s)	277, 426, 447
GsuI	CTGGAG	1 cut(s)	699
HaeII	RGCGCY	1 cut(s)	431
HaeIII	GGCC	3 cut(s)	78, 196, 297
HapII	CCGG	1 cut(s)	488
HhaI	GCGC	1 cut(s)	430
Hin1II	CATG	9 cut(s)	42, 162, 217, 259, 283, 581, 605, 783, 790
Hin6I	GCGC	1 cut(s)	428
HinP1I	GCGC	1 cut(s)	428
HindIII	AAGCTT	1 cut(s)	582
HinfI	GANTC	1 cut(s)	327
HpaII	CCGG	1 cut(s)	488
HphI	GGTGA	5 cut(s)	218, 250, 519, 578, 605
Hpy166II	GTNNAC	3 cut(s)	102, 315, 569
Hpy188I	TCNGA	1 cut(s)	323
Hpy188III	TCNNGA	2 cut(s)	267, 678
Hpy8I	GTNNAC	3 cut(s)	102, 315, 569
HpyAV	CCTTC	2 cut(s)	255, 283
HpyCH4III	ACNGT	2 cut(s)	32, 531
HpyCH4IV	ACGT	2 cut(s)	96, 311
HpyCH4V	TGCA	4 cut(s)	158, 279, 315, 601
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 431, 484
HpyF3I	CTNAG	4 cut(s)	50, 191, 300, 703
HpySE526I	ACGT	2 cut(s)	96, 311
Hsp92II	CATG	9 cut(s)	42, 162, 217, 259, 283, 581, 605, 783, 790
HspAI	GCGC	1 cut(s)	428
Kzo9I	GATC	1 cut(s)	46
LmnI	GCTCC	3 cut(s)	470, 781, 783
Lsp1109I	GCAGC	2 cut(s)	263, 437
LweI	GCATC	1 cut(s)	433
MaeI	CTAG	4 cut(s)	12, 63, 387, 398
MaeII	ACGT	2 cut(s)	96, 311
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	1 cut(s)	48
MboI	GATC	1 cut(s)	46
MboII	GAAGA	3 cut(s)	256, 525, 782
MhlI	GDGCHC	2 cut(s)	317, 375
MlsI	TGGCCA	1 cut(s)	78
MluCI	AATT	2 cut(s)	698, 723
MluNI	TGGCCA	1 cut(s)	78
MlyI	GAGTC	1 cut(s)	336
MmeI	TCCRAC	1 cut(s)	590
Mox20I	TGGCCA	1 cut(s)	78
Mph1103I	ATGCAT	1 cut(s)	603
MscI	TGGCCA	1 cut(s)	78
MslI	CAYNNNNRTG	1 cut(s)	576
Msp20I	TGGCCA	1 cut(s)	78
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	1 cut(s)	488
MvnI	CGCG	2 cut(s)	369, 381
MwoI	GCNNNNNNNGC	3 cut(s)	80, 431, 484
NcoI	CCATGG	2 cut(s)	213, 779
NdeII	GATC	1 cut(s)	46
NlaIII	CATG	9 cut(s)	42, 162, 217, 259, 283, 581, 605, 783, 790
NlaIV	GGNNCC	1 cut(s)	466
NmuCI	GTSAC	1 cut(s)	238
NsiI	ATGCAT	1 cut(s)	603
NspI	RCATGY	3 cut(s)	42, 162, 790
NspV	TTCGAA	1 cut(s)	536
PciI	ACATGT	1 cut(s)	38
PkrI	GCNGC	3 cut(s)	278, 427, 448
PleI	GAGTC	1 cut(s)	335
PmaCI	CACGTG	1 cut(s)	97
PmlI	CACGTG	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	335
Ppu21I	YACGTR	2 cut(s)	97, 312
PscI	ACATGT	1 cut(s)	38
PshAI	GACNNNNGTC	1 cut(s)	19
PspCI	CACGTG	1 cut(s)	97
PspN4I	GGNNCC	1 cut(s)	466
PspPI	GGNCC	2 cut(s)	296, 490
PvuII	CAGCTG	1 cut(s)	74
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
RseI	CAYNNNNRTG	1 cut(s)	576
SatI	GCNGC	3 cut(s)	277, 426, 447
Sau3AI	GATC	1 cut(s)	46
Sau96I	GGNCC	2 cut(s)	296, 490
SchI	GAGTC	1 cut(s)	336
SduI	GDGCHC	2 cut(s)	317, 375
SfaNI	GCATC	1 cut(s)	433
SfuI	TTCGAA	1 cut(s)	536
SinI	GGWCC	1 cut(s)	490
SmiMI	CAYNNNNRTG	1 cut(s)	576
Sse9I	AATT	2 cut(s)	698, 723
SsiI	CCGC	4 cut(s)	359, 381, 446, 471
SspMI	CTAG	4 cut(s)	12, 63, 387, 398
StyI	CCWWGG	2 cut(s)	213, 779
TaaI	ACNGT	2 cut(s)	32, 531
TaiI	ACGT	2 cut(s)	99, 314
TaqI	TCGA	3 cut(s)	266, 451, 536
TasI	AATT	2 cut(s)	698, 723
TauI	GCSGC	1 cut(s)	449
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	2 cut(s)	276, 425
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	2 cut(s)	296, 594
TspGWI	ACGGA	1 cut(s)	434
VneI	GTGCAC	1 cut(s)	313
VpaK11BI	GGWCC	1 cut(s)	490
XapI	RAATTY	1 cut(s)	698
XceI	RCATGY	3 cut(s)	42, 162, 790
XspI	CTAG	4 cut(s)	12, 63, 387, 398
Zsp2I	ATGCAT	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.