Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000011

Orthogroup ID

OG0010026

Physical Location & Seq

Genomic Coordinates Reverse (-)

16832 .. 19960

Gene Structure 3129 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_11G00450400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGCAACGAGGAATCGGACTCTGCTTTACAGAAAGTACCGGGATGCGTTGAGGACCGTCCGCTCTCCGGTCAGCTCCTCCGCGTCGGCCTCCACCAGCTCCGGCGCCGGAGGTCCCGTCATCGAATTGTCATCGCTTATGCATAAGAATCGATCCTATGCTCCGCTCAGTACTGAAGATCCCGGTAATTCAAGTAAGGGTGCAATTACTGTTGGTCTACCGCCAGCATGGGTGGATGTATCGGAAGAAATAGCAGTAAATGTGCAGCGGGCACGGGTAAAAATGTCTGAACTGTCCAAGGCTCATGCAAAGGCTTTAATGCCATCTTTTGGAGATGGTAAAGAAGATCAACGCTTGATTGAGAGTCTTACACAAGAGATTACTGGATTAATAACGAAATCTCAGAAGAGACTACAAAGACTTGCCGCAGCTGGGCCTTCAGAAGATTCAAATGTTAGAAAGAACGTGCAGGTATCTCTTGCTACGGACCTTCAGAGCCTCTCTAATGAGCTTCGTAAGAAACAATCAAATTATTTGAAACGCCTCAAACAGCAAAAAGAGGGTCAAGATGGGGACGACCTTGAGATGAACCTAAATGGAAGTAGATCAAGAATGGATGGTGATGATTTGGATGAAATAGTTGTGGAATCTGTGAATGAGCTTGCCCAGATTATGAAGGATCTGTCAGTTCTAGTGATAGACCAGGGAACTATTGTTGATAGGATAGACTACAACATTCAGAATGTTGCAAGTACAGTTGAGGATGGCCTCAAGCAATTGCAAAAGGTCACCACCTTCTCCATCTTTTGTCGATCATTGTACTTCAGCTGCCGAGAGAACACAGAAACAAGGTGGAATGGTGATGTGTGCTACAGTACTCGTAATCATGTGCGCTGTCATGTTGGTTCTCCTAGTCCTCAAGGAGATACTTTTTTGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0002790 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006906 GO:0006996 GO:0007030 GO:0007034 GO:0008104 GO:0008150 GO:0009306 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032588 GO:0032940 GO:0032991 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

313

Amino Acids

34.6

Weight (kDa)

8.26

Isoelectric Point (pI)

63.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNARE	PF05739	237 - 263	1.7e-06	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05710 AT3G05710 AT5G26980 AT5G26980 AT5G26980
fragaria_vesca	FvH4_6g07100 FvH4_6g07100 FvH4_6g07100
malus_domestica	MD04G1196100.v1.1 MD12G1209100.v1.1
prunus_persica	Prupe.6G316200_v2.0.a1
pyrus_communis	pycom12g19630
rosa_chinensis	RchiOBHm_Chr3g0456681
rosa_laevigata	RLG00000025284
rosa_roxburghii	Rroxscaffold_11G00450400 Rroxscaffold_6G00422540
rosa_rugosa	Rorug03G0015000
rosa_samantha	Rh3AG075500 Rh3BG077400 Rh3DG079100
rosa_wichuraiana	Rw3G006470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	460
AccB1I	GGYRCC	1 cut(s)	104
AccB7I	CCANNNNNTGG	1 cut(s)	329
AccBSI	CCGCTC	2 cut(s)	63, 166
AccI	GTMKAC	1 cut(s)	217
AccII	CGCG	1 cut(s)	83
AciI	CCGC	6 cut(s)	61, 81, 164, 221, 268, 426
AclWI	GGATC	3 cut(s)	147, 173, 687
AcuI	CTGAAG	4 cut(s)	195, 423, 476, 808
AcyI	GRCGYC	1 cut(s)	105
AfaI	GTAC	5 cut(s)	38, 172, 754, 821, 877
AfiI	CCNNNNNNNGG	3 cut(s)	67, 329, 432
AgsI	TTSAA	3 cut(s)	192, 450, 538
AjnI	CCWGG	1 cut(s)	702
AluBI	AGCT	6 cut(s)	75, 99, 431, 511, 661, 828
AluI	AGCT	6 cut(s)	75, 99, 431, 511, 661, 828
Alw26I	GTCTC	1 cut(s)	403
AlwI	GGATC	3 cut(s)	147, 173, 687
AoxI	GGCC	3 cut(s)	87, 434, 766
ApeKI	GCWGC	3 cut(s)	265, 428, 828
ArsI	GACNNNNNNTTYG	2 cut(s)	547, 579
AseI	ATTAAT	1 cut(s)	389
AspLEI	GCGC	2 cut(s)	107, 894
AspS9I	GGNCC	4 cut(s)	54, 113, 434, 487
AsuC2I	CCSGG	2 cut(s)	41, 183
AsuHPI	GGTGA	3 cut(s)	632, 781, 872
AvaII	GGWCC	3 cut(s)	54, 113, 487
BaeGI	GKGCMC	1 cut(s)	274
BanI	GGYRCC	1 cut(s)	104
BbvI	GCAGC	3 cut(s)	277, 440, 815
BccI	CCATC	6 cut(s)	329, 331, 563, 611, 758, 809
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	1 cut(s)	704
BcnI	CCSGG	2 cut(s)	41, 183
BcoDI	GTCTC	1 cut(s)	403
BfaI	CTAG	2 cut(s)	692, 912
BfmI	CTRYAG	1 cut(s)	871
BfoI	RGCGCY	1 cut(s)	108
BfuAI	ACCTGC	1 cut(s)	460
BisI	GCNGC	4 cut(s)	266, 426, 429, 829
BlsI	GCNGC	4 cut(s)	267, 427, 430, 830
BmcAI	AGTACT	2 cut(s)	172, 877
Bme1390I	CCNGG	3 cut(s)	41, 183, 704
Bme18I	GGWCC	3 cut(s)	54, 113, 487
BmgT120I	GGNCC	4 cut(s)	54, 113, 434, 487
BmiI	GGNNCC	2 cut(s)	106, 115
BmrFI	CCNGG	3 cut(s)	41, 183, 704
BmsI	GCATC	1 cut(s)	34
BpuEI	CTTGAG	3 cut(s)	602, 755, 903
BpuMI	CCSGG	2 cut(s)	41, 183
Bsa29I	ATCGAT	1 cut(s)	151
BsaHI	GRCGYC	1 cut(s)	105
BsaJI	CCNNGG	2 cut(s)	297, 703
BsaWI	WCCGGW	1 cut(s)	67
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 329, 432
Bse1I	ACTGG	1 cut(s)	388
BseBI	CCWGG	1 cut(s)	704
BseCI	ATCGAT	1 cut(s)	151
BseDI	CCNNGG	2 cut(s)	297, 703
BseGI	GGATG	5 cut(s)	49, 241, 622, 637, 769
BseLI	CCNNNNNNNGG	3 cut(s)	67, 329, 432
BseMII	CTCAG	2 cut(s)	181, 416
BseNI	ACTGG	1 cut(s)	388
BseRI	GAGGAG	1 cut(s)	67
BseSI	GKGCMC	1 cut(s)	274
BseXI	GCAGC	3 cut(s)	277, 440, 815
BseYI	CCCAGC	1 cut(s)	431
BsgI	GTGCAG	2 cut(s)	284, 488
Bsh1236I	CGCG	1 cut(s)	83
BshFI	GGCC	3 cut(s)	89, 436, 768
BshNI	GGYRCC	1 cut(s)	104
BshVI	ATCGAT	1 cut(s)	151
BsiSI	CCGG	5 cut(s)	40, 68, 102, 108, 183
BslFI	GGGAC	2 cut(s)	99, 587
BslI	CCNNNNNNNGG	3 cut(s)	67, 329, 432
BsmAI	GTCTC	1 cut(s)	403
BsmFI	GGGAC	2 cut(s)	99, 587
BsnI	GGCC	3 cut(s)	89, 436, 768
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp143I	GATC	7 cut(s)	152, 178, 346, 605, 679, 812, 936
BspACI	CCGC	6 cut(s)	61, 81, 164, 221, 268, 426
BspANI	GGCC	3 cut(s)	89, 436, 768
BspCNI	CTCAG	2 cut(s)	180, 415
BspDI	ATCGAT	1 cut(s)	151
BspFNI	CGCG	1 cut(s)	83
BspLI	GGNNCC	2 cut(s)	106, 115
BspMI	ACCTGC	1 cut(s)	460
BspPI	GGATC	3 cut(s)	147, 173, 687
BspT107I	GGYRCC	1 cut(s)	104
BsrBI	CCGCTC	2 cut(s)	63, 166
BsrI	ACTGG	1 cut(s)	388
BssECI	CCNNGG	2 cut(s)	297, 703
BssMI	GATC	7 cut(s)	152, 178, 346, 605, 679, 812, 936
BssNI	GRCGYC	1 cut(s)	105
BssT1I	CCWWGG	1 cut(s)	297
Bst2UI	CCWGG	1 cut(s)	704
Bst4CI	ACNGT	5 cut(s)	58, 211, 294, 757, 875
Bst6I	CTCTTC	1 cut(s)	401
BstACI	GRCGYC	1 cut(s)	105
BstC8I	GCNNGC	3 cut(s)	225, 270, 663
BstDEI	CTNAG	2 cut(s)	167, 402
BstEII	GGTNACC	1 cut(s)	787
BstF5I	GGATG	5 cut(s)	49, 241, 622, 637, 769
BstFNI	CGCG	1 cut(s)	83
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	2 cut(s)	107, 894
BstKTI	GATC	7 cut(s)	155, 181, 349, 608, 682, 815, 939
BstMAI	GTCTC	1 cut(s)	403
BstMBI	GATC	7 cut(s)	152, 178, 346, 605, 679, 812, 936
BstNI	CCWGG	1 cut(s)	704
BstPI	GGTNACC	1 cut(s)	787
BstSCI	CCNGG	3 cut(s)	39, 181, 702
BstSFI	CTRYAG	1 cut(s)	871
BstSLI	GKGCMC	1 cut(s)	274
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	3 cut(s)	277, 440, 815
BstX2I	RGATCY	2 cut(s)	178, 679
BstYI	RGATCY	2 cut(s)	178, 679
Bsu15I	ATCGAT	1 cut(s)	151
BsuRI	GGCC	3 cut(s)	89, 436, 768
BsuTUI	ATCGAT	1 cut(s)	151
BtgZI	GCGATG	1 cut(s)	117
BtsCI	GGATG	5 cut(s)	49, 241, 622, 637, 769
BveI	ACCTGC	1 cut(s)	460
Cac8I	GCNNGC	3 cut(s)	225, 270, 663
CfoI	GCGC	2 cut(s)	107, 894
Cfr13I	GGNCC	4 cut(s)	54, 113, 434, 487
ClaI	ATCGAT	1 cut(s)	151
CseI	GACGC	1 cut(s)	72
Csp6I	GTAC	5 cut(s)	37, 171, 753, 820, 876
CviAII	CATG	4 cut(s)	228, 305, 887, 899
CviQI	GTAC	5 cut(s)	37, 171, 753, 820, 876
DdeI	CTNAG	2 cut(s)	167, 402
DinI	GGCGCC	1 cut(s)	106
DpnI	GATC	7 cut(s)	154, 180, 348, 607, 681, 814, 938
DpnII	GATC	7 cut(s)	152, 178, 346, 605, 679, 812, 936
Eam1104I	CTCTTC	1 cut(s)	401
EarI	CTCTTC	1 cut(s)	401
Eco130I	CCWWGG	1 cut(s)	297
Eco47I	GGWCC	3 cut(s)	54, 113, 487
Eco57I	CTGAAG	4 cut(s)	195, 423, 476, 808
Eco91I	GGTNACC	1 cut(s)	787
EcoO109I	RGGNCCY	1 cut(s)	113
EcoO65I	GGTNACC	1 cut(s)	787
EcoRII	CCWGG	1 cut(s)	702
EcoT14I	CCWWGG	1 cut(s)	297
EcoT22I	ATGCAT	1 cut(s)	144
EgeI	GGCGCC	1 cut(s)	106
EheI	GGCGCC	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	4 cut(s)	231, 308, 890, 902
FaiI	YATR	8 cut(s)	140, 144, 159, 229, 306, 674, 888, 900
FaqI	GGGAC	2 cut(s)	99, 587
FatI	CATG	4 cut(s)	227, 304, 886, 898
FauI	CCCGC	1 cut(s)	261
FblI	GTMKAC	1 cut(s)	217
Fnu4HI	GCNGC	4 cut(s)	266, 426, 429, 829
FokI	GGATG	5 cut(s)	56, 248, 629, 644, 776
Fsp4HI	GCNGC	4 cut(s)	266, 426, 429, 829
FspBI	CTAG	2 cut(s)	692, 912
GlaI	GCGC	2 cut(s)	106, 893
GluI	GCNGC	4 cut(s)	266, 426, 429, 829
GsaI	CCCAGC	1 cut(s)	435
HaeII	RGCGCY	1 cut(s)	108
HaeIII	GGCC	3 cut(s)	89, 436, 768
HapII	CCGG	5 cut(s)	40, 68, 102, 108, 183
HgaI	GACGC	1 cut(s)	72
HhaI	GCGC	2 cut(s)	107, 894
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	4 cut(s)	231, 308, 890, 902
Hin6I	GCGC	2 cut(s)	105, 892
HinP1I	GCGC	2 cut(s)	105, 892
HinfI	GANTC	6 cut(s)	13, 19, 148, 364, 446, 647
HpaII	CCGG	5 cut(s)	40, 68, 102, 108, 183
HphI	GGTGA	3 cut(s)	632, 781, 872
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188I	TCNGA	8 cut(s)	18, 244, 289, 405, 442, 495, 741, 941
Hpy188III	TCNNGA	2 cut(s)	566, 609
Hpy8I	GTNNAC	1 cut(s)	218
Hpy99I	CGWCG	1 cut(s)	88
HpyAV	CCTTC	4 cut(s)	447, 500, 670, 805
HpyCH4III	ACNGT	5 cut(s)	58, 211, 294, 757, 875
HpyCH4IV	ACGT	1 cut(s)	465
HpyCH4V	TGCA	7 cut(s)	142, 203, 265, 308, 469, 749, 781
HpyF3I	CTNAG	2 cut(s)	167, 402
HpySE526I	ACGT	1 cut(s)	465
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	4 cut(s)	231, 308, 890, 902
HspAI	GCGC	2 cut(s)	105, 892
KasI	GGCGCC	1 cut(s)	104
Kzo9I	GATC	7 cut(s)	152, 178, 346, 605, 679, 812, 936
LmnI	GCTCC	3 cut(s)	80, 104, 166
Lsp1109I	GCAGC	3 cut(s)	277, 440, 815
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	2 cut(s)	692, 912
MaeII	ACGT	1 cut(s)	465
MaeIII	GTNAC	1 cut(s)	787
MalI	GATC	7 cut(s)	154, 180, 348, 607, 681, 814, 938
MbiI	CCGCTC	2 cut(s)	63, 166
MboI	GATC	7 cut(s)	152, 178, 346, 605, 679, 812, 936
MboII	GAAGA	5 cut(s)	188, 257, 356, 418, 455
MfeI	CAATTG	1 cut(s)	776
MflI	RGATCY	2 cut(s)	178, 679
MhlI	GDGCHC	1 cut(s)	274
MluCI	AATT	5 cut(s)	125, 187, 204, 529, 776
Mly113I	GGCGCC	1 cut(s)	105
MlyI	GAGTC	2 cut(s)	13, 373
Mph1103I	ATGCAT	1 cut(s)	144
MseI	TTAA	2 cut(s)	317, 389
MspA1I	CMGCKG	3 cut(s)	268, 431, 828
MspI	CCGG	5 cut(s)	40, 68, 102, 108, 183
MspR9I	CCNGG	3 cut(s)	41, 183, 704
MunI	CAATTG	1 cut(s)	776
MvaI	CCWGG	1 cut(s)	704
MvnI	CGCG	1 cut(s)	83
NarI	GGCGCC	1 cut(s)	105
NciI	CCSGG	2 cut(s)	41, 183
NdeII	GATC	7 cut(s)	152, 178, 346, 605, 679, 812, 936
NlaIII	CATG	4 cut(s)	231, 308, 890, 902
NlaIV	GGNNCC	2 cut(s)	106, 115
NmeAIII	GCCGAG	1 cut(s)	857
NmuCI	GTSAC	1 cut(s)	787
NsiI	ATGCAT	1 cut(s)	144
PfeI	GAWTC	4 cut(s)	13, 148, 446, 647
PflMI	CCANNNNNTGG	1 cut(s)	329
PkrI	GCNGC	4 cut(s)	267, 427, 430, 830
PleI	GAGTC	2 cut(s)	13, 372
PluTI	GGCGCC	1 cut(s)	108
PpsI	GAGTC	2 cut(s)	13, 372
PpuMI	RGGWCCY	1 cut(s)	113
PshBI	ATTAAT	1 cut(s)	389
Psp5II	RGGWCCY	1 cut(s)	113
Psp6I	CCWGG	1 cut(s)	702
PspEI	GGTNACC	1 cut(s)	787
PspFI	CCCAGC	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	702
PspN4I	GGNNCC	2 cut(s)	106, 115
PspPI	GGNCC	4 cut(s)	54, 113, 434, 487
PspPPI	RGGWCCY	1 cut(s)	113
PsuI	RGATCY	2 cut(s)	178, 679
PvuII	CAGCTG	2 cut(s)	431, 828
RsaI	GTAC	5 cut(s)	38, 172, 754, 821, 877
RsaNI	GTAC	5 cut(s)	37, 171, 753, 820, 876
SaqAI	TTAA	2 cut(s)	317, 389
SatI	GCNGC	4 cut(s)	266, 426, 429, 829
Sau3AI	GATC	7 cut(s)	152, 178, 346, 605, 679, 812, 936
Sau96I	GGNCC	4 cut(s)	54, 113, 434, 487
ScaI	AGTACT	2 cut(s)	172, 877
SchI	GAGTC	2 cut(s)	13, 373
ScrFI	CCNGG	3 cut(s)	41, 183, 704
SduI	GDGCHC	1 cut(s)	274
SfaNI	GCATC	1 cut(s)	34
SfcI	CTRYAG	1 cut(s)	871
SfoI	GGCGCC	1 cut(s)	106
SinI	GGWCC	3 cut(s)	54, 113, 487
SmlI	CTYRAG	3 cut(s)	581, 770, 918
SmoI	CTYRAG	3 cut(s)	581, 770, 918
Sse9I	AATT	5 cut(s)	125, 187, 204, 529, 776
SsiI	CCGC	6 cut(s)	61, 81, 164, 221, 268, 426
SspDI	GGCGCC	1 cut(s)	104
SspMI	CTAG	2 cut(s)	692, 912
StyD4I	CCNGG	3 cut(s)	39, 181, 702
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	5 cut(s)	58, 211, 294, 757, 875
TaiI	ACGT	1 cut(s)	468
TaqI	TCGA	3 cut(s)	123, 151, 811
TasI	AATT	5 cut(s)	125, 187, 204, 529, 776
TatI	WGTACW	4 cut(s)	170, 752, 819, 875
TauI	GCSGC	1 cut(s)	428
TfiI	GAWTC	4 cut(s)	13, 148, 446, 647
Tru1I	TTAA	2 cut(s)	317, 389
Tru9I	TTAA	2 cut(s)	317, 389
TseFI	GTSAC	1 cut(s)	787
TseI	GCWGC	3 cut(s)	265, 428, 828
Tsp45I	GTSAC	1 cut(s)	787
TspDTI	ATGAA	3 cut(s)	602, 648, 689
TspGWI	ACGGA	1 cut(s)	500
Van91I	CCANNNNNTGG	1 cut(s)	329
VpaK11BI	GGWCC	3 cut(s)	54, 113, 487
VspI	ATTAAT	1 cut(s)	389
XmiI	GTMKAC	1 cut(s)	217
XspI	CTAG	2 cut(s)	692, 912
ZrmI	AGTACT	2 cut(s)	172, 877
Zsp2I	ATGCAT	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.