Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0012466

Physical Location & Seq

Genomic Coordinates Forward (+)

15817058 .. 15818947

Gene Structure 1890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1185800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGCGTCCACACTTCTGAAGCGAACGAGCTTCTCCGCAATGAAATCAGTGGTCAGAGGCTTCCAAATCGGAGCTCAATCAAGAGCCTACGCGGCGGCTGCAGTCGGGACCGACTTAGTCTCCGCCGCACCCAATGTTTCCCTCCAGAAAGCTCGCACCTGGGACGAAGGTGTCTCCTCCAACTTCGCCACCACTCCTCTCAAAGACATTTTCAAGGGCAAGAAAGTCGTCATCTTTGGACTCCCTGGTGCCTTCACTGGTGTTTGTTCTGCGCAACACGTGCCTAGTTACAAGAACCAAATTGATAAGTTTAAGGCTAAAGGGGTTGACTCTGTGATTTGTGTAGCTGTGAATGATCCATATGTTATGAAGGGCTGGGCAAACAACCTTGAAGCCAAAGAAGCTATTGAGTTCTATGGGGACTTCGATGGCAGCTTCCACAAAAGCTTGGAATTGGATAAAGATCTCAGTGGTGCTTTGCTTGGACACCGCTCTCAAAGATGGTCAGCTTATGTGGTCGACGGGAAGGTAAAAACTCTAAATGTGGAGGAAGTCCCATCAGACTTCAAGGTTTCTGGCGGGGATGTAATTTTGGGACAGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010035 GO:0010038 GO:0016209 GO:0016491 GO:0016684 GO:0031974 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0051716 GO:0055114 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Redoxin

Protein Analysis

202

Amino Acids

21.6

Weight (kDa)

8.98

Isoelectric Point (pI)

25.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AhpC-TSA	PF00578	42 - 153	3.5e-10	AhpC/TSA family
Redoxin	PF08534	43 - 192	3e-24	Redoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06050
fragaria_vesca	FvH4_4g14840
malus_domestica	MD13G1185800.v1.1 MD16G1186600.v1.1
prunus_persica	Prupe.1G153400_v2.0.a1
pyrus_communis	pycom13g16030 pycom16g15640
rosa_chinensis	RchiOBHm_Chr4g0417421 RchiOBHm_Chr4g0417491
rosa_laevigata	RLG00000007904 RLG00000007910
rosa_multiflora	Rmu_sc0004142.1_g000019
rosa_roxburghii	Rroxscaffold_5G00361170
rosa_rugosa	Rorug04G0148000
rosa_samantha	Rh4AG211300 Rh4BG211500 Rh4CG222000 Rh4DG209000
rosa_wichuraiana	Rw4G017860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
Acc16I	TGCGCA	1 cut(s)	273
AccB1I	GGYRCC	1 cut(s)	248
AccBSI	CCGCTC	1 cut(s)	492
AccI	GTMKAC	1 cut(s)	519
AccII	CGCG	1 cut(s)	92
AciI	CCGC	7 cut(s)	36, 92, 95, 123, 126, 490, 579
AclWI	GGATC	1 cut(s)	350
AcuI	CTGAAG	1 cut(s)	38
AcvI	CACGTG	1 cut(s)	280
AcyI	GRCGYC	1 cut(s)	5
AflIII	ACRYGT	1 cut(s)	277
AgsI	TTSAA	3 cut(s)	214, 392, 568
AjnI	CCWGG	2 cut(s)	158, 244
AluBI	AGCT	8 cut(s)	30, 74, 152, 347, 404, 435, 447, 509
AluI	AGCT	8 cut(s)	30, 74, 152, 347, 404, 435, 447, 509
Alw21I	GWGCWC	1 cut(s)	76
Alw26I	GTCTC	2 cut(s)	124, 178
AlwI	GGATC	1 cut(s)	350
ApeKI	GCWGC	2 cut(s)	98, 432
AspLEI	GCGC	1 cut(s)	274
AspS9I	GGNCC	1 cut(s)	108
AvaII	GGWCC	1 cut(s)	108
BanI	GGYRCC	1 cut(s)	248
BanII	GRGCYC	1 cut(s)	76
BbrPI	CACGTG	1 cut(s)	280
Bbv12I	GWGCWC	1 cut(s)	76
BbvI	GCAGC	2 cut(s)	85, 444
BccI	CCATC	3 cut(s)	422, 495, 565
BcgI	CGANNNNNNTGC	2 cut(s)	208, 242
BciT130I	CCWGG	2 cut(s)	160, 246
BcoDI	GTCTC	2 cut(s)	124, 178
BfaI	CTAG	2 cut(s)	285, 604
BfmI	CTRYAG	1 cut(s)	99
BglI	GCCNNNNNGGC	1 cut(s)	92
BglII	AGATCT	2 cut(s)	463, 600
BisI	GCNGC	5 cut(s)	93, 96, 99, 126, 433
BlsI	GCNGC	5 cut(s)	94, 97, 100, 127, 434
Bme1390I	CCNGG	2 cut(s)	160, 246
Bme18I	GGWCC	1 cut(s)	108
BmgT120I	GGNCC	1 cut(s)	108
BmiI	GGNNCC	2 cut(s)	109, 250
BmrFI	CCNGG	2 cut(s)	160, 246
BpmI	CTGGAG	1 cut(s)	128
BsaAI	YACGTR	1 cut(s)	280
BsaBI	GATNNNNATC	1 cut(s)	462
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	159, 244
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bse1I	ACTGG	1 cut(s)	262
Bse3DI	GCAATG	1 cut(s)	45
Bse8I	GATNNNNATC	1 cut(s)	462
BseBI	CCWGG	2 cut(s)	160, 246
BseDI	CCNNGG	2 cut(s)	159, 244
BseGI	GGATG	1 cut(s)	589
BseJI	GATNNNNATC	1 cut(s)	462
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	481
BseNI	ACTGG	1 cut(s)	262
BseRI	GAGGAG	2 cut(s)	166, 186
BseXI	GCAGC	2 cut(s)	85, 444
BseYI	CCCAGC	1 cut(s)	375
Bsh1236I	CGCG	1 cut(s)	92
BshNI	GGYRCC	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	76
BslFI	GGGAC	4 cut(s)	121, 176, 434, 539
BsmAI	GTCTC	2 cut(s)	124, 178
BsmFI	GGGAC	4 cut(s)	121, 176, 434, 539
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp143I	GATC	3 cut(s)	355, 463, 600
BspACI	CCGC	7 cut(s)	36, 92, 95, 123, 126, 490, 579
BspCNI	CTCAG	1 cut(s)	480
BspFNI	CGCG	1 cut(s)	92
BspLI	GGNNCC	2 cut(s)	109, 250
BspMAI	CTGCAG	1 cut(s)	103
BspPI	GGATC	1 cut(s)	350
BspT107I	GGYRCC	1 cut(s)	248
BsrBI	CCGCTC	1 cut(s)	492
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	262
BssECI	CCNNGG	2 cut(s)	159, 244
BssMI	GATC	3 cut(s)	355, 463, 600
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	2 cut(s)	160, 246
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	280
BstBAI	YACGTR	1 cut(s)	280
BstC8I	GCNNGC	1 cut(s)	154
BstDEI	CTNAG	2 cut(s)	115, 467
BstF5I	GGATG	1 cut(s)	589
BstFNI	CGCG	1 cut(s)	92
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	3 cut(s)	358, 466, 603
BstMAI	GTCTC	2 cut(s)	124, 178
BstMBI	GATC	3 cut(s)	355, 463, 600
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 98, 280, 401
BstNI	CCWGG	2 cut(s)	160, 246
BstSCI	CCNGG	2 cut(s)	158, 244
BstSFI	CTRYAG	1 cut(s)	99
BstUI	CGCG	1 cut(s)	92
BstV1I	GCAGC	2 cut(s)	85, 444
BstX2I	RGATCY	2 cut(s)	463, 600
BstYI	RGATCY	2 cut(s)	463, 600
BtsCI	GGATG	1 cut(s)	589
BtsIMutI	CAGTG	3 cut(s)	54, 255, 475
Cac8I	GCNNGC	1 cut(s)	154
CfoI	GCGC	1 cut(s)	274
Cfr13I	GGNCC	1 cut(s)	108
DdeI	CTNAG	2 cut(s)	115, 467
DpnI	GATC	3 cut(s)	357, 465, 602
DpnII	GATC	3 cut(s)	355, 463, 600
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
EciI	GGCGGA	1 cut(s)	112
Ecl136II	GAGCTC	1 cut(s)	74
Eco24I	GRGCYC	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	108
Eco53kI	GAGCTC	1 cut(s)	74
Eco57I	CTGAAG	1 cut(s)	38
Eco72I	CACGTG	1 cut(s)	280
EcoICRI	GAGCTC	1 cut(s)	74
EcoRII	CCWGG	2 cut(s)	158, 244
EcoT38I	GRGCYC	1 cut(s)	76
FaiI	YATR	5 cut(s)	361, 363, 368, 417, 513
FaqI	GGGAC	4 cut(s)	121, 176, 434, 539
FauI	CCCGC	1 cut(s)	572
FauNDI	CATATG	1 cut(s)	361
FblI	GTMKAC	1 cut(s)	519
Fnu4HI	GCNGC	5 cut(s)	93, 96, 99, 126, 433
FokI	GGATG	1 cut(s)	596
FriOI	GRGCYC	1 cut(s)	76
Fsp4HI	GCNGC	5 cut(s)	93, 96, 99, 126, 433
FspBI	CTAG	2 cut(s)	285, 604
FspI	TGCGCA	1 cut(s)	273
GlaI	GCGC	1 cut(s)	273
GluI	GCNGC	5 cut(s)	93, 96, 99, 126, 433
GsaI	CCCAGC	1 cut(s)	379
GsuI	CTGGAG	1 cut(s)	128
HhaI	GCGC	1 cut(s)	274
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HincII	GTYRAC	2 cut(s)	328, 520
HindII	GTYRAC	2 cut(s)	328, 520
HindIII	AAGCTT	1 cut(s)	445
HinfI	GANTC	2 cut(s)	240, 329
Hpy166II	GTNNAC	3 cut(s)	9, 328, 520
Hpy188I	TCNGA	4 cut(s)	18, 56, 71, 562
Hpy188III	TCNNGA	3 cut(s)	81, 106, 145
Hpy8I	GTNNAC	3 cut(s)	9, 328, 520
Hpy99I	CGWCG	1 cut(s)	524
HpyAV	CCTTC	4 cut(s)	161, 262, 364, 520
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	1 cut(s)	101
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 98, 280, 401
HpyF3I	CTNAG	2 cut(s)	115, 467
HpySE526I	ACGT	1 cut(s)	279
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	272
Kzo9I	GATC	3 cut(s)	355, 463, 600
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	8 cut(s)	145, 158, 172, 231, 243, 258, 361, 561
Lsp1109I	GCAGC	2 cut(s)	85, 444
MaeI	CTAG	2 cut(s)	285, 604
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	3 cut(s)	357, 465, 602
MbiI	CCGCTC	1 cut(s)	492
MboI	GATC	3 cut(s)	355, 463, 600
MflI	RGATCY	2 cut(s)	463, 600
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	3 cut(s)	300, 452, 588
MlyI	GAGTC	2 cut(s)	234, 323
MmeI	TCCRAC	1 cut(s)	204
MnlI	CCTC	5 cut(s)	50, 152, 187, 207, 541
MseI	TTAA	1 cut(s)	312
MspR9I	CCNGG	2 cut(s)	160, 246
MvaI	CCWGG	2 cut(s)	160, 246
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	4 cut(s)	92, 98, 280, 401
NdeI	CATATG	1 cut(s)	361
NdeII	GATC	3 cut(s)	355, 463, 600
NlaIV	GGNNCC	2 cut(s)	109, 250
NsbI	TGCGCA	1 cut(s)	273
PflFI	GACNNNGTC	1 cut(s)	116
PkrI	GCNGC	5 cut(s)	94, 97, 100, 127, 434
PleI	GAGTC	2 cut(s)	234, 323
PmaCI	CACGTG	1 cut(s)	280
PmlI	CACGTG	1 cut(s)	280
PpsI	GAGTC	2 cut(s)	234, 323
Ppu21I	YACGTR	1 cut(s)	280
Psp124BI	GAGCTC	1 cut(s)	76
Psp6I	CCWGG	2 cut(s)	158, 244
PspCI	CACGTG	1 cut(s)	280
PspFI	CCCAGC	1 cut(s)	375
PspGI	CCWGG	2 cut(s)	158, 244
PspN4I	GGNNCC	2 cut(s)	109, 250
PspPI	GGNCC	1 cut(s)	108
PstI	CTGCAG	1 cut(s)	103
PsuI	RGATCY	2 cut(s)	463, 600
PsyI	GACNNNGTC	1 cut(s)	116
SacI	GAGCTC	1 cut(s)	76
SalI	GTCGAC	1 cut(s)	518
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	5 cut(s)	93, 96, 99, 126, 433
Sau3AI	GATC	3 cut(s)	355, 463, 600
Sau96I	GGNCC	1 cut(s)	108
SchI	GAGTC	2 cut(s)	234, 323
ScrFI	CCNGG	2 cut(s)	160, 246
SduI	GDGCHC	1 cut(s)	76
SfcI	CTRYAG	1 cut(s)	99
SinI	GGWCC	1 cut(s)	108
Sse9I	AATT	3 cut(s)	300, 452, 588
SsiI	CCGC	7 cut(s)	36, 92, 95, 123, 126, 490, 579
SspMI	CTAG	2 cut(s)	285, 604
SstI	GAGCTC	1 cut(s)	76
StyD4I	CCNGG	2 cut(s)	158, 244
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	2 cut(s)	426, 519
TaqII	GACCGA	1 cut(s)	125
TasI	AATT	3 cut(s)	300, 452, 588
TauI	GCSGC	3 cut(s)	95, 98, 128
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TscAI	CASTG	3 cut(s)	54, 262, 475
TseI	GCWGC	2 cut(s)	98, 432
TspDTI	ATGAA	2 cut(s)	56, 383
TspRI	CASTG	3 cut(s)	54, 262, 475
Tth111I	GACNNNGTC	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	108
XmiI	GTMKAC	1 cut(s)	519
XspI	CTAG	2 cut(s)	285, 604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.