Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010026

Physical Location & Seq

Genomic Coordinates Forward (+)

4280657 .. 4284376

Gene Structure 3720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g07100.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCGACGAGGAATCGGACTCCGCTCTTCAGAAAGTACCGGGATTCGTTGAAGAGCGCCCGCGCTCCGTTGAGCTCGTTGGCGTCCACCAGCTCCGGCGGGAGAGGTCCGGTGATTGAATTGTCGTCGCTTGTGAATCAGAATCGGAACTATGCTCCGCTCAGTACTGAAGATCCCGGTAATTCAAGTCAGGGTGCACTCACTGTTGGTCTACCGCCAGCATGGGTGGATGTATCAGAAGAAATAGCAGTGAATGTGCAGCAGGCACGGGTAAAAATGTCTGAGCTGTCCAAGGCTCATGCAAAGGCTTTGATGCCATCTTTTGGAGATGAGAAGAAAGATCAACGCTTGATTGAGAGTCTTACACAAGAGATAACTGGATTAATAACGAGATCCCAGAAGAGACTACAAAGACTTTCTGCAGCTGGACCTTCAGAAGATGCAAATGTTAGAAAGAATGTGCAGGTATCTCTTGCTACAGACCTTCAGAGCCTCTCTAATGAGCTTCGTAAGAAACAATCAAATTATTTGAAACGCCTCAAACAGCAAACAGAGGGACAAGATGGGGACGACCTTGAGATGAACCTAAATGGAAGTAGATCAAGAATGGACGGTGATGATTTGGATGAAATAATGTTTCACGATCGTGAGACGGCCCAGCTTAAGAAACATGAAGCATTCACAGCAGAAAGGGAAAGAGAGATTCATCAGGTTGTTGAATCTGTGAATGAGCTTGCTCAGATTATGAAGGACCTGTCGGTTCTAGTGATAGACCAGGGCACTATTGTTGATAGGATAGACTACAACATTCAGAACGTTGCAAGTACAGTCGAGGATGGCCTCAAGCAATTGCAAAAGGCTGAGAGAACACAGAAACAAGGAGGAATGGTGATGTGTGCTACAGTACTTGTTATCATGTGTGCTGTCATGTTGGTTCTCCTAGTTCTCAAGGAGATACTTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0002790 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006906 GO:0006996 GO:0007030 GO:0007034 GO:0008104 GO:0008150 GO:0009306 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032588 GO:0032940 GO:0032991 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

322

Amino Acids

35.66

Weight (kDa)

6.48

Isoelectric Point (pI)

50.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05710 AT3G05710 AT5G26980 AT5G26980 AT5G26980
fragaria_vesca	FvH4_6g07100 FvH4_6g07100 FvH4_6g07100
malus_domestica	MD04G1196100.v1.1 MD12G1209100.v1.1
prunus_persica	Prupe.6G316200_v2.0.a1
pyrus_communis	pycom12g19630
rosa_chinensis	RchiOBHm_Chr3g0456681
rosa_laevigata	RLG00000025284
rosa_roxburghii	Rroxscaffold_11G00450400 Rroxscaffold_6G00422540
rosa_rugosa	Rorug03G0015000
rosa_samantha	Rh3AG075500 Rh3BG077400 Rh3DG079100
rosa_wichuraiana	Rw3G006470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	454
AccB7I	CCANNNNNTGG	1 cut(s)	323
AccBSI	CCGCTC	2 cut(s)	25, 160
AccI	GTMKAC	1 cut(s)	211
AccII	CGCG	1 cut(s)	63
AciI	CCGC	5 cut(s)	23, 61, 99, 158, 215
AclI	AACGTT	1 cut(s)	816
AclWI	GGATC	2 cut(s)	167, 387
AcuI	CTGAAG	4 cut(s)	13, 189, 417, 470
AcyI	GRCGYC	1 cut(s)	83
AfaI	GTAC	4 cut(s)	38, 166, 826, 906
AfiI	CCNNNNNNNGG	1 cut(s)	323
AflII	CTTAAG	1 cut(s)	662
AgsI	TTSAA	5 cut(s)	52, 119, 186, 532, 719
AjnI	CCWGG	1 cut(s)	774
AleI	CACNNNNGTG	1 cut(s)	645
AluBI	AGCT	7 cut(s)	75, 93, 286, 425, 505, 661, 733
AluI	AGCT	7 cut(s)	75, 93, 286, 425, 505, 661, 733
Alw21I	GWGCWC	2 cut(s)	77, 199
Alw26I	GTCTC	2 cut(s)	397, 644
Alw44I	GTGCAC	1 cut(s)	195
AlwI	GGATC	2 cut(s)	167, 387
AoxI	GGCC	2 cut(s)	654, 838
ApaLI	GTGCAC	1 cut(s)	195
ApeKI	GCWGC	2 cut(s)	259, 422
AseI	ATTAAT	1 cut(s)	383
AspLEI	GCGC	2 cut(s)	59, 65
AspS9I	GGNCC	4 cut(s)	107, 428, 655, 751
AsuC2I	CCSGG	2 cut(s)	41, 177
AsuHPI	GGTGA	3 cut(s)	124, 626, 901
AvaII	GGWCC	3 cut(s)	107, 428, 751
BaeGI	GKGCMC	2 cut(s)	199, 782
BanII	GRGCYC	1 cut(s)	77
Bbv12I	GWGCWC	2 cut(s)	77, 199
BbvI	GCAGC	2 cut(s)	271, 434
BccI	CCATC	3 cut(s)	325, 557, 830
BceAI	ACGGC	1 cut(s)	669
BciT130I	CCWGG	1 cut(s)	776
BcnI	CCSGG	2 cut(s)	41, 177
BcoDI	GTCTC	2 cut(s)	397, 644
BfaI	CTAG	2 cut(s)	764, 941
BfmI	CTRYAG	3 cut(s)	420, 477, 900
BfoI	RGCGCY	1 cut(s)	60
BfrI	CTTAAG	1 cut(s)	662
BfuAI	ACCTGC	1 cut(s)	454
BisI	GCNGC	2 cut(s)	260, 423
BlsI	GCNGC	2 cut(s)	261, 424
BmcAI	AGTACT	2 cut(s)	166, 906
Bme1390I	CCNGG	3 cut(s)	41, 177, 776
Bme18I	GGWCC	3 cut(s)	107, 428, 751
BmgT120I	GGNCC	4 cut(s)	107, 428, 655, 751
BmrFI	CCNGG	3 cut(s)	41, 177, 776
BmsI	GCATC	2 cut(s)	303, 430
BpuEI	CTTGAG	3 cut(s)	596, 827, 932
BpuMI	CCSGG	2 cut(s)	41, 177
BsaHI	GRCGYC	1 cut(s)	83
BsaJI	CCNNGG	2 cut(s)	291, 775
BsaWI	WCCGGW	1 cut(s)	109
BsaXI	ACNNNNNCTCC	2 cut(s)	873, 903
Bsc4I	CCNNNNNNNGG	1 cut(s)	323
Bse1I	ACTGG	1 cut(s)	382
BseBI	CCWGG	1 cut(s)	776
BseDI	CCNNGG	2 cut(s)	291, 775
BseGI	GGATG	3 cut(s)	235, 631, 841
BseLI	CCNNNNNNNGG	1 cut(s)	323
BseMII	CTCAG	4 cut(s)	175, 273, 752, 852
BseNI	ACTGG	1 cut(s)	382
BseSI	GKGCMC	2 cut(s)	199, 782
BseXI	GCAGC	2 cut(s)	271, 434
BseYI	CCCAGC	1 cut(s)	657
BsgI	GTGCAG	2 cut(s)	278, 482
Bsh1236I	CGCG	1 cut(s)	63
Bsh1285I	CGRYCG	1 cut(s)	646
BshFI	GGCC	2 cut(s)	656, 840
BsiEI	CGRYCG	1 cut(s)	646
BsiHKAI	GWGCWC	2 cut(s)	77, 199
BsiSI	CCGG	4 cut(s)	40, 96, 110, 177
BslFI	GGGAC	2 cut(s)	570, 581
BslI	CCNNNNNNNGG	1 cut(s)	323
BsmAI	GTCTC	2 cut(s)	397, 644
BsmBI	CGTCTC	1 cut(s)	644
BsmFI	GGGAC	2 cut(s)	570, 581
BsmI	GAATGC	1 cut(s)	677
BsnI	GGCC	2 cut(s)	656, 840
Bsp1286I	GDGCHC	3 cut(s)	77, 199, 782
Bsp143I	GATC	5 cut(s)	172, 340, 392, 599, 643
BspACI	CCGC	5 cut(s)	23, 61, 99, 158, 215
BspANI	GGCC	2 cut(s)	656, 840
BspCNI	CTCAG	4 cut(s)	174, 274, 751, 853
BspFNI	CGCG	1 cut(s)	63
BspMAI	CTGCAG	1 cut(s)	424
BspMI	ACCTGC	1 cut(s)	454
BspPI	GGATC	2 cut(s)	167, 387
BspQI	GCTCTTC	2 cut(s)	32, 47
BspTI	CTTAAG	1 cut(s)	662
BsrBI	CCGCTC	2 cut(s)	25, 160
BsrI	ACTGG	1 cut(s)	382
BssECI	CCNNGG	2 cut(s)	291, 775
BssMI	GATC	5 cut(s)	172, 340, 392, 599, 643
BssNI	GRCGYC	1 cut(s)	83
BssT1I	CCWWGG	1 cut(s)	291
Bst2UI	CCWGG	1 cut(s)	776
Bst4CI	ACNGT	4 cut(s)	205, 614, 829, 904
Bst6I	CTCTTC	3 cut(s)	32, 47, 395
BstACI	GRCGYC	1 cut(s)	83
BstAFI	CTTAAG	1 cut(s)	662
BstC8I	GCNNGC	4 cut(s)	61, 219, 264, 735
BstDEI	CTNAG	4 cut(s)	161, 282, 738, 861
BstF5I	GGATG	3 cut(s)	235, 631, 841
BstFNI	CGCG	1 cut(s)	63
BstH2I	RGCGCY	1 cut(s)	60
BstHHI	GCGC	2 cut(s)	59, 65
BstKTI	GATC	5 cut(s)	175, 343, 395, 602, 646
BstMAI	GTCTC	2 cut(s)	397, 644
BstMBI	GATC	5 cut(s)	172, 340, 392, 599, 643
BstMCI	CGRYCG	1 cut(s)	646
BstMWI	GCNNNNNNNGC	1 cut(s)	683
BstNI	CCWGG	1 cut(s)	776
BstSCI	CCNGG	3 cut(s)	39, 175, 774
BstSFI	CTRYAG	3 cut(s)	420, 477, 900
BstSLI	GKGCMC	2 cut(s)	199, 782
BstUI	CGCG	1 cut(s)	63
BstV1I	GCAGC	2 cut(s)	271, 434
BstX2I	RGATCY	2 cut(s)	172, 392
BstYI	RGATCY	2 cut(s)	172, 392
BsuRI	GGCC	2 cut(s)	656, 840
BtsCI	GGATG	3 cut(s)	235, 631, 841
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	2 cut(s)	201, 255
BveI	ACCTGC	1 cut(s)	454
Cac8I	GCNNGC	4 cut(s)	61, 219, 264, 735
CfoI	GCGC	2 cut(s)	59, 65
Cfr13I	GGNCC	4 cut(s)	107, 428, 655, 751
CseI	GACGC	1 cut(s)	72
Csp6I	GTAC	4 cut(s)	37, 165, 825, 905
CviAII	CATG	5 cut(s)	222, 299, 671, 916, 928
CviQI	GTAC	4 cut(s)	37, 165, 825, 905
DdeI	CTNAG	4 cut(s)	161, 282, 738, 861
DpnI	GATC	5 cut(s)	174, 342, 394, 601, 645
DpnII	GATC	5 cut(s)	172, 340, 392, 599, 643
Eam1104I	CTCTTC	3 cut(s)	32, 47, 395
EarI	CTCTTC	3 cut(s)	32, 47, 395
Ecl136II	GAGCTC	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	291
Eco24I	GRGCYC	1 cut(s)	77
Eco47I	GGWCC	3 cut(s)	107, 428, 751
Eco53kI	GAGCTC	1 cut(s)	75
Eco57I	CTGAAG	4 cut(s)	13, 189, 417, 470
EcoICRI	GAGCTC	1 cut(s)	75
EcoO109I	RGGNCCY	1 cut(s)	751
EcoRII	CCWGG	1 cut(s)	774
EcoT14I	CCWWGG	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	291
Esp3I	CGTCTC	1 cut(s)	644
FaeI	CATG	5 cut(s)	225, 302, 674, 919, 931
FaiI	YATR	7 cut(s)	153, 223, 300, 672, 746, 917, 929
FaqI	GGGAC	2 cut(s)	570, 581
FatI	CATG	5 cut(s)	221, 298, 670, 915, 927
FauI	CCCGC	2 cut(s)	68, 92
FblI	GTMKAC	1 cut(s)	211
Fnu4HI	GCNGC	2 cut(s)	260, 423
FokI	GGATG	3 cut(s)	242, 638, 848
FriOI	GRGCYC	1 cut(s)	77
Fsp4HI	GCNGC	2 cut(s)	260, 423
FspBI	CTAG	2 cut(s)	764, 941
GlaI	GCGC	2 cut(s)	58, 64
GluI	GCNGC	2 cut(s)	260, 423
GsaI	CCCAGC	1 cut(s)	661
HaeII	RGCGCY	1 cut(s)	60
HaeIII	GGCC	2 cut(s)	656, 840
HapII	CCGG	4 cut(s)	40, 96, 110, 177
HgaI	GACGC	1 cut(s)	72
HhaI	GCGC	2 cut(s)	59, 65
Hin1I	GRCGYC	1 cut(s)	83
Hin1II	CATG	5 cut(s)	225, 302, 674, 919, 931
Hin6I	GCGC	2 cut(s)	57, 63
HinP1I	GCGC	2 cut(s)	57, 63
HinfI	GANTC	8 cut(s)	13, 19, 44, 136, 142, 358, 703, 719
HpaII	CCGG	4 cut(s)	40, 96, 110, 177
HphI	GGTGA	3 cut(s)	124, 626, 901
Hpy166II	GTNNAC	3 cut(s)	87, 197, 212
Hpy188III	TCNNGA	3 cut(s)	603, 641, 647
Hpy8I	GTNNAC	3 cut(s)	87, 197, 212
Hpy99I	CGWCG	2 cut(s)	10, 130
HpyAV	CCTTC	3 cut(s)	441, 494, 742
HpyCH4III	ACNGT	4 cut(s)	205, 614, 829, 904
HpyCH4IV	ACGT	1 cut(s)	816
HpyCH4V	TGCA	8 cut(s)	197, 259, 302, 422, 443, 463, 821, 853
HpyF10VI	GCNNNNNNNGC	1 cut(s)	683
HpyF3I	CTNAG	4 cut(s)	161, 282, 738, 861
HpySE526I	ACGT	1 cut(s)	816
Hsp92I	GRCGYC	1 cut(s)	83
Hsp92II	CATG	5 cut(s)	225, 302, 674, 919, 931
HspAI	GCGC	2 cut(s)	57, 63
Kzo9I	GATC	5 cut(s)	172, 340, 392, 599, 643
LguI	GCTCTTC	2 cut(s)	32, 47
LmnI	GCTCC	3 cut(s)	70, 98, 160
Lsp1109I	GCAGC	2 cut(s)	271, 434
LweI	GCATC	2 cut(s)	303, 430
MaeI	CTAG	2 cut(s)	764, 941
MaeII	ACGT	1 cut(s)	816
MalI	GATC	5 cut(s)	174, 342, 394, 601, 645
MbiI	CCGCTC	2 cut(s)	25, 160
MboI	GATC	5 cut(s)	172, 340, 392, 599, 643
MboII	GAAGA	7 cut(s)	19, 64, 182, 251, 346, 412, 449
MfeI	CAATTG	1 cut(s)	848
MflI	RGATCY	2 cut(s)	172, 392
MhlI	GDGCHC	3 cut(s)	77, 199, 782
MluCI	AATT	4 cut(s)	119, 181, 523, 848
MlyI	GAGTC	2 cut(s)	13, 367
MnlI	CCTC	8 cut(s)	3, 98, 503, 547, 548, 826, 851, 875
MseI	TTAA	2 cut(s)	383, 663
MslI	CAYNNNNRTG	1 cut(s)	645
MspA1I	CMGCKG	1 cut(s)	425
MspCI	CTTAAG	1 cut(s)	662
MspI	CCGG	4 cut(s)	40, 96, 110, 177
MspR9I	CCNGG	3 cut(s)	41, 177, 776
MunI	CAATTG	1 cut(s)	848
Mva1269I	GAATGC	1 cut(s)	677
MvaI	CCWGG	1 cut(s)	776
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	1 cut(s)	683
NciI	CCSGG	2 cut(s)	41, 177
NdeII	GATC	5 cut(s)	172, 340, 392, 599, 643
NlaIII	CATG	5 cut(s)	225, 302, 674, 919, 931
OliI	CACNNNNGTG	1 cut(s)	645
PciSI	GCTCTTC	2 cut(s)	32, 47
PctI	GAATGC	1 cut(s)	677
PfeI	GAWTC	6 cut(s)	13, 44, 136, 142, 703, 719
PflMI	CCANNNNNTGG	1 cut(s)	323
PkrI	GCNGC	2 cut(s)	261, 424
Ple19I	CGATCG	1 cut(s)	646
PleI	GAGTC	2 cut(s)	13, 366
PpsI	GAGTC	2 cut(s)	13, 366
PpuMI	RGGWCCY	1 cut(s)	751
PshBI	ATTAAT	1 cut(s)	383
Psp124BI	GAGCTC	1 cut(s)	77
Psp1406I	AACGTT	1 cut(s)	816
Psp5II	RGGWCCY	1 cut(s)	751
Psp6I	CCWGG	1 cut(s)	774
PspFI	CCCAGC	1 cut(s)	657
PspGI	CCWGG	1 cut(s)	774
PspPI	GGNCC	4 cut(s)	107, 428, 655, 751
PspPPI	RGGWCCY	1 cut(s)	751
PstI	CTGCAG	1 cut(s)	424
PsuI	RGATCY	2 cut(s)	172, 392
PvuI	CGATCG	1 cut(s)	646
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	4 cut(s)	38, 166, 826, 906
RsaNI	GTAC	4 cut(s)	37, 165, 825, 905
RseI	CAYNNNNRTG	1 cut(s)	645
SacI	GAGCTC	1 cut(s)	77
SapI	GCTCTTC	2 cut(s)	32, 47
SaqAI	TTAA	2 cut(s)	383, 663
SatI	GCNGC	2 cut(s)	260, 423
Sau3AI	GATC	5 cut(s)	172, 340, 392, 599, 643
Sau96I	GGNCC	4 cut(s)	107, 428, 655, 751
ScaI	AGTACT	2 cut(s)	166, 906
SchI	GAGTC	2 cut(s)	13, 367
ScrFI	CCNGG	3 cut(s)	41, 177, 776
SduI	GDGCHC	3 cut(s)	77, 199, 782
SfaNI	GCATC	2 cut(s)	303, 430
SfcI	CTRYAG	3 cut(s)	420, 477, 900
SinI	GGWCC	3 cut(s)	107, 428, 751
SmiMI	CAYNNNNRTG	1 cut(s)	645
SmlI	CTYRAG	4 cut(s)	575, 662, 842, 947
SmoI	CTYRAG	4 cut(s)	575, 662, 842, 947
Sse9I	AATT	4 cut(s)	119, 181, 523, 848
SsiI	CCGC	5 cut(s)	23, 61, 99, 158, 215
SspMI	CTAG	2 cut(s)	764, 941
SstI	GAGCTC	1 cut(s)	77
StyD4I	CCNGG	3 cut(s)	39, 175, 774
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	4 cut(s)	205, 614, 829, 904
TaiI	ACGT	1 cut(s)	819
TaqI	TCGA	1 cut(s)	831
TasI	AATT	4 cut(s)	119, 181, 523, 848
TatI	WGTACW	3 cut(s)	164, 824, 904
TfiI	GAWTC	6 cut(s)	13, 44, 136, 142, 703, 719
Tru1I	TTAA	2 cut(s)	383, 663
Tru9I	TTAA	2 cut(s)	383, 663
TscAI	CASTG	2 cut(s)	208, 255
TseI	GCWGC	2 cut(s)	259, 422
TspDTI	ATGAA	5 cut(s)	596, 642, 687, 695, 761
TspGWI	ACGGA	1 cut(s)	57
TspRI	CASTG	2 cut(s)	208, 255
Van91I	CCANNNNNTGG	1 cut(s)	323
Vha464I	CTTAAG	1 cut(s)	662
VneI	GTGCAC	1 cut(s)	195
VpaK11BI	GGWCC	3 cut(s)	107, 428, 751
VspI	ATTAAT	1 cut(s)	383
XmiI	GTMKAC	1 cut(s)	211
XspI	CTAG	2 cut(s)	764, 941
ZrmI	AGTACT	2 cut(s)	166, 906

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.