Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0010026

Physical Location & Seq

Genomic Coordinates Forward (+)

6150106 .. 6153618

Gene Structure 3513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG079100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGCGACGAGGAATCGGACTTTGCTTTACCGAAAGTACAGGGATGCGTTGAAGACCGTCCGCTCTCCGGTCGGCTCCTCCGCCTCGGCGTCCACCAGCTCCGGCGCCGGAGGTCCCGTCATCGAATTGTCTTCGCTTATGCATAAGAATCGATCCTATGCTCCGCTCAGTACTGAAGATCCCGGTAATTCAAGTAAGGGTGCAATTACTGTTGGTCTACCGCCAGCATGGGTGGATGTATCTGAAGAAATAGCGGTAAATGTGCAGCGGGCACGGGTAAAAATGTCTGAGCTGTCCAAGGCTCATGCAAAGGCTTTAATGCCATCTTTTGGAGATGGTAAAGAAGATCAACGCTTGATTGAGAGTCTTACACAAGAGATTACTGGATTAATAACGAAATCTCAGAAGAGACTACAAAGACTTGCCGCAGCTGGGCCTTCAGAAGATTCAAATGTTAGAAAGAACGTGCAGGTATCTCTTGCTACGGACCTTCAGAGCCTCTCTAATGAGCTTCGTAAGAAACAATCAAATTATTTGAAACGCCTCAAACAGCAAAAAGAGGGTCAAGATGGGGACGACCTTGAGATGAACCTAAATGGAAGTAGATCAAGAATGGATGGTGATGATTTGGATGAAATAATGTTTCATGAGCGTGAGACGGCCCAGATTAAGAAACATGAAGCATTCACAGCAGAAAGGGAAAGAGAGATTCATCAGGTTGTGGAATCTGTGAATGAGCTTGCCCAGATTATGAAGGATCTGTCAGTTCTAGTGATAGACCAGGTTAACACCAATCTCTTGTCAGCACTTGAAATTCAAGGAATATTCAGTCTCTTACTAAATATATTTCTTCAAACAGGGAACTATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0002790 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006906 GO:0006996 GO:0007030 GO:0007034 GO:0008104 GO:0008150 GO:0009306 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032588 GO:0032940 GO:0032991 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

290

Amino Acids

32.1

Weight (kDa)

6.99

Isoelectric Point (pI)

54.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05710 AT3G05710 AT5G26980 AT5G26980 AT5G26980
fragaria_vesca	FvH4_6g07100 FvH4_6g07100 FvH4_6g07100
malus_domestica	MD04G1196100.v1.1 MD12G1209100.v1.1
prunus_persica	Prupe.6G316200_v2.0.a1
pyrus_communis	pycom12g19630
rosa_chinensis	RchiOBHm_Chr3g0456681
rosa_laevigata	RLG00000025284
rosa_roxburghii	Rroxscaffold_11G00450400 Rroxscaffold_6G00422540
rosa_rugosa	Rorug03G0015000
rosa_samantha	Rh3AG075500 Rh3BG077400 Rh3DG079100
rosa_wichuraiana	Rw3G006470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	460
AccB1I	GGYRCC	1 cut(s)	104
AccB7I	CCANNNNNTGG	1 cut(s)	329
AccBSI	CCGCTC	2 cut(s)	63, 166
AccI	GTMKAC	1 cut(s)	217
AciI	CCGC	7 cut(s)	61, 81, 164, 221, 254, 268, 426
AclWI	GGATC	3 cut(s)	147, 173, 765
AcsI	RAATTY	1 cut(s)	813
AcuI	CTGAAG	4 cut(s)	195, 264, 423, 476
AcyI	GRCGYC	2 cut(s)	89, 105
AfaI	GTAC	2 cut(s)	38, 172
AfiI	CCNNNNNNNGG	3 cut(s)	67, 329, 432
AgsI	TTSAA	7 cut(s)	52, 192, 450, 538, 812, 818, 854
AjnI	CCWGG	1 cut(s)	780
AluBI	AGCT	5 cut(s)	99, 292, 431, 511, 739
AluI	AGCT	5 cut(s)	99, 292, 431, 511, 739
Alw26I	GTCTC	3 cut(s)	403, 650, 836
AlwI	GGATC	3 cut(s)	147, 173, 765
AoxI	GGCC	2 cut(s)	434, 660
ApeKI	GCWGC	2 cut(s)	265, 428
ApoI	RAATTY	1 cut(s)	813
ArsI	GACNNNNNNTTYG	2 cut(s)	547, 579
AseI	ATTAAT	1 cut(s)	389
AspLEI	GCGC	1 cut(s)	107
AspS9I	GGNCC	4 cut(s)	113, 434, 487, 661
AsuC2I	CCSGG	1 cut(s)	183
AsuHPI	GGTGA	1 cut(s)	632
AvaII	GGWCC	2 cut(s)	113, 487
BaeGI	GKGCMC	1 cut(s)	274
BanI	GGYRCC	1 cut(s)	104
BbsI	GAAGAC	2 cut(s)	59, 123
BbvI	GCAGC	2 cut(s)	277, 440
BccI	CCATC	4 cut(s)	329, 331, 563, 611
BceAI	ACGGC	1 cut(s)	675
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	1 cut(s)	782
BcnI	CCSGG	1 cut(s)	183
BcoDI	GTCTC	3 cut(s)	403, 650, 836
BfaI	CTAG	1 cut(s)	770
BfoI	RGCGCY	1 cut(s)	108
BfuAI	ACCTGC	1 cut(s)	460
BisI	GCNGC	3 cut(s)	266, 426, 429
BlsI	GCNGC	3 cut(s)	267, 427, 430
BmcAI	AGTACT	1 cut(s)	172
Bme1390I	CCNGG	2 cut(s)	183, 782
Bme18I	GGWCC	2 cut(s)	113, 487
BmgT120I	GGNCC	4 cut(s)	113, 434, 487, 661
BmiI	GGNNCC	3 cut(s)	76, 106, 115
BmrFI	CCNGG	2 cut(s)	183, 782
BmsI	GCATC	1 cut(s)	34
BpiI	GAAGAC	2 cut(s)	59, 123
BpuEI	CTTGAG	1 cut(s)	602
BpuMI	CCSGG	1 cut(s)	183
Bsa29I	ATCGAT	1 cut(s)	151
BsaHI	GRCGYC	2 cut(s)	89, 105
BsaJI	CCNNGG	2 cut(s)	84, 297
BsaWI	WCCGGW	1 cut(s)	67
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 329, 432
Bse1I	ACTGG	1 cut(s)	388
BseBI	CCWGG	1 cut(s)	782
BseCI	ATCGAT	1 cut(s)	151
BseDI	CCNNGG	2 cut(s)	84, 297
BseGI	GGATG	4 cut(s)	49, 241, 622, 637
BseLI	CCNNNNNNNGG	3 cut(s)	67, 329, 432
BseMII	CTCAG	3 cut(s)	181, 279, 416
BseNI	ACTGG	1 cut(s)	388
BseRI	GAGGAG	1 cut(s)	67
BseSI	GKGCMC	1 cut(s)	274
BseXI	GCAGC	2 cut(s)	277, 440
BseYI	CCCAGC	1 cut(s)	431
BsgI	GTGCAG	2 cut(s)	284, 488
Bsh1285I	CGRYCG	1 cut(s)	72
BshFI	GGCC	2 cut(s)	436, 662
BshNI	GGYRCC	1 cut(s)	104
BshVI	ATCGAT	1 cut(s)	151
BsiEI	CGRYCG	1 cut(s)	72
BsiSI	CCGG	4 cut(s)	68, 102, 108, 183
BslFI	GGGAC	2 cut(s)	99, 587
BslI	CCNNNNNNNGG	3 cut(s)	67, 329, 432
BsmAI	GTCTC	3 cut(s)	403, 650, 836
BsmBI	CGTCTC	1 cut(s)	650
BsmFI	GGGAC	2 cut(s)	99, 587
BsmI	GAATGC	1 cut(s)	683
BsnI	GGCC	2 cut(s)	436, 662
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp143I	GATC	5 cut(s)	152, 178, 346, 605, 757
BspACI	CCGC	7 cut(s)	61, 81, 164, 221, 254, 268, 426
BspANI	GGCC	2 cut(s)	436, 662
BspCNI	CTCAG	3 cut(s)	180, 280, 415
BspDI	ATCGAT	1 cut(s)	151
BspHI	TCATGA	1 cut(s)	646
BspLI	GGNNCC	3 cut(s)	76, 106, 115
BspMI	ACCTGC	1 cut(s)	460
BspPI	GGATC	3 cut(s)	147, 173, 765
BspT107I	GGYRCC	1 cut(s)	104
BsrBI	CCGCTC	2 cut(s)	63, 166
BsrI	ACTGG	1 cut(s)	388
BssECI	CCNNGG	2 cut(s)	84, 297
BssMI	GATC	5 cut(s)	152, 178, 346, 605, 757
BssNI	GRCGYC	2 cut(s)	89, 105
BssT1I	CCWWGG	1 cut(s)	297
Bst2UI	CCWGG	1 cut(s)	782
Bst4CI	ACNGT	2 cut(s)	58, 211
Bst6I	CTCTTC	1 cut(s)	401
BstACI	GRCGYC	2 cut(s)	89, 105
BstC8I	GCNNGC	3 cut(s)	225, 270, 741
BstDEI	CTNAG	3 cut(s)	167, 288, 402
BstF5I	GGATG	4 cut(s)	49, 241, 622, 637
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	5 cut(s)	155, 181, 349, 608, 760
BstMAI	GTCTC	3 cut(s)	403, 650, 836
BstMBI	GATC	5 cut(s)	152, 178, 346, 605, 757
BstMCI	CGRYCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	1 cut(s)	689
BstNI	CCWGG	1 cut(s)	782
BstSCI	CCNGG	2 cut(s)	181, 780
BstSLI	GKGCMC	1 cut(s)	274
BstV1I	GCAGC	2 cut(s)	277, 440
BstV2I	GAAGAC	2 cut(s)	59, 123
BstX2I	RGATCY	2 cut(s)	178, 757
BstYI	RGATCY	2 cut(s)	178, 757
Bsu15I	ATCGAT	1 cut(s)	151
BsuRI	GGCC	2 cut(s)	436, 662
BsuTUI	ATCGAT	1 cut(s)	151
BtsCI	GGATG	4 cut(s)	49, 241, 622, 637
BveI	ACCTGC	1 cut(s)	460
Cac8I	GCNNGC	3 cut(s)	225, 270, 741
CciI	TCATGA	1 cut(s)	646
CfoI	GCGC	1 cut(s)	107
Cfr13I	GGNCC	4 cut(s)	113, 434, 487, 661
ClaI	ATCGAT	1 cut(s)	151
CseI	GACGC	1 cut(s)	78
CsiI	ACCWGGT	1 cut(s)	780
Csp6I	GTAC	2 cut(s)	37, 171
CviAII	CATG	4 cut(s)	228, 305, 647, 677
CviQI	GTAC	2 cut(s)	37, 171
DdeI	CTNAG	3 cut(s)	167, 288, 402
DinI	GGCGCC	1 cut(s)	106
DpnI	GATC	5 cut(s)	154, 180, 348, 607, 759
DpnII	GATC	5 cut(s)	152, 178, 346, 605, 757
Eam1104I	CTCTTC	1 cut(s)	401
EarI	CTCTTC	1 cut(s)	401
EciI	GGCGGA	1 cut(s)	70
Eco130I	CCWWGG	1 cut(s)	297
Eco47I	GGWCC	2 cut(s)	113, 487
Eco57I	CTGAAG	4 cut(s)	195, 264, 423, 476
EcoO109I	RGGNCCY	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	780
EcoT14I	CCWWGG	1 cut(s)	297
EcoT22I	ATGCAT	1 cut(s)	144
EgeI	GGCGCC	1 cut(s)	106
EheI	GGCGCC	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	297
Esp3I	CGTCTC	1 cut(s)	650
FaeI	CATG	4 cut(s)	231, 308, 650, 680
FaiI	YATR	9 cut(s)	140, 144, 159, 229, 306, 648, 678, 752, 845
FaqI	GGGAC	2 cut(s)	99, 587
FatI	CATG	4 cut(s)	227, 304, 646, 676
FauI	CCCGC	1 cut(s)	261
FblI	GTMKAC	1 cut(s)	217
Fnu4HI	GCNGC	3 cut(s)	266, 426, 429
FokI	GGATG	4 cut(s)	56, 248, 629, 644
Fsp4HI	GCNGC	3 cut(s)	266, 426, 429
FspBI	CTAG	1 cut(s)	770
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	3 cut(s)	266, 426, 429
GsaI	CCCAGC	1 cut(s)	435
HaeII	RGCGCY	1 cut(s)	108
HaeIII	GGCC	2 cut(s)	436, 662
HapII	CCGG	4 cut(s)	68, 102, 108, 183
HgaI	GACGC	1 cut(s)	78
HhaI	GCGC	1 cut(s)	107
Hin1I	GRCGYC	2 cut(s)	89, 105
Hin1II	CATG	4 cut(s)	231, 308, 650, 680
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HincII	GTYRAC	1 cut(s)	787
HindII	GTYRAC	1 cut(s)	787
HinfI	GANTC	6 cut(s)	13, 148, 364, 446, 709, 725
HpaI	GTTAAC	1 cut(s)	787
HpaII	CCGG	4 cut(s)	68, 102, 108, 183
HphI	GGTGA	1 cut(s)	632
Hpy166II	GTNNAC	3 cut(s)	93, 218, 787
Hpy188I	TCNGA	6 cut(s)	18, 244, 289, 405, 442, 495
Hpy188III	TCNNGA	3 cut(s)	566, 609, 647
Hpy8I	GTNNAC	3 cut(s)	93, 218, 787
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	447, 500, 748
HpyCH4III	ACNGT	2 cut(s)	58, 211
HpyCH4IV	ACGT	1 cut(s)	465
HpyCH4V	TGCA	5 cut(s)	142, 203, 265, 308, 469
HpyF10VI	GCNNNNNNNGC	1 cut(s)	689
HpyF3I	CTNAG	3 cut(s)	167, 288, 402
HpySE526I	ACGT	1 cut(s)	465
Hsp92I	GRCGYC	2 cut(s)	89, 105
Hsp92II	CATG	4 cut(s)	231, 308, 650, 680
HspAI	GCGC	1 cut(s)	105
KasI	GGCGCC	1 cut(s)	104
KspAI	GTTAAC	1 cut(s)	787
Kzo9I	GATC	5 cut(s)	152, 178, 346, 605, 757
LmnI	GCTCC	3 cut(s)	80, 104, 166
Lsp1109I	GCAGC	2 cut(s)	277, 440
LweI	GCATC	1 cut(s)	34
MabI	ACCWGGT	1 cut(s)	780
MaeI	CTAG	1 cut(s)	770
MaeII	ACGT	1 cut(s)	465
MalI	GATC	5 cut(s)	154, 180, 348, 607, 759
MbiI	CCGCTC	2 cut(s)	63, 166
MboI	GATC	5 cut(s)	152, 178, 346, 605, 757
MboII	GAAGA	8 cut(s)	64, 123, 188, 257, 356, 418, 455, 842
MflI	RGATCY	2 cut(s)	178, 757
MhlI	GDGCHC	1 cut(s)	274
MluCI	AATT	5 cut(s)	125, 187, 204, 529, 813
Mly113I	GGCGCC	1 cut(s)	105
MlyI	GAGTC	1 cut(s)	373
MnlI	CCTC	7 cut(s)	3, 88, 94, 104, 509, 553, 554
Mph1103I	ATGCAT	1 cut(s)	144
MseI	TTAA	4 cut(s)	317, 389, 669, 786
MslI	CAYNNNNRTG	1 cut(s)	651
MspA1I	CMGCKG	2 cut(s)	268, 431
MspI	CCGG	4 cut(s)	68, 102, 108, 183
MspR9I	CCNGG	2 cut(s)	183, 782
Mva1269I	GAATGC	1 cut(s)	683
MvaI	CCWGG	1 cut(s)	782
MwoI	GCNNNNNNNGC	1 cut(s)	689
NarI	GGCGCC	1 cut(s)	105
NciI	CCSGG	1 cut(s)	183
NdeII	GATC	5 cut(s)	152, 178, 346, 605, 757
NlaIII	CATG	4 cut(s)	231, 308, 650, 680
NlaIV	GGNNCC	3 cut(s)	76, 106, 115
NmeAIII	GCCGAG	1 cut(s)	65
NsiI	ATGCAT	1 cut(s)	144
PagI	TCATGA	1 cut(s)	646
PctI	GAATGC	1 cut(s)	683
PfeI	GAWTC	5 cut(s)	13, 148, 446, 709, 725
PflMI	CCANNNNNTGG	1 cut(s)	329
PkrI	GCNGC	3 cut(s)	267, 427, 430
PleI	GAGTC	1 cut(s)	372
PluTI	GGCGCC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	372
PpuMI	RGGWCCY	1 cut(s)	113
PshBI	ATTAAT	1 cut(s)	389
Psp5II	RGGWCCY	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	780
PspFI	CCCAGC	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	780
PspN4I	GGNNCC	3 cut(s)	76, 106, 115
PspPI	GGNCC	4 cut(s)	113, 434, 487, 661
PspPPI	RGGWCCY	1 cut(s)	113
PsuI	RGATCY	2 cut(s)	178, 757
PvuII	CAGCTG	1 cut(s)	431
RsaI	GTAC	2 cut(s)	38, 172
RsaNI	GTAC	2 cut(s)	37, 171
RseI	CAYNNNNRTG	1 cut(s)	651
SaqAI	TTAA	4 cut(s)	317, 389, 669, 786
SatI	GCNGC	3 cut(s)	266, 426, 429
Sau3AI	GATC	5 cut(s)	152, 178, 346, 605, 757
Sau96I	GGNCC	4 cut(s)	113, 434, 487, 661
ScaI	AGTACT	1 cut(s)	172
SchI	GAGTC	1 cut(s)	373
ScrFI	CCNGG	2 cut(s)	183, 782
SduI	GDGCHC	1 cut(s)	274
SexAI	ACCWGGT	1 cut(s)	780
SfaNI	GCATC	1 cut(s)	34
SfoI	GGCGCC	1 cut(s)	106
SinI	GGWCC	2 cut(s)	113, 487
SmiMI	CAYNNNNRTG	1 cut(s)	651
SmlI	CTYRAG	1 cut(s)	581
SmoI	CTYRAG	1 cut(s)	581
Sse9I	AATT	5 cut(s)	125, 187, 204, 529, 813
SsiI	CCGC	7 cut(s)	61, 81, 164, 221, 254, 268, 426
SspDI	GGCGCC	1 cut(s)	104
SspI	AATATT	1 cut(s)	825
SspMI	CTAG	1 cut(s)	770
StyD4I	CCNGG	2 cut(s)	181, 780
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	2 cut(s)	58, 211
TaiI	ACGT	1 cut(s)	468
TaqI	TCGA	2 cut(s)	123, 151
TasI	AATT	5 cut(s)	125, 187, 204, 529, 813
TatI	WGTACW	2 cut(s)	36, 170
TauI	GCSGC	1 cut(s)	428
TfiI	GAWTC	5 cut(s)	13, 148, 446, 709, 725
Tru1I	TTAA	4 cut(s)	317, 389, 669, 786
Tru9I	TTAA	4 cut(s)	317, 389, 669, 786
TseI	GCWGC	2 cut(s)	265, 428
TspDTI	ATGAA	6 cut(s)	602, 635, 648, 693, 701, 767
TspGWI	ACGGA	1 cut(s)	500
Van91I	CCANNNNNTGG	1 cut(s)	329
VpaK11BI	GGWCC	2 cut(s)	113, 487
VspI	ATTAAT	1 cut(s)	389
XapI	RAATTY	1 cut(s)	813
XmiI	GTMKAC	1 cut(s)	217
XspI	CTAG	1 cut(s)	770
ZrmI	AGTACT	1 cut(s)	172
Zsp2I	ATGCAT	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.