RLG00000007910

Peroxiredoxin-2F

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0012466
Physical Location & Seq
Forward (+)
22724836 .. 22733379
8544 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007910

Sequence Viewer

Length: 369 bp
ATGAGGTCGGCCGTCGGAATCGGAGCCTCCTCACTAGCCTACATGGCGGTGGCAGTCGGGAAGGACCTAGTCTCCTCCAGAAAGCTCGGAGCTGGGACGAGGGCGTCTCCTCCAAGTTCTCCACCACTCCTCTCAAAGACATTTTCAAAGTCTCTCTTCTCCACTACCTTTCTTCACATCTTATTTCCAACATTTTGGGGTGCGTATACGGGGGTTTGTTTGCAACAACATGTGCCTAGTTACAAGAACAACATTGATAAGTTTAAAGCTAAAGGGATTGATTCTGTGATTTGTGTAGCGGTTAATGATTCCTATGTTTTGAATGGATGGGCAGATAAACTTGAAGCCAAAGATTCGGAAATAAGGTAA

Protein Analysis

123

Amino Acids

13.1

Weight (kDa)

9.52

Isoelectric Point (pI)

50.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Redoxin PF08534 65 - 112 5.9e-08 Redoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012466)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06050
fragaria_vesca FvH4_4g14840
malus_domestica MD13G1185800.v1.1 MD16G1186600.v1.1
prunus_persica Prupe.1G153400_v2.0.a1
pyrus_communis pycom13g16030 pycom16g15640
rosa_chinensis RchiOBHm_Chr4g0417421 RchiOBHm_Chr4g0417491
rosa_laevigata RLG00000007904 RLG00000007910
rosa_multiflora Rmu_sc0004142.1_g000019
rosa_roxburghii Rroxscaffold_5G00361170
rosa_rugosa Rorug04G0148000
rosa_samantha Rh4AG211300 Rh4BG211500 Rh4CG222000 Rh4DG209000
rosa_wichuraiana Rw4G017860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 103
AccI GTMKAC 1 cut(s) 206
AciI CCGC 2 cut(s) 47, 299
AcoI YGGCCR 1 cut(s) 9
AcyI GRCGYC 1 cut(s) 104
AflIII ACRYGT 1 cut(s) 229
AgsI TTSAA 3 cut(s) 147, 322, 344
AluBI AGCT 3 cut(s) 85, 92, 269
AluI AGCT 3 cut(s) 85, 92, 269
Alw26I GTCTC 3 cut(s) 76, 111, 156
AoxI GGCC 1 cut(s) 9
AspS9I GGNCC 1 cut(s) 64
AvaII GGWCC 1 cut(s) 64
BccI CCATC 1 cut(s) 321
BcoDI GTCTC 3 cut(s) 76, 111, 156
BfaI CTAG 3 cut(s) 35, 68, 237
BglI GCCNNNNNGGC 1 cut(s) 44
Bme18I GGWCC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 25
BplI GAGNNNNNCTC 2 cut(s) 91, 123
BpmI CTGGAG 1 cut(s) 61
BsaHI GRCGYC 1 cut(s) 104
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
BseGI GGATG 1 cut(s) 332
BseRI GAGGAG 4 cut(s) 19, 64, 99, 119
BseX3I CGGCCG 1 cut(s) 9
BseYI CCCAGC 1 cut(s) 92
Bsh1285I CGRYCG 1 cut(s) 12
BshFI GGCC 1 cut(s) 11
BsiEI CGRYCG 1 cut(s) 12
BslFI GGGAC 1 cut(s) 109
BsmAI GTCTC 3 cut(s) 76, 111, 156
BsmBI CGTCTC 1 cut(s) 111
BsmFI GGGAC 1 cut(s) 109
BsnI GGCC 1 cut(s) 11
BspACI CCGC 2 cut(s) 47, 299
BspANI GGCC 1 cut(s) 11
BspLI GGNNCC 1 cut(s) 25
BssNAI GTATAC 1 cut(s) 207
BssNI GRCGYC 1 cut(s) 104
Bst1107I GTATAC 1 cut(s) 207
Bst6I CTCTTC 1 cut(s) 161
BstACI GRCGYC 1 cut(s) 104
BstF5I GGATG 1 cut(s) 332
BstMAI GTCTC 3 cut(s) 76, 111, 156
BstMCI CGRYCG 1 cut(s) 12
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNSI RCATGY 1 cut(s) 233
BstXI CCANNNNNNTGG 1 cut(s) 195
BstZ17I GTATAC 1 cut(s) 207
BstZI CGGCCG 1 cut(s) 9
BsuRI GGCC 1 cut(s) 11
BtsCI GGATG 1 cut(s) 332
Cfr13I GGNCC 1 cut(s) 64
CseI GACGC 1 cut(s) 93
CviAII CATG 2 cut(s) 43, 230
CviJI RGCY 7 cut(s) 11, 26, 38, 85, 92, 269, 347
CviKI_1 RGCY 7 cut(s) 11, 26, 38, 85, 92, 269, 347
DraI TTTAAA 1 cut(s) 265
DrdI GACNNNNNNGTC 1 cut(s) 103
DseDI GACNNNNNNGTC 1 cut(s) 103
EaeI YGGCCR 1 cut(s) 9
EagI CGGCCG 1 cut(s) 9
Eam1104I CTCTTC 1 cut(s) 161
EarI CTCTTC 1 cut(s) 161
EclXI CGGCCG 1 cut(s) 9
Eco47I GGWCC 1 cut(s) 64
Eco52I CGGCCG 1 cut(s) 9
EcoO109I RGGNCCY 1 cut(s) 64
Esp3I CGTCTC 1 cut(s) 111
FaeI CATG 2 cut(s) 46, 233
FaiI YATR 4 cut(s) 44, 207, 231, 315
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FaqI GGGAC 1 cut(s) 109
FatI CATG 2 cut(s) 42, 229
FblI GTMKAC 1 cut(s) 206
FokI GGATG 1 cut(s) 339
FspBI CTAG 3 cut(s) 35, 68, 237
GsaI CCCAGC 1 cut(s) 96
GsuI CTGGAG 1 cut(s) 61
HaeIII GGCC 1 cut(s) 11
HgaI GACGC 1 cut(s) 93
Hin1I GRCGYC 1 cut(s) 104
Hin1II CATG 2 cut(s) 46, 233
HinfI GANTC 4 cut(s) 18, 281, 308, 353
Hpy166II GTNNAC 1 cut(s) 207
Hpy188I TCNGA 4 cut(s) 17, 23, 89, 358
Hpy188III TCNNGA 2 cut(s) 58, 78
Hpy8I GTNNAC 1 cut(s) 207
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 55
HpyCH4V TGCA 1 cut(s) 223
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
Hsp92I GRCGYC 1 cut(s) 104
Hsp92II CATG 2 cut(s) 46, 233
LmnI GCTCC 2 cut(s) 23, 89
LpnPI CCDG 2 cut(s) 78, 91
MaeI CTAG 3 cut(s) 35, 68, 237
MaeIII GTNAC 1 cut(s) 239
MboII GAAGA 2 cut(s) 148, 164
MmeI TCCRAC 1 cut(s) 212
MnlI CCTC 6 cut(s) 37, 40, 85, 93, 120, 140
MseI TTAA 2 cut(s) 264, 303
MslI CAYNNNNRTG 1 cut(s) 47
MwoI GCNNNNNNNGC 1 cut(s) 44
NlaIII CATG 2 cut(s) 46, 233
NlaIV GGNNCC 1 cut(s) 25
NspI RCATGY 1 cut(s) 233
PciI ACATGT 1 cut(s) 229
PfeI GAWTC 4 cut(s) 18, 281, 308, 353
PflFI GACNNNGTC 1 cut(s) 68
PpuMI RGGWCCY 1 cut(s) 64
PscI ACATGT 1 cut(s) 229
Psp5II RGGWCCY 1 cut(s) 64
PspFI CCCAGC 1 cut(s) 92
PspN4I GGNNCC 1 cut(s) 25
PspPI GGNCC 1 cut(s) 64
PspPPI RGGWCCY 1 cut(s) 64
PsyI GACNNNGTC 1 cut(s) 68
RseI CAYNNNNRTG 1 cut(s) 47
SaqAI TTAA 2 cut(s) 264, 303
Sau96I GGNCC 1 cut(s) 64
SetI ASST 7 cut(s) 8, 69, 87, 94, 170, 271, 368
SinI GGWCC 1 cut(s) 64
SmiMI CAYNNNNRTG 1 cut(s) 47
SsiI CCGC 2 cut(s) 47, 299
SspMI CTAG 3 cut(s) 35, 68, 237
TfiI GAWTC 4 cut(s) 18, 281, 308, 353
Tru1I TTAA 2 cut(s) 264, 303
Tru9I TTAA 2 cut(s) 264, 303
Tth111I GACNNNGTC 1 cut(s) 68
VpaK11BI GGWCC 1 cut(s) 64
XceI RCATGY 1 cut(s) 233
XmiI GTMKAC 1 cut(s) 206
XspI CTAG 3 cut(s) 35, 68, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.