Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0012466

Physical Location & Seq

Genomic Coordinates Reverse (-)

40014586 .. 40016792

Gene Structure 2207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G017860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCGTCTACACTTCTAAAGCGAGCGTCCTACTCCGCGATGAGGTCGGCCGTCGGAATCGGAGCCTCCTCACGAGGCTACGCGGCGGTGGCAGTCGGTACGGACCTAGTCTCCGCCGCACCCGGTGTTTCCCTCCAGAAAGCTCGGAGCTGGGACGAGGGCGTCTCCTCCAAGTTCTCCACCACTCCTCTCAAAGACATTTTCAAGGACAAGAAAGTCGTCATCTTTGGCCTCCCTGGTGCGTATACGGGGGTTTGTTCGCAGCAGCATGTGCCTAGTTACAAGAGCAACATTGATAAGTTTAAGGCTAAAGGGATTGATTCTGTGATTTGTGTAGCGGTTAATGATCCCTATGTTTTGAATGGATGGGCAGATAAACTTGAAGCCAAAGATTCGATTGAGTTCTATGGGGATTTTGATGGGAGCTTCCACAAAAGCTTGGAGTTGGATAAAGATCTCTCTGTTGCTTTGCTTGGACCTCGTTCTGAGAGATGGTCGGCATATGTGGTTGACGGGAAGGTTAAAGTTCTAAATGTTGAGGATGCCCCATCAGACTTCAAGGTCTCTGGTGGAGATGTCATTTTGGGACAGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010035 GO:0010038 GO:0016209 GO:0016491 GO:0016684 GO:0031974 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0051716 GO:0055114 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Redoxin

Protein Analysis

198

Amino Acids

21.13

Weight (kDa)

7.69

Isoelectric Point (pI)

31.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Redoxin	PF08534	54 - 189	3.5e-20	Redoxin
AhpC-TSA	PF00578	56 - 147	4.5e-08	AhpC/TSA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06050
fragaria_vesca	FvH4_4g14840
malus_domestica	MD13G1185800.v1.1 MD16G1186600.v1.1
prunus_persica	Prupe.1G153400_v2.0.a1
pyrus_communis	pycom13g16030 pycom16g15640
rosa_chinensis	RchiOBHm_Chr4g0417421 RchiOBHm_Chr4g0417491
rosa_laevigata	RLG00000007904 RLG00000007910
rosa_multiflora	Rmu_sc0004142.1_g000019
rosa_roxburghii	Rroxscaffold_5G00361170
rosa_rugosa	Rorug04G0148000
rosa_samantha	Rh4AG211300 Rh4BG211500 Rh4CG222000 Rh4DG209000
rosa_wichuraiana	Rw4G017860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	161, 215, 560
AccI	GTMKAC	2 cut(s)	8, 245
AccII	CGCG	2 cut(s)	38, 83
AciI	CCGC	6 cut(s)	36, 83, 86, 114, 117, 338
AclWI	GGATC	1 cut(s)	341
AcoI	YGGCCR	1 cut(s)	48
AcyI	GRCGYC	2 cut(s)	5, 162
AdeI	CACNNNGTG	1 cut(s)	125
AfaI	GTAC	1 cut(s)	100
AfiI	CCNNNNNNNGG	1 cut(s)	42
AgsI	TTSAA	4 cut(s)	205, 361, 383, 559
AjnI	CCWGG	1 cut(s)	235
AluBI	AGCT	4 cut(s)	143, 150, 426, 438
AluI	AGCT	4 cut(s)	143, 150, 426, 438
Alw26I	GTCTC	3 cut(s)	115, 169, 568
AlwI	GGATC	1 cut(s)	341
AoxI	GGCC	2 cut(s)	48, 229
ApeKI	GCWGC	2 cut(s)	262, 265
AspS9I	GGNCC	2 cut(s)	103, 476
AsuC2I	CCSGG	1 cut(s)	123
AvaII	GGWCC	2 cut(s)	103, 476
BauI	CACGAG	1 cut(s)	72
BbvI	GCAGC	2 cut(s)	274, 277
BccI	CCATC	4 cut(s)	360, 413, 486, 556
BceAI	ACGGC	1 cut(s)	35
BciT130I	CCWGG	1 cut(s)	237
BcnI	CCSGG	1 cut(s)	123
BcoDI	GTCTC	3 cut(s)	115, 169, 568
BfaI	CTAG	3 cut(s)	107, 276, 595
BglII	AGATCT	2 cut(s)	454, 591
BisI	GCNGC	4 cut(s)	84, 117, 263, 266
BlsI	GCNGC	4 cut(s)	85, 118, 264, 267
Bme1390I	CCNGG	2 cut(s)	123, 237
Bme18I	GGWCC	2 cut(s)	103, 476
BmgT120I	GGNCC	2 cut(s)	103, 476
BmiI	GGNNCC	1 cut(s)	64
BmrFI	CCNGG	2 cut(s)	123, 237
BmsI	GCATC	1 cut(s)	532
BplI	GAGNNNNNCTC	2 cut(s)	149, 181
BpmI	CTGGAG	1 cut(s)	119
BpuMI	CCSGG	1 cut(s)	123
BsaBI	GATNNNNATC	1 cut(s)	453
BsaHI	GRCGYC	2 cut(s)	5, 162
BsaI	GGTCTC	1 cut(s)	568
BsaJI	CCNNGG	1 cut(s)	235
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	1 cut(s)	42
Bse8I	GATNNNNATC	1 cut(s)	453
BseBI	CCWGG	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	235
BseGI	GGATG	2 cut(s)	371, 547
BseJI	GATNNNNATC	1 cut(s)	453
BseLI	CCNNNNNNNGG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	477
BseRI	GAGGAG	3 cut(s)	58, 157, 177
BseX3I	CGGCCG	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	274, 277
BseYI	CCCAGC	1 cut(s)	150
Bsh1236I	CGCG	2 cut(s)	38, 83
Bsh1285I	CGRYCG	1 cut(s)	51
BshFI	GGCC	2 cut(s)	50, 231
BsiEI	CGRYCG	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	42
BsmAI	GTCTC	3 cut(s)	115, 169, 568
BsmBI	CGTCTC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	167
BsnI	GGCC	2 cut(s)	50, 231
Bso31I	GGTCTC	1 cut(s)	568
Bsp143I	GATC	3 cut(s)	346, 454, 591
BspACI	CCGC	6 cut(s)	36, 83, 86, 114, 117, 338
BspANI	GGCC	2 cut(s)	50, 231
BspCNI	CTCAG	1 cut(s)	478
BspFNI	CGCG	2 cut(s)	38, 83
BspLI	GGNNCC	1 cut(s)	64
BspPI	GGATC	1 cut(s)	341
BspTNI	GGTCTC	1 cut(s)	568
BssECI	CCNNGG	1 cut(s)	235
BssMI	GATC	3 cut(s)	346, 454, 591
BssNAI	GTATAC	1 cut(s)	246
BssNI	GRCGYC	2 cut(s)	5, 162
BssSI	CACGAG	1 cut(s)	72
Bst1107I	GTATAC	1 cut(s)	246
Bst2BI	CACGAG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	237
BstACI	GRCGYC	2 cut(s)	5, 162
BstAPI	GCANNNNNTGC	1 cut(s)	271
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	1 cut(s)	486
BstF5I	GGATG	2 cut(s)	371, 547
BstFNI	CGCG	2 cut(s)	38, 83
BstKTI	GATC	3 cut(s)	349, 457, 594
BstMAI	GTCTC	3 cut(s)	115, 169, 568
BstMBI	GATC	3 cut(s)	346, 454, 591
BstMCI	CGRYCG	1 cut(s)	51
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 271
BstNI	CCWGG	1 cut(s)	237
BstNSI	RCATGY	1 cut(s)	272
BstSCI	CCNGG	2 cut(s)	121, 235
BstUI	CGCG	2 cut(s)	38, 83
BstV1I	GCAGC	2 cut(s)	274, 277
BstX2I	RGATCY	2 cut(s)	454, 591
BstYI	RGATCY	2 cut(s)	454, 591
BstZ17I	GTATAC	1 cut(s)	246
BstZI	CGGCCG	1 cut(s)	48
BsuRI	GGCC	2 cut(s)	50, 231
BtgZI	GCGATG	1 cut(s)	53
BtsCI	GGATG	2 cut(s)	371, 547
Cac8I	GCNNGC	1 cut(s)	24
Cfr13I	GGNCC	2 cut(s)	103, 476
CseI	GACGC	2 cut(s)	15, 151
Csp6I	GTAC	1 cut(s)	99
CviAII	CATG	1 cut(s)	269
CviQI	GTAC	1 cut(s)	99
DdeI	CTNAG	1 cut(s)	486
DpnI	GATC	3 cut(s)	348, 456, 593
DpnII	GATC	3 cut(s)	346, 454, 591
DraIII	CACNNNGTG	1 cut(s)	125
DrdI	GACNNNNNNGTC	3 cut(s)	161, 215, 560
DseDI	GACNNNNNNGTC	3 cut(s)	161, 215, 560
EaeI	YGGCCR	1 cut(s)	48
EagI	CGGCCG	1 cut(s)	48
EciI	GGCGGA	1 cut(s)	103
EclXI	CGGCCG	1 cut(s)	48
Eco31I	GGTCTC	1 cut(s)	568
Eco47I	GGWCC	2 cut(s)	103, 476
Eco52I	CGGCCG	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	235
Esp3I	CGTCTC	1 cut(s)	169
FaeI	CATG	1 cut(s)	272
FaiI	YATR	6 cut(s)	246, 270, 354, 408, 502, 504
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	1 cut(s)	268
FauNDI	CATATG	1 cut(s)	502
FblI	GTMKAC	2 cut(s)	8, 245
Fnu4HI	GCNGC	4 cut(s)	84, 117, 263, 266
FokI	GGATG	2 cut(s)	378, 554
Fsp4HI	GCNGC	4 cut(s)	84, 117, 263, 266
FspBI	CTAG	3 cut(s)	107, 276, 595
GluI	GCNGC	4 cut(s)	84, 117, 263, 266
GsaI	CCCAGC	1 cut(s)	154
GsuI	CTGGAG	1 cut(s)	119
HaeIII	GGCC	2 cut(s)	50, 231
HapII	CCGG	1 cut(s)	123
HgaI	GACGC	2 cut(s)	15, 151
Hin1I	GRCGYC	2 cut(s)	5, 162
Hin1II	CATG	1 cut(s)	272
HincII	GTYRAC	1 cut(s)	511
HindII	GTYRAC	1 cut(s)	511
HindIII	AAGCTT	1 cut(s)	436
HinfI	GANTC	3 cut(s)	57, 320, 392
HpaII	CCGG	1 cut(s)	123
Hpy166II	GTNNAC	3 cut(s)	9, 246, 511
Hpy188I	TCNGA	5 cut(s)	56, 62, 147, 487, 553
Hpy188III	TCNNGA	2 cut(s)	72, 136
Hpy8I	GTNNAC	3 cut(s)	9, 246, 511
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	1 cut(s)	511
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 271
HpyF3I	CTNAG	1 cut(s)	486
Hsp92I	GRCGYC	2 cut(s)	5, 162
Hsp92II	CATG	1 cut(s)	272
Kzo9I	GATC	3 cut(s)	346, 454, 591
LmnI	GCTCC	3 cut(s)	62, 147, 423
LpnPI	CCDG	6 cut(s)	136, 136, 149, 222, 249, 552
Lsp1109I	GCAGC	2 cut(s)	274, 277
LweI	GCATC	1 cut(s)	532
MaeI	CTAG	3 cut(s)	107, 276, 595
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	3 cut(s)	348, 456, 593
MboI	GATC	3 cut(s)	346, 454, 591
MflI	RGATCY	2 cut(s)	454, 591
MmeI	TCCRAC	2 cut(s)	34, 426
MseI	TTAA	3 cut(s)	303, 342, 522
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	2 cut(s)	123, 237
MvaI	CCWGG	1 cut(s)	237
MvnI	CGCG	2 cut(s)	38, 83
MwoI	GCNNNNNNNGC	2 cut(s)	89, 271
NciI	CCSGG	1 cut(s)	123
NdeI	CATATG	1 cut(s)	502
NdeII	GATC	3 cut(s)	346, 454, 591
NlaIII	CATG	1 cut(s)	272
NlaIV	GGNNCC	1 cut(s)	64
NspI	RCATGY	1 cut(s)	272
PfeI	GAWTC	3 cut(s)	57, 320, 392
PflFI	GACNNNGTC	1 cut(s)	107
PkrI	GCNGC	4 cut(s)	85, 118, 264, 267
Psp6I	CCWGG	1 cut(s)	235
PspFI	CCCAGC	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	235
PspN4I	GGNNCC	1 cut(s)	64
PspPI	GGNCC	2 cut(s)	103, 476
PsuI	RGATCY	2 cut(s)	454, 591
PsyI	GACNNNGTC	1 cut(s)	107
RsaI	GTAC	1 cut(s)	100
RsaNI	GTAC	1 cut(s)	99
SaqAI	TTAA	3 cut(s)	303, 342, 522
SatI	GCNGC	4 cut(s)	84, 117, 263, 266
Sau3AI	GATC	3 cut(s)	346, 454, 591
Sau96I	GGNCC	2 cut(s)	103, 476
ScrFI	CCNGG	2 cut(s)	123, 237
SetI	ASST	9 cut(s)	47, 108, 145, 152, 428, 440, 481, 522, 564
SfaNI	GCATC	1 cut(s)	532
SinI	GGWCC	2 cut(s)	103, 476
SsiI	CCGC	6 cut(s)	36, 83, 86, 114, 117, 338
SspMI	CTAG	3 cut(s)	107, 276, 595
StyD4I	CCNGG	2 cut(s)	121, 235
TaqI	TCGA	1 cut(s)	395
TauI	GCSGC	2 cut(s)	86, 119
TfiI	GAWTC	3 cut(s)	57, 320, 392
Tru1I	TTAA	3 cut(s)	303, 342, 522
Tru9I	TTAA	3 cut(s)	303, 342, 522
TseI	GCWGC	2 cut(s)	262, 265
TspGWI	ACGGA	1 cut(s)	116
Tth111I	GACNNNGTC	1 cut(s)	107
VpaK11BI	GGWCC	2 cut(s)	103, 476
XceI	RCATGY	1 cut(s)	272
XmiI	GTMKAC	2 cut(s)	8, 245
XspI	CTAG	3 cut(s)	107, 276, 595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.