Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012466

Physical Location & Seq

Genomic Coordinates Reverse (-)

1825999 .. 1827917

Gene Structure 1919 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G06050.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGCGATGTCAATTCTAAAGCTAAGAAATTTATCGGCACTAAGATCGGCGGCAAATAGTGCCCGGATCGGAGTTTCATCGAGGGGTTTCTCAAAGCTCGCGGAAGGCACTGACATAACCTCGGCGGCGCCTGGCGTTTCTCTCCAGAAAGCTCGCAGCTGGGACGAAGGTGTTTCCTCCAAATTCTCCACCACGCCATTGTCAGATATCTTCAAGGGGAAGAAAGTCGTCATCTTTGGTCTTCCTGGGGCTTACACGGGAGTTTGTTCACAGCAGCATGTGCCTAGCTACAAGAGCCACATTGATAAGTTTAAAGCCAAAGGCATTGATTCTGTCATCTGTGTCTCTGTTAATGATCCCTTTGCTATCAATGGTTGGGCAGAGAAGCTTGGTGCCAAAGATGCAATTGAGTTTTATGGAGATTTTGATGGGAAATTTCACAAAAGCTTGGGGCTAGACAAGGATCTCTCTGCTGCATTGCTCGGGCCACGGTCTGAGAGATGGTCGGCTTATGTAGAAGACGGGAAGGTTAAGGCGGTGAATGTGGAAGAAGCACCGTCTGACTTCAAGGTTACAGGGGCAGAAGTCATCTTAGGACAGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010035 GO:0010038 GO:0016209 GO:0016491 GO:0016684 GO:0031974 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0051716 GO:0055114 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Redoxin

Protein Analysis

201

Amino Acids

21.45

Weight (kDa)

8.98

Isoelectric Point (pI)

36.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AhpC-TSA	PF00578	43 - 136	9.3e-10	AhpC/TSA family
Redoxin	PF08534	56 - 131	2.1e-17	Redoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06050
fragaria_vesca	FvH4_4g14840
malus_domestica	MD13G1185800.v1.1 MD16G1186600.v1.1
prunus_persica	Prupe.1G153400_v2.0.a1
pyrus_communis	pycom13g16030 pycom16g15640
rosa_chinensis	RchiOBHm_Chr4g0417421 RchiOBHm_Chr4g0417491
rosa_laevigata	RLG00000007904 RLG00000007910
rosa_multiflora	Rmu_sc0004142.1_g000019
rosa_roxburghii	Rroxscaffold_5G00361170
rosa_rugosa	Rorug04G0148000
rosa_samantha	Rh4AG211300 Rh4BG211500 Rh4CG222000 Rh4DG209000
rosa_wichuraiana	Rw4G017860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	127, 392
AccII	CGCG	1 cut(s)	101
AciI	CCGC	4 cut(s)	50, 101, 125, 536
AclWI	GGATC	3 cut(s)	74, 350, 471
AcsI	RAATTY	3 cut(s)	28, 182, 434
AcyI	GRCGYC	1 cut(s)	128
AgsI	TTSAA	2 cut(s)	214, 568
AjnI	CCWGG	2 cut(s)	130, 244
AluBI	AGCT	7 cut(s)	22, 97, 152, 159, 288, 388, 447
AluI	AGCT	7 cut(s)	22, 97, 152, 159, 288, 388, 447
Alw26I	GTCTC	1 cut(s)	349
AlwI	GGATC	3 cut(s)	74, 350, 471
Ama87I	CYCGRG	1 cut(s)	482
AoxI	GGCC	1 cut(s)	485
ApeKI	GCWGC	3 cut(s)	156, 274, 473
ApoI	RAATTY	3 cut(s)	28, 182, 434
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	1 cut(s)	485
AsuC2I	CCSGG	1 cut(s)	64
AsuHPI	GGTGA	1 cut(s)	550
AvaI	CYCGRG	1 cut(s)	482
BaeGI	GKGCMC	1 cut(s)	64
BanI	GGYRCC	2 cut(s)	127, 392
BbsI	GAAGAC	2 cut(s)	233, 525
BbvI	GCAGC	3 cut(s)	168, 286, 460
BccI	CCATC	2 cut(s)	422, 495
BcgI	CGANNNNNNTGC	2 cut(s)	27, 61
BciT130I	CCWGG	2 cut(s)	132, 246
BcnI	CCSGG	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	349
BfaI	CTAG	2 cut(s)	285, 455
BfoI	RGCGCY	1 cut(s)	131
BglII	AGATCT	1 cut(s)	600
BisI	GCNGC	5 cut(s)	51, 126, 157, 275, 474
BlsI	GCNGC	5 cut(s)	52, 127, 158, 276, 475
Bme1390I	CCNGG	3 cut(s)	64, 132, 246
BmeT110I	CYCGRG	1 cut(s)	482
BmgT120I	GGNCC	1 cut(s)	485
BmiI	GGNNCC	2 cut(s)	129, 394
BmrFI	CCNGG	3 cut(s)	64, 132, 246
BmsI	GCATC	1 cut(s)	391
BpiI	GAAGAC	2 cut(s)	233, 525
BpmI	CTGGAG	1 cut(s)	128
BpuMI	CCSGG	1 cut(s)	64
BsaHI	GRCGYC	1 cut(s)	128
BsaJI	CCNNGG	3 cut(s)	120, 245, 488
Bse3DI	GCAATG	1 cut(s)	476
BseBI	CCWGG	2 cut(s)	132, 246
BseDI	CCNNGG	3 cut(s)	120, 245, 488
BseMI	GCAATG	1 cut(s)	476
BseMII	CTCAG	1 cut(s)	486
BseSI	GKGCMC	1 cut(s)	64
BseXI	GCAGC	3 cut(s)	168, 286, 460
BseYI	CCCAGC	1 cut(s)	159
Bsh1236I	CGCG	1 cut(s)	101
BshFI	GGCC	1 cut(s)	487
BshNI	GGYRCC	2 cut(s)	127, 392
BsiHKCI	CYCGRG	1 cut(s)	482
BsiSI	CCGG	1 cut(s)	64
BslFI	GGGAC	1 cut(s)	176
BsmAI	GTCTC	1 cut(s)	349
BsmFI	GGGAC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	487
BsoBI	CYCGRG	1 cut(s)	482
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp143I	GATC	5 cut(s)	44, 66, 355, 463, 600
BspACI	CCGC	4 cut(s)	50, 101, 125, 536
BspANI	GGCC	1 cut(s)	487
BspCNI	CTCAG	1 cut(s)	487
BspFNI	CGCG	1 cut(s)	101
BspLI	GGNNCC	2 cut(s)	129, 394
BspPI	GGATC	3 cut(s)	74, 350, 471
BspT107I	GGYRCC	2 cut(s)	127, 392
BsrDI	GCAATG	1 cut(s)	476
BssECI	CCNNGG	3 cut(s)	120, 245, 488
BssMI	GATC	5 cut(s)	44, 66, 355, 463, 600
BssNI	GRCGYC	1 cut(s)	128
Bst2UI	CCWGG	2 cut(s)	132, 246
Bst4CI	ACNGT	2 cut(s)	492, 558
BstACI	GRCGYC	1 cut(s)	128
BstAPI	GCANNNNNTGC	2 cut(s)	59, 280
BstC8I	GCNNGC	2 cut(s)	99, 154
BstDEI	CTNAG	4 cut(s)	23, 41, 495, 592
BstDSI	CCRYGG	1 cut(s)	488
BstFNI	CGCG	1 cut(s)	101
BstH2I	RGCGCY	1 cut(s)	131
BstHHI	GCGC	1 cut(s)	130
BstKTI	GATC	5 cut(s)	47, 69, 358, 466, 603
BstMAI	GTCTC	1 cut(s)	349
BstMBI	GATC	5 cut(s)	44, 66, 355, 463, 600
BstMWI	GCNNNNNNNGC	4 cut(s)	59, 280, 294, 401
BstNI	CCWGG	2 cut(s)	132, 246
BstNSI	RCATGY	1 cut(s)	281
BstSCI	CCNGG	3 cut(s)	62, 130, 244
BstSLI	GKGCMC	1 cut(s)	64
BstUI	CGCG	1 cut(s)	101
BstV1I	GCAGC	3 cut(s)	168, 286, 460
BstV2I	GAAGAC	2 cut(s)	233, 525
BstX2I	RGATCY	2 cut(s)	463, 600
BstYI	RGATCY	2 cut(s)	463, 600
BsuRI	GGCC	1 cut(s)	487
BtgI	CCRYGG	1 cut(s)	488
BtgZI	GCGATG	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	2 cut(s)	99, 154
CfoI	GCGC	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	485
CviAII	CATG	1 cut(s)	278
DdeI	CTNAG	4 cut(s)	23, 41, 495, 592
DinI	GGCGCC	1 cut(s)	129
DpnI	GATC	5 cut(s)	46, 68, 357, 465, 602
DpnII	GATC	5 cut(s)	44, 66, 355, 463, 600
DraI	TTTAAA	1 cut(s)	313
Eco32I	GATATC	1 cut(s)	208
Eco88I	CYCGRG	1 cut(s)	482
EcoRII	CCWGG	2 cut(s)	130, 244
EcoRV	GATATC	1 cut(s)	208
EgeI	GGCGCC	1 cut(s)	129
EheI	GGCGCC	1 cut(s)	129
FaeI	CATG	1 cut(s)	281
FaiI	YATR	4 cut(s)	116, 279, 417, 513
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	1 cut(s)	277
Fnu4HI	GCNGC	5 cut(s)	51, 126, 157, 275, 474
Fsp4HI	GCNGC	5 cut(s)	51, 126, 157, 275, 474
FspBI	CTAG	2 cut(s)	285, 455
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	5 cut(s)	51, 126, 157, 275, 474
GsaI	CCCAGC	1 cut(s)	163
GsuI	CTGGAG	1 cut(s)	128
HaeII	RGCGCY	1 cut(s)	131
HaeIII	GGCC	1 cut(s)	487
HapII	CCGG	1 cut(s)	64
HhaI	GCGC	1 cut(s)	130
Hin1I	GRCGYC	1 cut(s)	128
Hin1II	CATG	1 cut(s)	281
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HindIII	AAGCTT	2 cut(s)	386, 445
HinfI	GANTC	1 cut(s)	329
HpaII	CCGG	1 cut(s)	64
HphI	GGTGA	1 cut(s)	550
Hpy166II	GTNNAC	1 cut(s)	269
Hpy188I	TCNGA	4 cut(s)	71, 205, 496, 562
Hpy188III	TCNNGA	1 cut(s)	145
Hpy8I	GTNNAC	1 cut(s)	269
HpyAV	CCTTC	3 cut(s)	98, 161, 520
HpyCH4III	ACNGT	2 cut(s)	492, 558
HpyCH4V	TGCA	2 cut(s)	404, 476
HpyF10VI	GCNNNNNNNGC	4 cut(s)	59, 280, 294, 401
HpyF3I	CTNAG	4 cut(s)	23, 41, 495, 592
Hsp92I	GRCGYC	1 cut(s)	128
Hsp92II	CATG	1 cut(s)	281
HspAI	GCGC	1 cut(s)	128
KasI	GGCGCC	1 cut(s)	127
Kzo9I	GATC	5 cut(s)	44, 66, 355, 463, 600
LpnPI	CCDG	8 cut(s)	77, 117, 144, 145, 158, 231, 258, 561
Lsp1109I	GCAGC	3 cut(s)	168, 286, 460
LweI	GCATC	1 cut(s)	391
MaeI	CTAG	2 cut(s)	285, 455
MaeIII	GTNAC	1 cut(s)	571
MalI	GATC	5 cut(s)	46, 68, 357, 465, 602
MboI	GATC	5 cut(s)	44, 66, 355, 463, 600
MboII	GAAGA	5 cut(s)	202, 232, 233, 530, 560
MfeI	CAATTG	1 cut(s)	405
MflI	RGATCY	2 cut(s)	463, 600
MhlI	GDGCHC	1 cut(s)	64
MluCI	AATT	5 cut(s)	12, 28, 182, 405, 434
Mly113I	GGCGCC	1 cut(s)	128
MnlI	CCTC	3 cut(s)	75, 130, 187
MseI	TTAA	3 cut(s)	312, 351, 531
MspA1I	CMGCKG	1 cut(s)	159
MspI	CCGG	1 cut(s)	64
MspR9I	CCNGG	3 cut(s)	64, 132, 246
MunI	CAATTG	1 cut(s)	405
MvaI	CCWGG	2 cut(s)	132, 246
MvnI	CGCG	1 cut(s)	101
MwoI	GCNNNNNNNGC	4 cut(s)	59, 280, 294, 401
NarI	GGCGCC	1 cut(s)	128
NciI	CCSGG	1 cut(s)	64
NdeII	GATC	5 cut(s)	44, 66, 355, 463, 600
NlaIII	CATG	1 cut(s)	281
NlaIV	GGNNCC	2 cut(s)	129, 394
NmeAIII	GCCGAG	1 cut(s)	101
NspI	RCATGY	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	329
PkrI	GCNGC	5 cut(s)	52, 127, 158, 276, 475
PluTI	GGCGCC	1 cut(s)	131
Psp6I	CCWGG	2 cut(s)	130, 244
PspFI	CCCAGC	1 cut(s)	159
PspGI	CCWGG	2 cut(s)	130, 244
PspN4I	GGNNCC	2 cut(s)	129, 394
PspPI	GGNCC	1 cut(s)	485
PsuI	RGATCY	2 cut(s)	463, 600
PvuII	CAGCTG	1 cut(s)	159
SaqAI	TTAA	3 cut(s)	312, 351, 531
SatI	GCNGC	5 cut(s)	51, 126, 157, 275, 474
Sau3AI	GATC	5 cut(s)	44, 66, 355, 463, 600
Sau96I	GGNCC	1 cut(s)	485
ScrFI	CCNGG	3 cut(s)	64, 132, 246
SduI	GDGCHC	1 cut(s)	64
SfaNI	GCATC	1 cut(s)	391
SfoI	GGCGCC	1 cut(s)	129
Sse9I	AATT	5 cut(s)	12, 28, 182, 405, 434
SsiI	CCGC	4 cut(s)	50, 101, 125, 536
SspDI	GGCGCC	1 cut(s)	127
SspMI	CTAG	2 cut(s)	285, 455
StyD4I	CCNGG	3 cut(s)	62, 130, 244
TaaI	ACNGT	2 cut(s)	492, 558
TaqI	TCGA	1 cut(s)	80
TasI	AATT	5 cut(s)	12, 28, 182, 405, 434
TauI	GCSGC	2 cut(s)	53, 128
TfiI	GAWTC	1 cut(s)	329
Tru1I	TTAA	3 cut(s)	312, 351, 531
Tru9I	TTAA	3 cut(s)	312, 351, 531
TscAI	CASTG	1 cut(s)	115
TseI	GCWGC	3 cut(s)	156, 274, 473
TspDTI	ATGAA	1 cut(s)	66
TspRI	CASTG	1 cut(s)	115
XapI	RAATTY	3 cut(s)	28, 182, 434
XceI	RCATGY	1 cut(s)	281
XspI	CTAG	2 cut(s)	285, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.