Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0010026

Physical Location & Seq

Genomic Coordinates Reverse (-)

28156079 .. 28159450

Gene Structure 3372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G316200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCGACGAGGAACCGGACCTTGCTTTATAGGAAGTACAGGGATGCGTTGAAGACCGTCCGCGCTCCGACGAGCTCGTCCGCTTCGACGTCCACCAGCTCCGGCGGTGGTCCGGTCATTGAATTGGTCAGCACTTCGCTTCTGCATCCGAATCGGTCTTATGCTCCGCTCAGTACTGAGGATCCCAGTAATTCAAGTAAGGGTGCACTTACTGTTGGTCTACCACCGGCATGGGTGGATCTATCTGAAGAAATAGCAGTAAATGTGCAGCGTGCAAGGGTAAAAATGGCTGAGCTGAACAAGGCTCATGCAAAGGCTTTAATGCCTTCATTTGGAGACGGTAAAGAAGATCAACGCTTGATTGAGGGTCTTACGCAAGAGATAACTAGTCTGATCAGGAAATCTGAGAAGAGACTACAGAGACTCTCTGCAGCTGGGCCTTCTGAAGATTCAAATGTTAGAAAAAATGTGCAGCGATCTCTTGCCACTGACCTTCAGAACCTCTCAATGGAACTTCGCAAGAAACAGTCAACTTATTTGAAGCGTCTCAGGCAGCAAGCAGAGGGTCAGGATGGGGATGATTTAGAGATGAACCTAAATGAAAATAGATCCAGAATGGATGGTGACGATTTGGATGACATGATGTTTAATGAGCGTCAGATGGCCAAGCTAAAGAAAAGCGAAGCGTTCACAGCAGAAAGGGAAAGGGAGATCCAACAGGTTGTGGAATCTGTGAATGAACTTGCTCAGATTATGAAGGATTTGTCAGTACTAGTGATAGACCAGGGAACTATTGTTGATAGGATAGACTACAACATTCAGAATGTAGCAAGTACAGTTGAGGATGGCCTCAAGCAATTGCAAAAGGCTGAGAAAACACAGAAACAAGGGGGAATGGTGATGTGTGCTACAGTACTTGTTATCATGTGCTTTATCATGCTGGTCCTCCTAATCCTCAAGGAGATATTCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0002790 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006906 GO:0006996 GO:0007030 GO:0007034 GO:0008104 GO:0008150 GO:0009306 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032588 GO:0032940 GO:0032991 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

325

Amino Acids

36.18

Weight (kDa)

7.69

Isoelectric Point (pI)

49.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05710 AT3G05710 AT5G26980 AT5G26980 AT5G26980
fragaria_vesca	FvH4_6g07100 FvH4_6g07100 FvH4_6g07100
malus_domestica	MD04G1196100.v1.1 MD12G1209100.v1.1
prunus_persica	Prupe.6G316200_v2.0.a1
pyrus_communis	pycom12g19630
rosa_chinensis	RchiOBHm_Chr3g0456681
rosa_laevigata	RLG00000025284
rosa_roxburghii	Rroxscaffold_11G00450400 Rroxscaffold_6G00422540
rosa_rugosa	Rorug03G0015000
rosa_samantha	Rh3AG075500 Rh3BG077400 Rh3DG079100
rosa_wichuraiana	Rw3G006470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	76
AatII	GACGTC	1 cut(s)	92
AccBSI	CCGCTC	1 cut(s)	169
AccI	GTMKAC	1 cut(s)	220
AccII	CGCG	1 cut(s)	63
AciI	CCGC	4 cut(s)	61, 81, 105, 167
AclWI	GGATC	5 cut(s)	176, 189, 246, 603, 706
AcoI	YGGCCR	1 cut(s)	663
AcuI	CTGAAG	3 cut(s)	267, 465, 479
AcyI	GRCGYC	1 cut(s)	89
AfaI	GTAC	5 cut(s)	38, 175, 771, 835, 915
AfiI	CCNNNNNNNGG	2 cut(s)	332, 508
AgsI	TTSAA	5 cut(s)	52, 122, 195, 453, 541
AhlI	ACTAGT	2 cut(s)	386, 772
AjnI	CCWGG	1 cut(s)	783
AluBI	AGCT	5 cut(s)	75, 99, 295, 434, 670
AluI	AGCT	5 cut(s)	75, 99, 295, 434, 670
Alw21I	GWGCWC	2 cut(s)	77, 208
Alw26I	GTCTC	4 cut(s)	330, 406, 415, 551
Alw44I	GTGCAC	1 cut(s)	204
AlwI	GGATC	5 cut(s)	176, 189, 246, 603, 706
AoxI	GGCC	3 cut(s)	437, 663, 847
ApaLI	GTGCAC	1 cut(s)	204
ApeKI	GCWGC	4 cut(s)	268, 431, 472, 553
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	4 cut(s)	18, 110, 437, 943
AsuHPI	GGTGA	2 cut(s)	635, 910
AvaII	GGWCC	3 cut(s)	18, 110, 943
BaeGI	GKGCMC	1 cut(s)	208
BalI	TGGCCA	1 cut(s)	665
BamHI	GGATCC	1 cut(s)	181
BanII	GRGCYC	1 cut(s)	77
BbsI	GAAGAC	1 cut(s)	59
Bbv12I	GWGCWC	2 cut(s)	77, 208
BbvI	GCAGC	4 cut(s)	280, 443, 484, 565
BccI	CCATC	4 cut(s)	566, 614, 655, 839
BcgI	CGANNNNNNTGC	2 cut(s)	134, 168
BciT130I	CCWGG	1 cut(s)	785
BclI	TGATCA	1 cut(s)	393
BcoDI	GTCTC	4 cut(s)	330, 406, 415, 551
BcuI	ACTAGT	2 cut(s)	386, 772
BfaI	CTAG	2 cut(s)	387, 773
BfmI	CTRYAG	3 cut(s)	416, 429, 909
BisI	GCNGC	4 cut(s)	269, 432, 473, 554
BlpI	GCTNAGC	1 cut(s)	291
BlsI	GCNGC	4 cut(s)	270, 433, 474, 555
BmcAI	AGTACT	3 cut(s)	175, 771, 915
Bme1390I	CCNGG	1 cut(s)	785
Bme18I	GGWCC	3 cut(s)	18, 110, 943
BmgT120I	GGNCC	4 cut(s)	18, 110, 437, 943
BmiI	GGNNCC	2 cut(s)	14, 183
BmrFI	CCNGG	1 cut(s)	785
BmrI	ACTGGG	1 cut(s)	180
BmsI	GCATC	2 cut(s)	34, 154
BmuI	ACTGGG	1 cut(s)	180
BpiI	GAAGAC	1 cut(s)	59
Bpu1102I	GCTNAGC	1 cut(s)	291
BpuEI	CTTGAG	2 cut(s)	836, 941
BsaHI	GRCGYC	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	784
BsaWI	WCCGGW	2 cut(s)	15, 112
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 508
Bse118I	RCCGGY	1 cut(s)	226
Bse1I	ACTGG	1 cut(s)	186
BseBI	CCWGG	1 cut(s)	785
BseDI	CCNNGG	1 cut(s)	784
BseGI	GGATG	7 cut(s)	49, 145, 577, 583, 625, 640, 850
BseLI	CCNNNNNNNGG	2 cut(s)	332, 508
BseMII	CTCAG	7 cut(s)	168, 184, 282, 396, 562, 761, 861
BseNI	ACTGG	1 cut(s)	186
BseSI	GKGCMC	1 cut(s)	208
BseXI	GCAGC	4 cut(s)	280, 443, 484, 565
BseYI	CCCAGC	1 cut(s)	434
BsgI	GTGCAG	2 cut(s)	287, 491
Bsh1236I	CGCG	1 cut(s)	63
BshFI	GGCC	3 cut(s)	439, 665, 849
BsiHKAI	GWGCWC	2 cut(s)	77, 208
BsiSI	CCGG	4 cut(s)	16, 102, 113, 227
BslI	CCNNNNNNNGG	2 cut(s)	332, 508
BsmAI	GTCTC	4 cut(s)	330, 406, 415, 551
BsmBI	CGTCTC	2 cut(s)	330, 551
BsnI	GGCC	3 cut(s)	439, 665, 849
Bsp1286I	GDGCHC	2 cut(s)	77, 208
Bsp143I	GATC	7 cut(s)	181, 238, 349, 393, 476, 608, 711
Bsp1720I	GCTNAGC	1 cut(s)	291
BspACI	CCGC	4 cut(s)	61, 81, 105, 167
BspANI	GGCC	3 cut(s)	439, 665, 849
BspCNI	CTCAG	7 cut(s)	169, 183, 283, 397, 561, 760, 862
BspFNI	CGCG	1 cut(s)	63
BspLI	GGNNCC	2 cut(s)	14, 183
BspMAI	CTGCAG	1 cut(s)	433
BspPI	GGATC	5 cut(s)	176, 189, 246, 603, 706
BsrBI	CCGCTC	1 cut(s)	169
BsrFI	RCCGGY	1 cut(s)	226
BsrI	ACTGG	1 cut(s)	186
BssAI	RCCGGY	1 cut(s)	226
BssECI	CCNNGG	1 cut(s)	784
BssMI	GATC	7 cut(s)	181, 238, 349, 393, 476, 608, 711
BssNI	GRCGYC	1 cut(s)	89
Bst2UI	CCWGG	1 cut(s)	785
Bst4CI	ACNGT	6 cut(s)	58, 214, 341, 528, 838, 913
Bst6I	CTCTTC	1 cut(s)	404
BstACI	GRCGYC	1 cut(s)	89
BstC8I	GCNNGC	2 cut(s)	273, 558
BstDEI	CTNAG	7 cut(s)	170, 177, 291, 405, 548, 747, 870
BstF5I	GGATG	7 cut(s)	49, 145, 577, 583, 625, 640, 850
BstFNI	CGCG	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	7 cut(s)	184, 241, 352, 396, 479, 611, 714
BstMAI	GTCTC	4 cut(s)	330, 406, 415, 551
BstMBI	GATC	7 cut(s)	181, 238, 349, 393, 476, 608, 711
BstMWI	GCNNNNNNNGC	2 cut(s)	550, 692
BstNI	CCWGG	1 cut(s)	785
BstSCI	CCNGG	1 cut(s)	783
BstSFI	CTRYAG	3 cut(s)	416, 429, 909
BstSLI	GKGCMC	1 cut(s)	208
BstUI	CGCG	1 cut(s)	63
BstV1I	GCAGC	4 cut(s)	280, 443, 484, 565
BstV2I	GAAGAC	1 cut(s)	59
BstX2I	RGATCY	4 cut(s)	181, 238, 608, 711
BstXI	CCANNNNNNTGG	1 cut(s)	231
BstYI	RGATCY	4 cut(s)	181, 238, 608, 711
BsuRI	GGCC	3 cut(s)	439, 665, 849
BtsCI	GGATG	7 cut(s)	49, 145, 577, 583, 625, 640, 850
BtsIMutI	CAGTG	1 cut(s)	486
Cac8I	GCNNGC	2 cut(s)	273, 558
CfoI	GCGC	1 cut(s)	65
Cfr10I	RCCGGY	1 cut(s)	226
Cfr13I	GGNCC	4 cut(s)	18, 110, 437, 943
CseI	GACGC	2 cut(s)	533, 644
Csp6I	GTAC	5 cut(s)	37, 174, 770, 834, 914
CviAII	CATG	5 cut(s)	231, 308, 640, 925, 937
CviQI	GTAC	5 cut(s)	37, 174, 770, 834, 914
DdeI	CTNAG	7 cut(s)	170, 177, 291, 405, 548, 747, 870
DpnI	GATC	7 cut(s)	183, 240, 351, 395, 478, 610, 713
DpnII	GATC	7 cut(s)	181, 238, 349, 393, 476, 608, 711
DrdI	GACNNNNNNGTC	1 cut(s)	76
DseDI	GACNNNNNNGTC	1 cut(s)	76
EaeI	YGGCCR	1 cut(s)	663
Eam1104I	CTCTTC	1 cut(s)	404
EarI	CTCTTC	1 cut(s)	404
Ecl136II	GAGCTC	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	77
Eco47I	GGWCC	3 cut(s)	18, 110, 943
Eco53kI	GAGCTC	1 cut(s)	75
Eco57I	CTGAAG	3 cut(s)	267, 465, 479
EcoICRI	GAGCTC	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	783
EcoT38I	GRGCYC	1 cut(s)	77
Esp3I	CGTCTC	2 cut(s)	330, 551
FaeI	CATG	5 cut(s)	234, 311, 643, 928, 940
FaiI	YATR	8 cut(s)	30, 162, 232, 309, 641, 755, 926, 938
FatI	CATG	5 cut(s)	230, 307, 639, 924, 936
FbaI	TGATCA	1 cut(s)	393
FblI	GTMKAC	1 cut(s)	220
Fnu4HI	GCNGC	4 cut(s)	269, 432, 473, 554
FokI	GGATG	7 cut(s)	56, 132, 584, 590, 632, 647, 857
FriOI	GRGCYC	1 cut(s)	77
Fsp4HI	GCNGC	4 cut(s)	269, 432, 473, 554
FspBI	CTAG	2 cut(s)	387, 773
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	4 cut(s)	269, 432, 473, 554
GsaI	CCCAGC	1 cut(s)	438
HaeIII	GGCC	3 cut(s)	439, 665, 849
HapII	CCGG	4 cut(s)	16, 102, 113, 227
HgaI	GACGC	2 cut(s)	533, 644
HhaI	GCGC	1 cut(s)	65
Hin1I	GRCGYC	1 cut(s)	89
Hin1II	CATG	5 cut(s)	234, 311, 643, 928, 940
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HincII	GTYRAC	1 cut(s)	531
HindII	GTYRAC	1 cut(s)	531
HinfI	GANTC	4 cut(s)	151, 423, 449, 728
HpaII	CCGG	4 cut(s)	16, 102, 113, 227
HphI	GGTGA	2 cut(s)	635, 910
Hpy166II	GTNNAC	5 cut(s)	93, 206, 221, 531, 690
Hpy188III	TCNNGA	3 cut(s)	397, 569, 612
Hpy8I	GTNNAC	5 cut(s)	93, 206, 221, 531, 690
Hpy99I	CGWCG	3 cut(s)	10, 73, 91
HpyAV	CCTTC	4 cut(s)	336, 450, 503, 751
HpyCH4III	ACNGT	6 cut(s)	58, 214, 341, 528, 838, 913
HpyCH4IV	ACGT	1 cut(s)	89
HpyCH4V	TGCA	8 cut(s)	145, 206, 268, 275, 311, 431, 472, 862
HpyF10VI	GCNNNNNNNGC	2 cut(s)	550, 692
HpyF3I	CTNAG	7 cut(s)	170, 177, 291, 405, 548, 747, 870
HpySE526I	ACGT	1 cut(s)	89
Hsp92I	GRCGYC	1 cut(s)	89
Hsp92II	CATG	5 cut(s)	234, 311, 643, 928, 940
HspAI	GCGC	1 cut(s)	63
Ksp22I	TGATCA	1 cut(s)	393
Kzo9I	GATC	7 cut(s)	181, 238, 349, 393, 476, 608, 711
LmnI	GCTCC	3 cut(s)	70, 104, 169
Lsp1109I	GCAGC	4 cut(s)	280, 443, 484, 565
LweI	GCATC	2 cut(s)	34, 154
MaeI	CTAG	2 cut(s)	387, 773
MaeII	ACGT	1 cut(s)	89
MaeIII	GTNAC	1 cut(s)	623
MalI	GATC	7 cut(s)	183, 240, 351, 395, 478, 610, 713
MbiI	CCGCTC	1 cut(s)	169
MboI	GATC	7 cut(s)	181, 238, 349, 393, 476, 608, 711
MboII	GAAGA	5 cut(s)	64, 260, 359, 421, 458
MfeI	CAATTG	1 cut(s)	857
MflI	RGATCY	4 cut(s)	181, 238, 608, 711
MhlI	GDGCHC	2 cut(s)	77, 208
MlsI	TGGCCA	1 cut(s)	665
MluCI	AATT	3 cut(s)	122, 190, 857
MluNI	TGGCCA	1 cut(s)	665
MlyI	GAGTC	1 cut(s)	417
MmeI	TCCRAC	2 cut(s)	92, 739
MnlI	CCTC	9 cut(s)	3, 172, 358, 512, 556, 835, 860, 956, 965
Mox20I	TGGCCA	1 cut(s)	665
MscI	TGGCCA	1 cut(s)	665
MseI	TTAA	2 cut(s)	320, 648
MslI	CAYNNNNRTG	1 cut(s)	229
Msp20I	TGGCCA	1 cut(s)	665
MspA1I	CMGCKG	1 cut(s)	434
MspI	CCGG	4 cut(s)	16, 102, 113, 227
MspR9I	CCNGG	1 cut(s)	785
MunI	CAATTG	1 cut(s)	857
MvaI	CCWGG	1 cut(s)	785
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	2 cut(s)	550, 692
NdeII	GATC	7 cut(s)	181, 238, 349, 393, 476, 608, 711
NlaIII	CATG	5 cut(s)	234, 311, 643, 928, 940
NlaIV	GGNNCC	2 cut(s)	14, 183
NmuCI	GTSAC	1 cut(s)	623
PcsI	WCGNNNNNNNCGW	1 cut(s)	83
PfeI	GAWTC	3 cut(s)	151, 449, 728
PkrI	GCNGC	4 cut(s)	270, 433, 474, 555
PleI	GAGTC	1 cut(s)	417
PpsI	GAGTC	1 cut(s)	417
Psp124BI	GAGCTC	1 cut(s)	77
Psp6I	CCWGG	1 cut(s)	783
PspFI	CCCAGC	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	783
PspN4I	GGNNCC	2 cut(s)	14, 183
PspPI	GGNCC	4 cut(s)	18, 110, 437, 943
PstI	CTGCAG	1 cut(s)	433
PsuI	RGATCY	4 cut(s)	181, 238, 608, 711
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	5 cut(s)	38, 175, 771, 835, 915
RsaNI	GTAC	5 cut(s)	37, 174, 770, 834, 914
RseI	CAYNNNNRTG	1 cut(s)	229
SacI	GAGCTC	1 cut(s)	77
SaqAI	TTAA	2 cut(s)	320, 648
SatI	GCNGC	4 cut(s)	269, 432, 473, 554
Sau3AI	GATC	7 cut(s)	181, 238, 349, 393, 476, 608, 711
Sau96I	GGNCC	4 cut(s)	18, 110, 437, 943
ScaI	AGTACT	3 cut(s)	175, 771, 915
SchI	GAGTC	1 cut(s)	417
ScrFI	CCNGG	1 cut(s)	785
SduI	GDGCHC	2 cut(s)	77, 208
SfaNI	GCATC	2 cut(s)	34, 154
SfcI	CTRYAG	3 cut(s)	416, 429, 909
SinI	GGWCC	3 cut(s)	18, 110, 943
SmiMI	CAYNNNNRTG	1 cut(s)	229
SmlI	CTYRAG	2 cut(s)	851, 956
SmoI	CTYRAG	2 cut(s)	851, 956
SpeI	ACTAGT	2 cut(s)	386, 772
Sse9I	AATT	3 cut(s)	122, 190, 857
SsiI	CCGC	4 cut(s)	61, 81, 105, 167
SspMI	CTAG	2 cut(s)	387, 773
SstI	GAGCTC	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	783
TaaI	ACNGT	6 cut(s)	58, 214, 341, 528, 838, 913
TaiI	ACGT	1 cut(s)	92
TaqI	TCGA	1 cut(s)	86
TaqII	GACCGA	1 cut(s)	144
TasI	AATT	3 cut(s)	122, 190, 857
TatI	WGTACW	5 cut(s)	36, 173, 769, 833, 913
TfiI	GAWTC	3 cut(s)	151, 449, 728
Tru1I	TTAA	2 cut(s)	320, 648
Tru9I	TTAA	2 cut(s)	320, 648
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	1 cut(s)	623
TseI	GCWGC	4 cut(s)	268, 431, 472, 553
Tsp45I	GTSAC	1 cut(s)	623
TspDTI	ATGAA	5 cut(s)	318, 605, 615, 753, 770
TspRI	CASTG	1 cut(s)	493
VneI	GTGCAC	1 cut(s)	204
VpaK11BI	GGWCC	3 cut(s)	18, 110, 943
XmiI	GTMKAC	1 cut(s)	220
XspI	CTAG	2 cut(s)	387, 773
ZraI	GACGTC	1 cut(s)	90
ZrmI	AGTACT	3 cut(s)	175, 771, 915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.