MD04G1196100.v1.1

Belongs to the syntaxin family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
28449206 .. 28452214
3009 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1196100.v1.1.491

Sequence Viewer

Length: 972 bp
ATGGCGACGAGGAATCGGACCTTGGTTTACAGAAAGTATAGGGATGCGTTGAAGAGCGTCCGCGCTCCCACGAGCTCCTCCGCTTCGAGCTCCGGCGCCGGTGGCGGCCCGGTCATTGAATTGGTCAGCACTTCGCTTTTGAATCCCAATCGGAATTATGCTCCGCTCAGTACTGAAGATCCCGGTAATTCAAGTCGGGGTGCACTTACTGTTGGTCTACCGCCAGCATGGGTGGATCTTTCGGAAGAGGTAGCAGCAAACGTGCAGCGTGCACGGGTAAAAATGGCTGAGCTGACTAAGGCTCATGCAAAAGCTTTAATGCCTTCTTTTGGAGACGGTAAAGAAGATCAACGTTTGATTGAGAGTCTTACGCAAGAGATAACTAATTTGATAAGGAAATCCGAGAAGAGACTACAGAGGCTTTCTGCAGCTGGGCCTTCTGAAGATTCAAATGTTAGAAAAAATGTGCAGCGCTCTCTTGCCACTGACCTTCAGACCCTGTCAATGGACCTTCGCAAGAAACAATCAACTTATTTGAAGCGACTCAGGCAGCAAACAGAGGGTCAAGATGGGGATGATTTAGAGATGAACCTAAATGGAAGTACATCGAGAATGGACGGTGATGATTTGGATGACATGATGTTTAATGAGCGTCAGATGGCCAAGATAAAGAAAAACGAGGCATTCACAGCAGAAAGGGAAAGAGAGATCCAACAGGTTGTGGAGTCTGTGAATGAGCTTGCTCAGATTATGAAGGATTTGTCAGTACTAGTGATAGACCAGGGAACTATTGTTGATAGGATAGACTACAACATTCAGAATGTAGCAAGTACAGTCGATGAGGGCCTCAAGCAATTGCAAAAGGCTGAGAGAACACAGAAACAAGGGGGGATGGTGATGTGTGCTACCGTACTCGTTATCATGTGCTTTGTCATGTTGGTCCTCCTAATCCTCAAGGAGATATTCTTTTGA

Protein Analysis

324

Amino Acids

35.91

Weight (kDa)

7.68

Isoelectric Point (pI)

44.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNARE PF05739 263 - 315 2e-16 SNARE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 95
AccBSI CCGCTC 1 cut(s) 166
AccI GTMKAC 1 cut(s) 217
AccII CGCG 1 cut(s) 63
AciI CCGC 5 cut(s) 61, 81, 105, 164, 221
AclI AACGTT 1 cut(s) 352
AclWI GGATC 3 cut(s) 173, 243, 703
AcoI YGGCCR 1 cut(s) 660
AcuI CTGAAG 3 cut(s) 195, 462, 476
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 5 cut(s) 172, 604, 768, 832, 912
AfeI AGCGCT 1 cut(s) 473
AfiI CCNNNNNNNGG 2 cut(s) 329, 505
AgsI TTSAA 6 cut(s) 52, 119, 142, 192, 450, 538
AhlI ACTAGT 1 cut(s) 769
AjnI CCWGG 1 cut(s) 780
AjuI GAANNNNNNNTTGG 1 cut(s) 37
AluBI AGCT 6 cut(s) 75, 90, 292, 314, 431, 739
AluI AGCT 6 cut(s) 75, 90, 292, 314, 431, 739
Alw21I GWGCWC 4 cut(s) 77, 92, 205, 274
Alw26I GTCTC 2 cut(s) 327, 403
Alw44I GTGCAC 2 cut(s) 201, 270
AlwI GGATC 3 cut(s) 173, 243, 703
AlwNI CAGNNNCTG 1 cut(s) 499
Aor51HI AGCGCT 1 cut(s) 473
AoxI GGCC 4 cut(s) 106, 434, 660, 844
ApaLI GTGCAC 2 cut(s) 201, 270
ApeKI GCWGC 5 cut(s) 254, 265, 428, 469, 550
ArsI GACNNNNNNTTYG 2 cut(s) 547, 579
AspLEI GCGC 3 cut(s) 65, 98, 474
AspS9I GGNCC 6 cut(s) 18, 107, 434, 508, 844, 940
AsuC2I CCSGG 2 cut(s) 110, 183
AsuHPI GGTGA 2 cut(s) 632, 907
AvaII GGWCC 3 cut(s) 18, 508, 940
BaeGI GKGCMC 2 cut(s) 205, 274
BalI TGGCCA 1 cut(s) 662
BanI GGYRCC 1 cut(s) 95
BanII GRGCYC 2 cut(s) 77, 92
BauI CACGAG 1 cut(s) 70
Bbv12I GWGCWC 4 cut(s) 77, 92, 205, 274
BbvI GCAGC 5 cut(s) 266, 277, 440, 481, 562
BccI CCATC 3 cut(s) 563, 652, 886
BciT130I CCWGG 1 cut(s) 782
BcnI CCSGG 2 cut(s) 110, 183
BcoDI GTCTC 2 cut(s) 327, 403
BcuI ACTAGT 1 cut(s) 769
BfaI CTAG 1 cut(s) 770
BfmI CTRYAG 2 cut(s) 413, 426
BfoI RGCGCY 2 cut(s) 99, 475
BisI GCNGC 6 cut(s) 106, 255, 266, 429, 470, 551
BlpI GCTNAGC 1 cut(s) 288
BlsI GCNGC 6 cut(s) 107, 256, 267, 430, 471, 552
BmcAI AGTACT 2 cut(s) 172, 768
Bme1390I CCNGG 3 cut(s) 110, 183, 782
Bme18I GGWCC 3 cut(s) 18, 508, 940
BmgT120I GGNCC 6 cut(s) 18, 107, 434, 508, 844, 940
BmiI GGNNCC 1 cut(s) 97
BmrFI CCNGG 3 cut(s) 110, 183, 782
BmsI GCATC 1 cut(s) 34
Bpu1102I GCTNAGC 1 cut(s) 288
BpuEI CTTGAG 2 cut(s) 833, 938
BpuMI CCSGG 2 cut(s) 110, 183
BsaHI GRCGYC 1 cut(s) 96
BsaJI CCNNGG 2 cut(s) 21, 781
Bsc4I CCNNNNNNNGG 2 cut(s) 329, 505
Bse118I RCCGGY 1 cut(s) 98
BseBI CCWGG 1 cut(s) 782
BseDI CCNNGG 2 cut(s) 21, 781
BseGI GGATG 4 cut(s) 49, 580, 637, 897
BseLI CCNNNNNNNGG 2 cut(s) 329, 505
BseMII CTCAG 5 cut(s) 181, 279, 559, 758, 858
BseRI GAGGAG 1 cut(s) 67
BseSI GKGCMC 2 cut(s) 205, 274
BseXI GCAGC 5 cut(s) 266, 277, 440, 481, 562
BseYI CCCAGC 1 cut(s) 431
BsgI GTGCAG 2 cut(s) 284, 488
Bsh1236I CGCG 1 cut(s) 63
BshFI GGCC 4 cut(s) 108, 436, 662, 846
BshNI GGYRCC 1 cut(s) 95
BsiHKAI GWGCWC 4 cut(s) 77, 92, 205, 274
BsiSI CCGG 4 cut(s) 93, 99, 110, 183
BslI CCNNNNNNNGG 2 cut(s) 329, 505
BsmAI GTCTC 2 cut(s) 327, 403
BsmBI CGTCTC 1 cut(s) 327
BsmI GAATGC 1 cut(s) 683
BsnI GGCC 4 cut(s) 108, 436, 662, 846
Bsp1286I GDGCHC 4 cut(s) 77, 92, 205, 274
Bsp143I GATC 4 cut(s) 178, 235, 346, 708
Bsp1720I GCTNAGC 1 cut(s) 288
BspACI CCGC 5 cut(s) 61, 81, 105, 164, 221
BspANI GGCC 4 cut(s) 108, 436, 662, 846
BspCNI CTCAG 5 cut(s) 180, 280, 558, 757, 859
BspFNI CGCG 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 97
BspMAI CTGCAG 1 cut(s) 430
BspPI GGATC 3 cut(s) 173, 243, 703
BspQI GCTCTTC 1 cut(s) 47
BspT107I GGYRCC 1 cut(s) 95
BsrBI CCGCTC 1 cut(s) 166
BsrFI RCCGGY 1 cut(s) 98
BssAI RCCGGY 1 cut(s) 98
BssECI CCNNGG 2 cut(s) 21, 781
BssMI GATC 4 cut(s) 178, 235, 346, 708
BssNI GRCGYC 1 cut(s) 96
BssSI CACGAG 1 cut(s) 70
BssT1I CCWWGG 1 cut(s) 21
Bst2BI CACGAG 1 cut(s) 70
Bst2UI CCWGG 1 cut(s) 782
Bst4CI ACNGT 5 cut(s) 211, 338, 620, 835, 910
Bst6I CTCTTC 3 cut(s) 47, 240, 401
BstACI GRCGYC 1 cut(s) 96
BstC8I GCNNGC 3 cut(s) 225, 270, 741
BstDEI CTNAG 6 cut(s) 167, 288, 297, 545, 744, 867
BstF5I GGATG 4 cut(s) 49, 580, 637, 897
BstFNI CGCG 1 cut(s) 63
BstH2I RGCGCY 2 cut(s) 99, 475
BstHHI GCGC 3 cut(s) 65, 98, 474
BstKTI GATC 4 cut(s) 181, 238, 349, 711
BstMAI GTCTC 2 cut(s) 327, 403
BstMBI GATC 4 cut(s) 178, 235, 346, 708
BstMWI GCNNNNNNNGC 3 cut(s) 102, 547, 689
BstNI CCWGG 1 cut(s) 782
BstSCI CCNGG 3 cut(s) 108, 181, 780
BstSFI CTRYAG 2 cut(s) 413, 426
BstSLI GKGCMC 2 cut(s) 205, 274
BstUI CGCG 1 cut(s) 63
BstV1I GCAGC 5 cut(s) 266, 277, 440, 481, 562
BstX2I RGATCY 3 cut(s) 178, 235, 708
BstYI RGATCY 3 cut(s) 178, 235, 708
BsuRI GGCC 4 cut(s) 108, 436, 662, 846
BtsCI GGATG 4 cut(s) 49, 580, 637, 897
BtsIMutI CAGTG 1 cut(s) 483
Cac8I GCNNGC 3 cut(s) 225, 270, 741
CaiI CAGNNNCTG 1 cut(s) 499
CfoI GCGC 3 cut(s) 65, 98, 474
Cfr10I RCCGGY 1 cut(s) 98
Cfr13I GGNCC 6 cut(s) 18, 107, 434, 508, 844, 940
CseI GACGC 2 cut(s) 46, 641
Csp6I GTAC 5 cut(s) 171, 603, 767, 831, 911
CviAII CATG 5 cut(s) 228, 305, 637, 922, 934
CviQI GTAC 5 cut(s) 171, 603, 767, 831, 911
DdeI CTNAG 6 cut(s) 167, 288, 297, 545, 744, 867
DinI GGCGCC 1 cut(s) 97
DpnI GATC 4 cut(s) 180, 237, 348, 710
DpnII GATC 4 cut(s) 178, 235, 346, 708
EaeI YGGCCR 1 cut(s) 660
Eam1104I CTCTTC 3 cut(s) 47, 240, 401
EarI CTCTTC 3 cut(s) 47, 240, 401
Ecl136II GAGCTC 2 cut(s) 75, 90
Eco130I CCWWGG 1 cut(s) 21
Eco24I GRGCYC 2 cut(s) 77, 92
Eco47I GGWCC 3 cut(s) 18, 508, 940
Eco47III AGCGCT 1 cut(s) 473
Eco53kI GAGCTC 2 cut(s) 75, 90
Eco57I CTGAAG 3 cut(s) 195, 462, 476
EcoICRI GAGCTC 2 cut(s) 75, 90
EcoO109I RGGNCCY 1 cut(s) 844
EcoRII CCWGG 1 cut(s) 780
EcoT14I CCWWGG 1 cut(s) 21
EcoT38I GRGCYC 2 cut(s) 77, 92
EgeI GGCGCC 1 cut(s) 97
EheI GGCGCC 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 21
Esp3I CGTCTC 1 cut(s) 327
FaeI CATG 5 cut(s) 231, 308, 640, 925, 937
FaiI YATR 8 cut(s) 39, 159, 229, 306, 638, 752, 923, 935
FatI CATG 5 cut(s) 227, 304, 636, 921, 933
FblI GTMKAC 1 cut(s) 217
Fnu4HI GCNGC 6 cut(s) 106, 255, 266, 429, 470, 551
FokI GGATG 4 cut(s) 56, 587, 644, 904
FriOI GRGCYC 2 cut(s) 77, 92
Fsp4HI GCNGC 6 cut(s) 106, 255, 266, 429, 470, 551
FspBI CTAG 1 cut(s) 770
GlaI GCGC 3 cut(s) 64, 97, 473
GluI GCNGC 6 cut(s) 106, 255, 266, 429, 470, 551
GsaI CCCAGC 1 cut(s) 435
HaeII RGCGCY 2 cut(s) 99, 475
HaeIII GGCC 4 cut(s) 108, 436, 662, 846
HapII CCGG 4 cut(s) 93, 99, 110, 183
HgaI GACGC 2 cut(s) 46, 641
HhaI GCGC 3 cut(s) 65, 98, 474
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 5 cut(s) 231, 308, 640, 925, 937
Hin6I GCGC 3 cut(s) 63, 96, 472
HinP1I GCGC 3 cut(s) 63, 96, 472
HindIII AAGCTT 1 cut(s) 312
HinfI GANTC 6 cut(s) 13, 142, 364, 446, 543, 725
HpaII CCGG 4 cut(s) 93, 99, 110, 183
HphI GGTGA 2 cut(s) 632, 907
Hpy166II GTNNAC 4 cut(s) 28, 203, 218, 272
Hpy188I TCNGA 9 cut(s) 18, 153, 244, 403, 442, 495, 657, 747, 819
Hpy188III TCNNGA 2 cut(s) 566, 609
Hpy8I GTNNAC 4 cut(s) 28, 203, 218, 272
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 5 cut(s) 333, 447, 500, 521, 748
HpyCH4III ACNGT 5 cut(s) 211, 338, 620, 835, 910
HpyCH4IV ACGT 2 cut(s) 261, 352
HpyCH4V TGCA 7 cut(s) 203, 265, 272, 308, 428, 469, 859
HpyF10VI GCNNNNNNNGC 3 cut(s) 102, 547, 689
HpyF3I CTNAG 6 cut(s) 167, 288, 297, 545, 744, 867
HpySE526I ACGT 2 cut(s) 261, 352
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 5 cut(s) 231, 308, 640, 925, 937
HspAI GCGC 3 cut(s) 63, 96, 472
KasI GGCGCC 1 cut(s) 95
Kzo9I GATC 4 cut(s) 178, 235, 346, 708
LguI GCTCTTC 1 cut(s) 47
LmnI GCTCC 4 cut(s) 70, 80, 95, 166
Lsp1109I GCAGC 5 cut(s) 266, 277, 440, 481, 562
LweI GCATC 1 cut(s) 34
MaeI CTAG 1 cut(s) 770
MaeII ACGT 2 cut(s) 261, 352
MalI GATC 4 cut(s) 180, 237, 348, 710
MbiI CCGCTC 1 cut(s) 166
MboI GATC 4 cut(s) 178, 235, 346, 708
MboII GAAGA 6 cut(s) 64, 188, 257, 356, 418, 455
MfeI CAATTG 1 cut(s) 854
MflI RGATCY 3 cut(s) 178, 235, 708
MhlI GDGCHC 4 cut(s) 77, 92, 205, 274
MlsI TGGCCA 1 cut(s) 662
MluCI AATT 5 cut(s) 119, 154, 187, 385, 854
MluNI TGGCCA 1 cut(s) 662
Mly113I GGCGCC 1 cut(s) 96
MlyI GAGTC 3 cut(s) 373, 537, 734
MmeI TCCRAC 1 cut(s) 736
Mox20I TGGCCA 1 cut(s) 662
MscI TGGCCA 1 cut(s) 662
MseI TTAA 2 cut(s) 317, 645
Msp20I TGGCCA 1 cut(s) 662
MspA1I CMGCKG 1 cut(s) 431
MspI CCGG 4 cut(s) 93, 99, 110, 183
MspR9I CCNGG 3 cut(s) 110, 183, 782
MunI CAATTG 1 cut(s) 854
Mva1269I GAATGC 1 cut(s) 683
MvaI CCWGG 1 cut(s) 782
MvnI CGCG 1 cut(s) 63
MwoI GCNNNNNNNGC 3 cut(s) 102, 547, 689
NarI GGCGCC 1 cut(s) 96
NciI CCSGG 2 cut(s) 110, 183
NdeII GATC 4 cut(s) 178, 235, 346, 708
NlaIII CATG 5 cut(s) 231, 308, 640, 925, 937
NlaIV GGNNCC 1 cut(s) 97
PciSI GCTCTTC 1 cut(s) 47
PctI GAATGC 1 cut(s) 683
PfeI GAWTC 3 cut(s) 13, 142, 446
PflFI GACNNNGTC 1 cut(s) 499
PkrI GCNGC 6 cut(s) 107, 256, 267, 430, 471, 552
PleI GAGTC 3 cut(s) 372, 537, 733
PluTI GGCGCC 1 cut(s) 99
PpsI GAGTC 3 cut(s) 372, 537, 733
Psp124BI GAGCTC 2 cut(s) 77, 92
Psp1406I AACGTT 1 cut(s) 352
Psp6I CCWGG 1 cut(s) 780
PspFI CCCAGC 1 cut(s) 431
PspGI CCWGG 1 cut(s) 780
PspN4I GGNNCC 1 cut(s) 97
PspPI GGNCC 6 cut(s) 18, 107, 434, 508, 844, 940
PstI CTGCAG 1 cut(s) 430
PstNI CAGNNNCTG 1 cut(s) 499
PsuI RGATCY 3 cut(s) 178, 235, 708
PsyI GACNNNGTC 1 cut(s) 499
PvuII CAGCTG 1 cut(s) 431
RsaI GTAC 5 cut(s) 172, 604, 768, 832, 912
RsaNI GTAC 5 cut(s) 171, 603, 767, 831, 911
SacI GAGCTC 2 cut(s) 77, 92
SapI GCTCTTC 1 cut(s) 47
SaqAI TTAA 2 cut(s) 317, 645
SatI GCNGC 6 cut(s) 106, 255, 266, 429, 470, 551
Sau3AI GATC 4 cut(s) 178, 235, 346, 708
Sau96I GGNCC 6 cut(s) 18, 107, 434, 508, 844, 940
ScaI AGTACT 2 cut(s) 172, 768
SchI GAGTC 3 cut(s) 373, 537, 734
ScrFI CCNGG 3 cut(s) 110, 183, 782
SduI GDGCHC 4 cut(s) 77, 92, 205, 274
SfaNI GCATC 1 cut(s) 34
SfcI CTRYAG 2 cut(s) 413, 426
SfoI GGCGCC 1 cut(s) 97
SgrAI CRCCGGYG 1 cut(s) 98
SinI GGWCC 3 cut(s) 18, 508, 940
SmlI CTYRAG 2 cut(s) 848, 953
SmoI CTYRAG 2 cut(s) 848, 953
SpeI ACTAGT 1 cut(s) 769
Sse9I AATT 5 cut(s) 119, 154, 187, 385, 854
SsiI CCGC 5 cut(s) 61, 81, 105, 164, 221
SspDI GGCGCC 1 cut(s) 95
SspMI CTAG 1 cut(s) 770
SstI GAGCTC 2 cut(s) 77, 92
StyD4I CCNGG 3 cut(s) 108, 181, 780
StyI CCWWGG 1 cut(s) 21
TaaI ACNGT 5 cut(s) 211, 338, 620, 835, 910
TaiI ACGT 2 cut(s) 264, 355
TaqI TCGA 3 cut(s) 86, 608, 837
TasI AATT 5 cut(s) 119, 154, 187, 385, 854
TatI WGTACW 4 cut(s) 170, 602, 766, 830
TauI GCSGC 1 cut(s) 108
TfiI GAWTC 3 cut(s) 13, 142, 446
Tru1I TTAA 2 cut(s) 317, 645
Tru9I TTAA 2 cut(s) 317, 645
TscAI CASTG 1 cut(s) 490
TseI GCWGC 5 cut(s) 254, 265, 428, 469, 550
TspDTI ATGAA 2 cut(s) 602, 767
TspRI CASTG 1 cut(s) 490
Tth111I GACNNNGTC 1 cut(s) 499
VneI GTGCAC 2 cut(s) 201, 270
VpaK11BI GGWCC 3 cut(s) 18, 508, 940
XmiI GTMKAC 1 cut(s) 217
XspI CTAG 1 cut(s) 770
ZrmI AGTACT 2 cut(s) 172, 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.