Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0010026

Physical Location & Seq

Genomic Coordinates Reverse (-)

28815352 .. 28818654

Gene Structure 3303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1209100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCGACGAGGAATCGGACCTTGGTTTTCAGGAAGTATAGGGATGCGTTGAAGAGCGTCCGCGCTCCCACGAGCTCCTACGCTTCGCCATCTACGAGCTCCGGTGGCGGTCCGGTCATTGAATTGGTCAGCACTTCGCTTTTGAATCCCAACCGGAATTATGCCCCGCTCAGTACTGAGGATCCCGGTAATTCAAGTCGTGGTGCACTTACTGTTGGTCTACCGCCAGCATGGGTGGATCTATCTGAAGAGATAGCAGCAAACGTGCAGCGTGCACGGGTAAAAATGGCTGAGCTAACTAAGGCTCATGCAAAGGCTTTAATGCCTTCTTTTGGAGACGGTAAAGAAGATCAACGCTTGATTGAGAGTCTTACGCAAGAGATAACGAATTTGATAAGGAAATCTGAGAAGACACTACAGAGACTTTCTGCAGCTGGGCCTTTTGAAGATTCAAATGTTAGAAAAAATGTGCAGCGATCTCTTGCCACTGACCTTCAAACCCTCTCAATGGACCTTCGCAAGAAACAGTCAACTTATTTGAGGCGACTCAGGCAGCAAACAGAGGGTCAAGATGGGGATGATTTAGAGATGAACCTAAATGGAAGTACGTCGAGAATGGATGGTGATGATTTGGATGACATGATGTTTAATGAGCGTCAGATGGCCAAGATAAAGAAAAACGAGGCAGTCACAGCAGAAAGGGAAAGAGAGATCCAACAGGTTGTGCAATCTGTGAATGAGCTTGCTCAGATAATGAAGGATTTGGCAGTACTAGTGATAGACCAGGGAACTATTGTTGATAGGATAGACTACAACATCCAGAATGTAGCAAGTACAGTCGATGAGGGCCTCAAGCAATTGCAAAAGGCTGAGAGAACACAGAAACAAGGGGGAATGGTGATGTGTGCTAGCATACTCGTTATCATGTGCTTTGTCATGTTGGTCCTCCTAATCCTCAAGGAGATATTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0002790 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006906 GO:0006996 GO:0007030 GO:0007034 GO:0008104 GO:0008150 GO:0009306 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032588 GO:0032940 GO:0032991 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

325

Amino Acids

36.11

Weight (kDa)

7.68

Isoelectric Point (pI)

48.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNARE	PF05739	264 - 316	5.2e-16	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05710 AT3G05710 AT5G26980 AT5G26980 AT5G26980
fragaria_vesca	FvH4_6g07100 FvH4_6g07100 FvH4_6g07100
malus_domestica	MD04G1196100.v1.1 MD12G1209100.v1.1
prunus_persica	Prupe.6G316200_v2.0.a1
pyrus_communis	pycom12g19630
rosa_chinensis	RchiOBHm_Chr3g0456681
rosa_laevigata	RLG00000025284
rosa_roxburghii	Rroxscaffold_11G00450400 Rroxscaffold_6G00422540
rosa_rugosa	Rorug03G0015000
rosa_samantha	Rh3AG075500 Rh3BG077400 Rh3DG079100
rosa_wichuraiana	Rw3G006470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	169
AccI	GTMKAC	1 cut(s)	220
AccII	CGCG	1 cut(s)	63
AciI	CCGC	4 cut(s)	61, 108, 167, 224
AclWI	GGATC	4 cut(s)	176, 189, 246, 706
AcoI	YGGCCR	1 cut(s)	663
AcsI	RAATTY	1 cut(s)	388
AcuI	CTGAAG	1 cut(s)	267
AfaI	GTAC	4 cut(s)	175, 607, 771, 835
AfiI	CCNNNNNNNGG	2 cut(s)	332, 508
AgsI	TTSAA	7 cut(s)	52, 122, 145, 195, 446, 453, 497
AhlI	ACTAGT	1 cut(s)	772
AjnI	CCWGG	1 cut(s)	783
AjuI	GAANNNNNNNTTGG	1 cut(s)	37
AluBI	AGCT	5 cut(s)	75, 99, 295, 434, 742
AluI	AGCT	5 cut(s)	75, 99, 295, 434, 742
Alw21I	GWGCWC	4 cut(s)	77, 101, 208, 277
Alw26I	GTCTC	2 cut(s)	330, 415
Alw44I	GTGCAC	2 cut(s)	204, 273
AlwI	GGATC	4 cut(s)	176, 189, 246, 706
AoxI	GGCC	3 cut(s)	437, 663, 847
ApaLI	GTGCAC	2 cut(s)	204, 273
ApeKI	GCWGC	5 cut(s)	257, 268, 431, 472, 553
ApoI	RAATTY	1 cut(s)	388
ArsI	GACNNNNNNTTYG	2 cut(s)	550, 582
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	6 cut(s)	18, 110, 437, 511, 847, 943
AsuC2I	CCSGG	1 cut(s)	186
AsuHPI	GGTGA	2 cut(s)	635, 910
AsuNHI	GCTAGC	1 cut(s)	908
AvaII	GGWCC	4 cut(s)	18, 110, 511, 943
BaeGI	GKGCMC	2 cut(s)	208, 277
BalI	TGGCCA	1 cut(s)	665
BamHI	GGATCC	1 cut(s)	181
BanII	GRGCYC	2 cut(s)	77, 101
BauI	CACGAG	1 cut(s)	70
BbsI	GAAGAC	1 cut(s)	416
Bbv12I	GWGCWC	4 cut(s)	77, 101, 208, 277
BbvI	GCAGC	5 cut(s)	269, 280, 443, 484, 565
BccI	CCATC	4 cut(s)	97, 566, 614, 655
BciT130I	CCWGG	1 cut(s)	785
BcnI	CCSGG	1 cut(s)	186
BcoDI	GTCTC	2 cut(s)	330, 415
BcuI	ACTAGT	1 cut(s)	772
BfaI	CTAG	2 cut(s)	773, 909
BfmI	CTRYAG	2 cut(s)	416, 429
BisI	GCNGC	5 cut(s)	258, 269, 432, 473, 554
BlpI	GCTNAGC	1 cut(s)	291
BlsI	GCNGC	5 cut(s)	259, 270, 433, 474, 555
BmcAI	AGTACT	2 cut(s)	175, 771
Bme1390I	CCNGG	2 cut(s)	186, 785
Bme18I	GGWCC	4 cut(s)	18, 110, 511, 943
BmgT120I	GGNCC	6 cut(s)	18, 110, 437, 511, 847, 943
BmiI	GGNNCC	1 cut(s)	183
BmrFI	CCNGG	2 cut(s)	186, 785
BmsI	GCATC	1 cut(s)	34
BmtI	GCTAGC	1 cut(s)	912
BpiI	GAAGAC	1 cut(s)	416
Bpu1102I	GCTNAGC	1 cut(s)	291
BpuEI	CTTGAG	2 cut(s)	836, 941
BpuMI	CCSGG	1 cut(s)	186
BsaJI	CCNNGG	2 cut(s)	21, 784
BsaWI	WCCGGW	3 cut(s)	101, 112, 153
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 508
BseBI	CCWGG	1 cut(s)	785
BseDI	CCNNGG	2 cut(s)	21, 784
BseGI	GGATG	5 cut(s)	49, 583, 625, 640, 816
BseLI	CCNNNNNNNGG	2 cut(s)	332, 508
BseMII	CTCAG	7 cut(s)	168, 184, 282, 396, 562, 761, 861
BseSI	GKGCMC	2 cut(s)	208, 277
BseXI	GCAGC	5 cut(s)	269, 280, 443, 484, 565
BseYI	CCCAGC	1 cut(s)	434
BsgI	GTGCAG	2 cut(s)	287, 491
Bsh1236I	CGCG	1 cut(s)	63
BshFI	GGCC	3 cut(s)	439, 665, 849
BsiHKAI	GWGCWC	4 cut(s)	77, 101, 208, 277
BsiSI	CCGG	4 cut(s)	102, 113, 154, 186
BslI	CCNNNNNNNGG	2 cut(s)	332, 508
BsmAI	GTCTC	2 cut(s)	330, 415
BsmBI	CGTCTC	1 cut(s)	330
BsnI	GGCC	3 cut(s)	439, 665, 849
Bsp1286I	GDGCHC	4 cut(s)	77, 101, 208, 277
Bsp143I	GATC	5 cut(s)	181, 238, 349, 476, 711
Bsp1720I	GCTNAGC	1 cut(s)	291
BspACI	CCGC	4 cut(s)	61, 108, 167, 224
BspANI	GGCC	3 cut(s)	439, 665, 849
BspCNI	CTCAG	7 cut(s)	169, 183, 283, 397, 561, 760, 862
BspFNI	CGCG	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	183
BspMAI	CTGCAG	1 cut(s)	433
BspOI	GCTAGC	1 cut(s)	912
BspPI	GGATC	4 cut(s)	176, 189, 246, 706
BspQI	GCTCTTC	1 cut(s)	47
BsrBI	CCGCTC	1 cut(s)	169
BssECI	CCNNGG	2 cut(s)	21, 784
BssMI	GATC	5 cut(s)	181, 238, 349, 476, 711
BssSI	CACGAG	1 cut(s)	70
BssT1I	CCWWGG	1 cut(s)	21
Bst2BI	CACGAG	1 cut(s)	70
Bst2UI	CCWGG	1 cut(s)	785
Bst4CI	ACNGT	4 cut(s)	214, 341, 528, 838
Bst6I	CTCTTC	2 cut(s)	47, 243
BstC8I	GCNNGC	4 cut(s)	228, 273, 744, 910
BstDEI	CTNAG	8 cut(s)	170, 177, 291, 300, 405, 548, 747, 870
BstF5I	GGATG	5 cut(s)	49, 583, 625, 640, 816
BstFNI	CGCG	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	5 cut(s)	184, 241, 352, 479, 714
BstMAI	GTCTC	2 cut(s)	330, 415
BstMBI	GATC	5 cut(s)	181, 238, 349, 476, 711
BstMWI	GCNNNNNNNGC	3 cut(s)	105, 550, 692
BstNI	CCWGG	1 cut(s)	785
BstSCI	CCNGG	2 cut(s)	184, 783
BstSFI	CTRYAG	2 cut(s)	416, 429
BstSLI	GKGCMC	2 cut(s)	208, 277
BstUI	CGCG	1 cut(s)	63
BstV1I	GCAGC	5 cut(s)	269, 280, 443, 484, 565
BstV2I	GAAGAC	1 cut(s)	416
BstX2I	RGATCY	3 cut(s)	181, 238, 711
BstYI	RGATCY	3 cut(s)	181, 238, 711
BsuRI	GGCC	3 cut(s)	439, 665, 849
BtsCI	GGATG	5 cut(s)	49, 583, 625, 640, 816
BtsIMutI	CAGTG	1 cut(s)	486
Cac8I	GCNNGC	4 cut(s)	228, 273, 744, 910
CfoI	GCGC	1 cut(s)	65
Cfr13I	GGNCC	6 cut(s)	18, 110, 437, 511, 847, 943
CpoI	CGGWCCG	1 cut(s)	110
CseI	GACGC	2 cut(s)	46, 644
Csp6I	GTAC	4 cut(s)	174, 606, 770, 834
CspI	CGGWCCG	1 cut(s)	110
CviAII	CATG	5 cut(s)	231, 308, 640, 925, 937
CviQI	GTAC	4 cut(s)	174, 606, 770, 834
DdeI	CTNAG	8 cut(s)	170, 177, 291, 300, 405, 548, 747, 870
DpnI	GATC	5 cut(s)	183, 240, 351, 478, 713
DpnII	GATC	5 cut(s)	181, 238, 349, 476, 711
EaeI	YGGCCR	1 cut(s)	663
Eam1104I	CTCTTC	2 cut(s)	47, 243
EarI	CTCTTC	2 cut(s)	47, 243
Ecl136II	GAGCTC	2 cut(s)	75, 99
Eco130I	CCWWGG	1 cut(s)	21
Eco24I	GRGCYC	2 cut(s)	77, 101
Eco47I	GGWCC	4 cut(s)	18, 110, 511, 943
Eco53kI	GAGCTC	2 cut(s)	75, 99
Eco57I	CTGAAG	1 cut(s)	267
EcoICRI	GAGCTC	2 cut(s)	75, 99
EcoO109I	RGGNCCY	1 cut(s)	847
EcoRII	CCWGG	1 cut(s)	783
EcoT14I	CCWWGG	1 cut(s)	21
EcoT38I	GRGCYC	2 cut(s)	77, 101
ErhI	CCWWGG	1 cut(s)	21
Esp3I	CGTCTC	1 cut(s)	330
FaeI	CATG	5 cut(s)	234, 311, 643, 928, 940
FaiI	YATR	8 cut(s)	39, 162, 232, 309, 641, 914, 926, 938
FatI	CATG	5 cut(s)	230, 307, 639, 924, 936
FauI	CCCGC	1 cut(s)	174
FblI	GTMKAC	1 cut(s)	220
Fnu4HI	GCNGC	5 cut(s)	258, 269, 432, 473, 554
FokI	GGATG	5 cut(s)	56, 590, 632, 647, 803
FriOI	GRGCYC	2 cut(s)	77, 101
Fsp4HI	GCNGC	5 cut(s)	258, 269, 432, 473, 554
FspBI	CTAG	2 cut(s)	773, 909
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	5 cut(s)	258, 269, 432, 473, 554
GsaI	CCCAGC	1 cut(s)	438
HaeIII	GGCC	3 cut(s)	439, 665, 849
HapII	CCGG	4 cut(s)	102, 113, 154, 186
HgaI	GACGC	2 cut(s)	46, 644
HhaI	GCGC	1 cut(s)	65
Hin1II	CATG	5 cut(s)	234, 311, 643, 928, 940
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HincII	GTYRAC	1 cut(s)	531
HindII	GTYRAC	1 cut(s)	531
HinfI	GANTC	5 cut(s)	13, 145, 367, 449, 546
HpaII	CCGG	4 cut(s)	102, 113, 154, 186
HphI	GGTGA	2 cut(s)	635, 910
Hpy166II	GTNNAC	4 cut(s)	206, 221, 275, 531
Hpy188I	TCNGA	5 cut(s)	18, 247, 406, 660, 750
Hpy188III	TCNNGA	4 cut(s)	31, 569, 612, 820
Hpy8I	GTNNAC	4 cut(s)	206, 221, 275, 531
Hpy99I	CGWCG	2 cut(s)	10, 613
HpyAV	CCTTC	4 cut(s)	336, 503, 524, 751
HpyCH4III	ACNGT	4 cut(s)	214, 341, 528, 838
HpyCH4IV	ACGT	2 cut(s)	264, 608
HpyCH4V	TGCA	8 cut(s)	206, 268, 275, 311, 431, 472, 727, 862
HpyF10VI	GCNNNNNNNGC	3 cut(s)	105, 550, 692
HpyF3I	CTNAG	8 cut(s)	170, 177, 291, 300, 405, 548, 747, 870
HpySE526I	ACGT	2 cut(s)	264, 608
Hsp92II	CATG	5 cut(s)	234, 311, 643, 928, 940
HspAI	GCGC	1 cut(s)	63
Kzo9I	GATC	5 cut(s)	181, 238, 349, 476, 711
LguI	GCTCTTC	1 cut(s)	47
LmnI	GCTCC	3 cut(s)	70, 80, 104
Lsp1109I	GCAGC	5 cut(s)	269, 280, 443, 484, 565
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	2 cut(s)	773, 909
MaeII	ACGT	2 cut(s)	264, 608
MaeIII	GTNAC	1 cut(s)	688
MalI	GATC	5 cut(s)	183, 240, 351, 478, 713
MbiI	CCGCTC	1 cut(s)	169
MboI	GATC	5 cut(s)	181, 238, 349, 476, 711
MboII	GAAGA	5 cut(s)	64, 260, 359, 421, 458
MfeI	CAATTG	1 cut(s)	857
MflI	RGATCY	3 cut(s)	181, 238, 711
MhlI	GDGCHC	4 cut(s)	77, 101, 208, 277
MlsI	TGGCCA	1 cut(s)	665
MluCI	AATT	5 cut(s)	122, 157, 190, 388, 857
MluNI	TGGCCA	1 cut(s)	665
MlyI	GAGTC	2 cut(s)	376, 540
MmeI	TCCRAC	1 cut(s)	739
Mox20I	TGGCCA	1 cut(s)	665
MscI	TGGCCA	1 cut(s)	665
MseI	TTAA	2 cut(s)	320, 648
Msp20I	TGGCCA	1 cut(s)	665
MspA1I	CMGCKG	1 cut(s)	434
MspI	CCGG	4 cut(s)	102, 113, 154, 186
MspR9I	CCNGG	2 cut(s)	186, 785
MunI	CAATTG	1 cut(s)	857
MvaI	CCWGG	1 cut(s)	785
MvnI	CGCG	1 cut(s)	63
MwoI	GCNNNNNNNGC	3 cut(s)	105, 550, 692
NciI	CCSGG	1 cut(s)	186
NdeII	GATC	5 cut(s)	181, 238, 349, 476, 711
NheI	GCTAGC	1 cut(s)	908
NlaIII	CATG	5 cut(s)	234, 311, 643, 928, 940
NlaIV	GGNNCC	1 cut(s)	183
NmuCI	GTSAC	1 cut(s)	688
PciSI	GCTCTTC	1 cut(s)	47
PcsI	WCGNNNNNNNCGW	1 cut(s)	92
PfeI	GAWTC	3 cut(s)	13, 145, 449
PkrI	GCNGC	5 cut(s)	259, 270, 433, 474, 555
PleI	GAGTC	2 cut(s)	375, 540
PpsI	GAGTC	2 cut(s)	375, 540
Psp124BI	GAGCTC	2 cut(s)	77, 101
Psp6I	CCWGG	1 cut(s)	783
PspFI	CCCAGC	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	783
PspN4I	GGNNCC	1 cut(s)	183
PspPI	GGNCC	6 cut(s)	18, 110, 437, 511, 847, 943
PstI	CTGCAG	1 cut(s)	433
PsuI	RGATCY	3 cut(s)	181, 238, 711
PvuII	CAGCTG	1 cut(s)	434
RsaI	GTAC	4 cut(s)	175, 607, 771, 835
RsaNI	GTAC	4 cut(s)	174, 606, 770, 834
Rsr2I	CGGWCCG	1 cut(s)	110
RsrII	CGGWCCG	1 cut(s)	110
SacI	GAGCTC	2 cut(s)	77, 101
SapI	GCTCTTC	1 cut(s)	47
SaqAI	TTAA	2 cut(s)	320, 648
SatI	GCNGC	5 cut(s)	258, 269, 432, 473, 554
Sau3AI	GATC	5 cut(s)	181, 238, 349, 476, 711
Sau96I	GGNCC	6 cut(s)	18, 110, 437, 511, 847, 943
ScaI	AGTACT	2 cut(s)	175, 771
SchI	GAGTC	2 cut(s)	376, 540
ScrFI	CCNGG	2 cut(s)	186, 785
SduI	GDGCHC	4 cut(s)	77, 101, 208, 277
SfaNI	GCATC	1 cut(s)	34
SfcI	CTRYAG	2 cut(s)	416, 429
SinI	GGWCC	4 cut(s)	18, 110, 511, 943
SmlI	CTYRAG	2 cut(s)	851, 956
SmoI	CTYRAG	2 cut(s)	851, 956
SpeI	ACTAGT	1 cut(s)	772
Sse9I	AATT	5 cut(s)	122, 157, 190, 388, 857
SsiI	CCGC	4 cut(s)	61, 108, 167, 224
SspMI	CTAG	2 cut(s)	773, 909
SstI	GAGCTC	2 cut(s)	77, 101
StyD4I	CCNGG	2 cut(s)	184, 783
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	4 cut(s)	214, 341, 528, 838
TaiI	ACGT	2 cut(s)	267, 611
TaqI	TCGA	2 cut(s)	611, 840
TasI	AATT	5 cut(s)	122, 157, 190, 388, 857
TatI	WGTACW	3 cut(s)	173, 769, 833
TfiI	GAWTC	3 cut(s)	13, 145, 449
Tru1I	TTAA	2 cut(s)	320, 648
Tru9I	TTAA	2 cut(s)	320, 648
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	1 cut(s)	688
TseI	GCWGC	5 cut(s)	257, 268, 431, 472, 553
Tsp45I	GTSAC	1 cut(s)	688
TspDTI	ATGAA	2 cut(s)	605, 770
TspRI	CASTG	1 cut(s)	493
VneI	GTGCAC	2 cut(s)	204, 273
VpaK11BI	GGWCC	4 cut(s)	18, 110, 511, 943
XapI	RAATTY	1 cut(s)	388
XmiI	GTMKAC	1 cut(s)	220
XspI	CTAG	2 cut(s)	773, 909
ZrmI	AGTACT	2 cut(s)	175, 771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.