Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010026

Physical Location & Seq

Genomic Coordinates Reverse (-)

9488133 .. 9491092

Gene Structure 2960 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G26980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCGACGAGGAATCGTACGTTGCTGTTTAGGAAGTACAGAAACTCTCTGAGAAGCGTCAGAGCTCCATTGTCGTCATCTTCATTGACGGGAACACGATCCGGCGGCGTTGGTCCGGTGATCGAGATGGCGAGTACTTCGTTATTGAATCCGAATCGCTCTTACGCTCCTATTAGTACCGAAGATCCTGGAACTTCTAGTAAAGGTGCGATAACAGTGGGCTTACCACCAGCTTGGGTTGATGTCTCTGAGGAGATATCTGTGAATATACAGCGTGCAAGGACTAAAATGGCTGAGTTGGGAAAGGCTCATGCCAAGGCGTTAATGCCATCGTTTGGGGATGGTAAAGAAGATCAACATAATATTGAGTCTTTGACACAGGAGATAACTTTTCTATTGAAGAAGTCTGAGAAGCAACTTCAGAGGCTTTCTGCTTCAGGGCCTTCTGAAGATTCAAATGTTAGGAAAAATGTGCAGCGGTCTCTTGCCACTGACCTCCAACTTCTTTCTATGGAGCTTCGCAAAAAACAGTCAACATATTTGAAACGCTTGAGGCAGCAAAAAGAGGATGGGATGGATTTAGAGATGAATCTGAGCAGAAACAGATATAGACCTGAAGAGGATGACTTTGGCGATATGTTAAACGAGCATCAGATGTCAAAGATAAAAAAGAGTGAAGAAGTATCTGTAGAGAGGGAGAAAGAGATACAACAGGTTGTAGAATCAGTAAACGATCTTGCTCAAATTATGAAGGATCTTTCTGCACTTGTGATAGATCAGGGTACAATAGTTGATCGGATAGACTATAATATCGAAAACGTCGCTACTACTGTTGAAGATGGTCTCAAACAACTACAGAAGGCAGAGCGAACGCAGAGACATGGAGGTATGGTGAAGTGCGCATCCGTGCTTGTCATCCTCTGTTTCATCATGCTGCTACTCTTAATCCTCAAGGAAATATTCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0002790 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006906 GO:0006996 GO:0007030 GO:0007034 GO:0008104 GO:0008150 GO:0009306 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032588 GO:0032940 GO:0032991 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

322

Amino Acids

36.13

Weight (kDa)

8.7

Isoelectric Point (pI)

59.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNARE	PF05739	262 - 314	2.4e-15	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010026)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05710 AT3G05710 AT5G26980 AT5G26980 AT5G26980
fragaria_vesca	FvH4_6g07100 FvH4_6g07100 FvH4_6g07100
malus_domestica	MD04G1196100.v1.1 MD12G1209100.v1.1
prunus_persica	Prupe.6G316200_v2.0.a1
pyrus_communis	pycom12g19630
rosa_chinensis	RchiOBHm_Chr3g0456681
rosa_laevigata	RLG00000025284
rosa_roxburghii	Rroxscaffold_11G00450400 Rroxscaffold_6G00422540
rosa_rugosa	Rorug03G0015000
rosa_samantha	Rh3AG075500 Rh3BG077400 Rh3DG079100
rosa_wichuraiana	Rw3G006470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	901
AccB7I	CCANNNNNTGG	1 cut(s)	335
AciI	CCGC	2 cut(s)	105, 478
AclWI	GGATC	3 cut(s)	93, 179, 762
AcuI	CTGAAG	4 cut(s)	404, 420, 468, 636
AfaI	GTAC	5 cut(s)	19, 38, 136, 178, 784
AfiI	CCNNNNNNNGG	1 cut(s)	335
AgsI	TTSAA	5 cut(s)	148, 400, 456, 544, 836
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	3 cut(s)	65, 233, 517
AluI	AGCT	3 cut(s)	65, 233, 517
Alw21I	GWGCWC	1 cut(s)	67
Alw26I	GTCTC	4 cut(s)	250, 486, 848, 871
AlwI	GGATC	3 cut(s)	93, 179, 762
AoxI	GGCC	1 cut(s)	440
ApeKI	GCWGC	3 cut(s)	475, 556, 934
AspLEI	GCGC	1 cut(s)	902
AspS9I	GGNCC	2 cut(s)	113, 440
AsuHPI	GGTGA	2 cut(s)	130, 904
AvaII	GGWCC	1 cut(s)	113
BaeI	ACNNNNGTAYC	2 cut(s)	774, 807
BanII	GRGCYC	1 cut(s)	67
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	3 cut(s)	487, 568, 921
BccI	CCATC	6 cut(s)	121, 335, 337, 563, 568, 833
BciT130I	CCWGG	1 cut(s)	189
BcoDI	GTCTC	4 cut(s)	250, 486, 848, 871
BfaI	CTAG	1 cut(s)	198
BfmI	CTRYAG	2 cut(s)	687, 854
BisI	GCNGC	4 cut(s)	106, 476, 557, 935
BlsI	GCNGC	4 cut(s)	107, 477, 558, 936
BmcAI	AGTACT	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	189
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	2 cut(s)	113, 440
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	2 cut(s)	658, 911
BpuEI	CTTGAG	2 cut(s)	571, 935
BsaI	GGTCTC	2 cut(s)	486, 848
BsaJI	CCNNGG	1 cut(s)	315
BsaWI	WCCGGW	1 cut(s)	115
BsaXI	ACNNNNNCTCC	2 cut(s)	876, 906
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	315
BseGI	GGATG	6 cut(s)	346, 574, 579, 628, 902, 915
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseMII	CTCAG	5 cut(s)	41, 240, 285, 399, 584
BseRI	GAGGAG	1 cut(s)	266
BseXI	GCAGC	3 cut(s)	487, 568, 921
BsgI	GTGCAG	2 cut(s)	494, 747
BshFI	GGCC	1 cut(s)	442
BsiHKAI	GWGCWC	1 cut(s)	67
BsiSI	CCGG	2 cut(s)	102, 116
BsiWI	CGTACG	1 cut(s)	17
BslI	CCNNNNNNNGG	1 cut(s)	335
BsmAI	GTCTC	4 cut(s)	250, 486, 848, 871
BsnI	GGCC	1 cut(s)	442
Bso31I	GGTCTC	2 cut(s)	486, 848
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	8 cut(s)	98, 120, 184, 352, 733, 754, 775, 793
BspACI	CCGC	2 cut(s)	105, 478
BspANI	GGCC	1 cut(s)	442
BspCNI	CTCAG	5 cut(s)	42, 241, 286, 400, 585
BspPI	GGATC	3 cut(s)	93, 179, 762
BspTNI	GGTCTC	2 cut(s)	486, 848
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	8 cut(s)	98, 120, 184, 352, 733, 754, 775, 793
BssT1I	CCWWGG	1 cut(s)	315
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	3 cut(s)	217, 531, 832
Bst6I	CTCTTC	1 cut(s)	612
BstC8I	GCNNGC	1 cut(s)	276
BstDEI	CTNAG	5 cut(s)	50, 249, 294, 408, 593
BstF5I	GGATG	6 cut(s)	346, 574, 579, 628, 902, 915
BstHHI	GCGC	1 cut(s)	902
BstKTI	GATC	8 cut(s)	101, 123, 187, 355, 736, 757, 778, 796
BstMAI	GTCTC	4 cut(s)	250, 486, 848, 871
BstMBI	GATC	8 cut(s)	98, 120, 184, 352, 733, 754, 775, 793
BstNI	CCWGG	1 cut(s)	189
BstSCI	CCNGG	1 cut(s)	187
BstSFI	CTRYAG	2 cut(s)	687, 854
BstV1I	GCAGC	3 cut(s)	487, 568, 921
BstX2I	RGATCY	2 cut(s)	184, 754
BstXI	CCANNNNNNTGG	1 cut(s)	234
BstYI	RGATCY	2 cut(s)	184, 754
BsuRI	GGCC	1 cut(s)	442
BtsCI	GGATG	6 cut(s)	346, 574, 579, 628, 902, 915
BtsIMutI	CAGTG	2 cut(s)	222, 489
Cac8I	GCNNGC	1 cut(s)	276
CfoI	GCGC	1 cut(s)	902
Cfr13I	GGNCC	2 cut(s)	113, 440
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	5 cut(s)	18, 37, 135, 177, 783
CviAII	CATG	3 cut(s)	311, 881, 931
CviJI	RGCY	8 cut(s)	65, 222, 233, 293, 308, 427, 442, 517
CviKI_1	RGCY	8 cut(s)	65, 222, 233, 293, 308, 427, 442, 517
CviQI	GTAC	5 cut(s)	18, 37, 135, 177, 783
DdeI	CTNAG	5 cut(s)	50, 249, 294, 408, 593
DpnI	GATC	8 cut(s)	100, 122, 186, 354, 735, 756, 777, 795
DpnII	GATC	8 cut(s)	98, 120, 184, 352, 733, 754, 775, 793
Eam1104I	CTCTTC	1 cut(s)	612
EarI	CTCTTC	1 cut(s)	612
Ecl136II	GAGCTC	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	315
Eco24I	GRGCYC	1 cut(s)	67
Eco31I	GGTCTC	2 cut(s)	486, 848
Eco32I	GATATC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	113
Eco53kI	GAGCTC	1 cut(s)	65
Eco57I	CTGAAG	4 cut(s)	404, 420, 468, 636
EcoICRI	GAGCTC	1 cut(s)	65
EcoO109I	RGGNCCY	1 cut(s)	440
EcoRII	CCWGG	1 cut(s)	187
EcoRV	GATATC	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	315
EcoT38I	GRGCYC	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	3 cut(s)	314, 884, 934
FatI	CATG	3 cut(s)	310, 880, 930
Fnu4HI	GCNGC	4 cut(s)	106, 476, 557, 935
FokI	GGATG	6 cut(s)	353, 581, 586, 635, 889, 902
FriOI	GRGCYC	1 cut(s)	67
Fsp4HI	GCNGC	4 cut(s)	106, 476, 557, 935
FspAI	RTGCGCAY	1 cut(s)	901
FspBI	CTAG	1 cut(s)	198
FspI	TGCGCA	1 cut(s)	901
GlaI	GCGC	1 cut(s)	901
GluI	GCNGC	4 cut(s)	106, 476, 557, 935
HaeIII	GGCC	1 cut(s)	442
HapII	CCGG	2 cut(s)	102, 116
HgaI	GACGC	1 cut(s)	46
HhaI	GCGC	1 cut(s)	902
Hin1II	CATG	3 cut(s)	314, 884, 934
Hin6I	GCGC	1 cut(s)	900
HinP1I	GCGC	1 cut(s)	900
HincII	GTYRAC	1 cut(s)	534
HindII	GTYRAC	1 cut(s)	534
HinfI	GANTC	7 cut(s)	13, 148, 154, 368, 452, 589, 722
HpaII	CCGG	2 cut(s)	102, 116
HphI	GGTGA	2 cut(s)	130, 904
Hpy166II	GTNNAC	2 cut(s)	534, 730
Hpy188III	TCNNGA	1 cut(s)	124
Hpy8I	GTNNAC	2 cut(s)	534, 730
Hpy99I	CGWCG	2 cut(s)	10, 824
HpyAV	CCTTC	3 cut(s)	453, 745, 853
HpyCH4III	ACNGT	3 cut(s)	217, 531, 832
HpyCH4IV	ACGT	2 cut(s)	20, 819
HpyCH4V	TGCA	3 cut(s)	278, 475, 764
HpyF3I	CTNAG	5 cut(s)	50, 249, 294, 408, 593
HpySE526I	ACGT	2 cut(s)	20, 819
Hsp92II	CATG	3 cut(s)	314, 884, 934
HspAI	GCGC	1 cut(s)	900
Kzo9I	GATC	8 cut(s)	98, 120, 184, 352, 733, 754, 775, 793
LmnI	GCTCC	3 cut(s)	70, 172, 514
Lsp1109I	GCAGC	3 cut(s)	487, 568, 921
LweI	GCATC	2 cut(s)	658, 911
MaeI	CTAG	1 cut(s)	198
MaeII	ACGT	2 cut(s)	20, 819
MalI	GATC	8 cut(s)	100, 122, 186, 354, 735, 756, 777, 795
MboI	GATC	8 cut(s)	98, 120, 184, 352, 733, 754, 775, 793
MboII	GAAGA	8 cut(s)	72, 194, 362, 412, 461, 629, 689, 848
MflI	RGATCY	2 cut(s)	184, 754
MhlI	GDGCHC	1 cut(s)	67
MluCI	AATT	1 cut(s)	744
MlyI	GAGTC	1 cut(s)	377
MmeI	TCCRAC	1 cut(s)	523
MseI	TTAA	3 cut(s)	323, 641, 944
MspA1I	CMGCKG	1 cut(s)	478
MspI	CCGG	2 cut(s)	102, 116
MspR9I	CCNGG	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	189
NdeII	GATC	8 cut(s)	98, 120, 184, 352, 733, 754, 775, 793
NlaIII	CATG	3 cut(s)	314, 884, 934
NsbI	TGCGCA	1 cut(s)	901
PfeI	GAWTC	6 cut(s)	13, 148, 154, 452, 589, 722
Pfl23II	CGTACG	1 cut(s)	17
PflMI	CCANNNNNTGG	1 cut(s)	335
PfoI	TCCNGGA	1 cut(s)	187
PkrI	GCNGC	4 cut(s)	107, 477, 558, 936
PleI	GAGTC	1 cut(s)	376
PpsI	GAGTC	1 cut(s)	376
Psp124BI	GAGCTC	1 cut(s)	67
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
PspLI	CGTACG	1 cut(s)	17
PspPI	GGNCC	2 cut(s)	113, 440
PsuI	RGATCY	2 cut(s)	184, 754
RsaI	GTAC	5 cut(s)	19, 38, 136, 178, 784
RsaNI	GTAC	5 cut(s)	18, 37, 135, 177, 783
SacI	GAGCTC	1 cut(s)	67
SaqAI	TTAA	3 cut(s)	323, 641, 944
SatI	GCNGC	4 cut(s)	106, 476, 557, 935
Sau3AI	GATC	8 cut(s)	98, 120, 184, 352, 733, 754, 775, 793
Sau96I	GGNCC	2 cut(s)	113, 440
ScaI	AGTACT	1 cut(s)	136
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	1 cut(s)	67
SfaNI	GCATC	2 cut(s)	658, 911
SfcI	CTRYAG	2 cut(s)	687, 854
SinI	GGWCC	1 cut(s)	113
SmlI	CTYRAG	2 cut(s)	550, 950
SmoI	CTYRAG	2 cut(s)	550, 950
Sse9I	AATT	1 cut(s)	744
SsiI	CCGC	2 cut(s)	105, 478
SspI	AATATT	2 cut(s)	364, 960
SspMI	CTAG	1 cut(s)	198
SstI	GAGCTC	1 cut(s)	67
StyD4I	CCNGG	1 cut(s)	187
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	3 cut(s)	217, 531, 832
TaiI	ACGT	2 cut(s)	23, 822
TaqI	TCGA	2 cut(s)	123, 813
TasI	AATT	1 cut(s)	744
TatI	WGTACW	2 cut(s)	36, 134
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	6 cut(s)	13, 148, 154, 452, 589, 722
Tru1I	TTAA	3 cut(s)	323, 641, 944
Tru9I	TTAA	3 cut(s)	323, 641, 944
TscAI	CASTG	2 cut(s)	222, 496
TseI	GCWGC	3 cut(s)	475, 556, 934
TspDTI	ATGAA	4 cut(s)	72, 602, 764, 916
TspGWI	ACGGA	1 cut(s)	895
TspRI	CASTG	2 cut(s)	222, 496
Van91I	CCANNNNNTGG	1 cut(s)	335
VpaK11BI	GGWCC	1 cut(s)	113
XspI	CTAG	1 cut(s)	198
ZrmI	AGTACT	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.