Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0012466

Physical Location & Seq

Genomic Coordinates Forward (+)

18480046 .. 18482782

Gene Structure 2737 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g14840.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCGTCTTCACTCCTGAAGCGAGCATCCTACTCCGCCATGAAATCGGCCGTCGGAGCCTCCCCACGAGCCTACGCGGCGGTCGCAGTCGGGACGGACCTAGTCTCCGCCGCACCCGATGTCTCCCTCCAGAAAGCTCGGAGCTGGGACGAGGGCGTCTCCTCTAAATTCTCCACCACTCCTCTCAAAGACCTTTTCAAGGACAAGAAAGTCGTCATCTTCGGCCTCCCTGGTGCGTACACTGGGGTTTGTTCGCAGCAGCATGTGCCTAGTTACAAGAACAACATTGACAAGTTTAAGGCTAAAGGGATTGATTCTGTGATTTGTGTTGCGGTTAATGATCCCTTTGTTTTGAATGGATGGGCAGATAAACTTGAAGCCAAAGACTCGATCGAGTTCTATGGGGACTTTGATGGGAGCTTCCACAAAAGCTTGGAGTTGGATAAAGATCTCTCTGTTGCTTTGCTTGGACCTCGCTCTCAGAGATGGTCGGCATATGTGGTTGACGGGAAGGTTAAAGTTCTAAATGTCGAGGAAGCCCCATCAGACTTCAAGGTCTCTGGTGGAGATGTCATTTTGGGTCAGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010035 GO:0010038 GO:0016209 GO:0016491 GO:0016684 GO:0031974 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0051716 GO:0055114 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Redoxin

Protein Analysis

197

Amino Acids

21.03

Weight (kDa)

7.69

Isoelectric Point (pI)

33.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Redoxin	PF08534	37 - 187	1.4e-21	Redoxin
AhpC-TSA	PF00578	37 - 147	5.8e-09	AhpC/TSA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06050
fragaria_vesca	FvH4_4g14840
malus_domestica	MD13G1185800.v1.1 MD16G1186600.v1.1
prunus_persica	Prupe.1G153400_v2.0.a1
pyrus_communis	pycom13g16030 pycom16g15640
rosa_chinensis	RchiOBHm_Chr4g0417421 RchiOBHm_Chr4g0417491
rosa_laevigata	RLG00000007904 RLG00000007910
rosa_multiflora	Rmu_sc0004142.1_g000019
rosa_roxburghii	Rroxscaffold_5G00361170
rosa_rugosa	Rorug04G0148000
rosa_samantha	Rh4AG211300 Rh4BG211500 Rh4CG222000 Rh4DG209000
rosa_wichuraiana	Rw4G017860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	155, 209, 554
AccII	CGCG	1 cut(s)	77
AciI	CCGC	6 cut(s)	36, 77, 80, 108, 111, 332
AclWI	GGATC	1 cut(s)	335
AcoI	YGGCCR	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	167
AcuI	CTGAAG	1 cut(s)	38
AcyI	GRCGYC	2 cut(s)	5, 156
AfaI	GTAC	1 cut(s)	239
AfiI	CCNNNNNNNGG	1 cut(s)	199
AgsI	TTSAA	4 cut(s)	199, 355, 377, 553
AjnI	CCWGG	1 cut(s)	229
AluBI	AGCT	4 cut(s)	137, 144, 420, 432
AluI	AGCT	4 cut(s)	137, 144, 420, 432
Alw26I	GTCTC	4 cut(s)	109, 127, 163, 562
AlwI	GGATC	1 cut(s)	335
AoxI	GGCC	2 cut(s)	48, 223
ApeKI	GCWGC	2 cut(s)	256, 259
ApoI	RAATTY	1 cut(s)	167
AspS9I	GGNCC	2 cut(s)	97, 470
AvaII	GGWCC	2 cut(s)	97, 470
BauI	CACGAG	1 cut(s)	66
BbvI	GCAGC	2 cut(s)	268, 271
BccI	CCATC	4 cut(s)	354, 407, 480, 550
BceAI	ACGGC	1 cut(s)	35
BciT130I	CCWGG	1 cut(s)	231
BcoDI	GTCTC	4 cut(s)	109, 127, 163, 562
BfaI	CTAG	3 cut(s)	101, 270, 589
BglI	GCCNNNNNGGC	1 cut(s)	77
BglII	AGATCT	2 cut(s)	448, 585
BisI	GCNGC	4 cut(s)	78, 111, 257, 260
BlsI	GCNGC	4 cut(s)	79, 112, 258, 261
Bme1390I	CCNGG	1 cut(s)	231
Bme18I	GGWCC	2 cut(s)	97, 470
BmgT120I	GGNCC	2 cut(s)	97, 470
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	1 cut(s)	231
BmrI	ACTGGG	1 cut(s)	252
BmsI	GCATC	1 cut(s)	35
BmuI	ACTGGG	1 cut(s)	252
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
BpmI	CTGGAG	1 cut(s)	113
BsaBI	GATNNNNATC	1 cut(s)	447
BsaHI	GRCGYC	2 cut(s)	5, 156
BsaI	GGTCTC	1 cut(s)	562
BsaJI	CCNNGG	1 cut(s)	229
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse1I	ACTGG	1 cut(s)	247
Bse8I	GATNNNNATC	1 cut(s)	447
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	229
BseGI	GGATG	2 cut(s)	26, 365
BseJI	GATNNNNATC	1 cut(s)	447
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMII	CTCAG	1 cut(s)	494
BseNI	ACTGG	1 cut(s)	247
BseRI	GAGGAG	2 cut(s)	151, 171
BseX3I	CGGCCG	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	268, 271
BseYI	CCCAGC	1 cut(s)	144
Bsh1236I	CGCG	1 cut(s)	77
Bsh1285I	CGRYCG	3 cut(s)	51, 84, 393
BshFI	GGCC	2 cut(s)	50, 225
BsiEI	CGRYCG	3 cut(s)	51, 84, 393
BslFI	GGGAC	3 cut(s)	106, 161, 419
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmAI	GTCTC	4 cut(s)	109, 127, 163, 562
BsmBI	CGTCTC	1 cut(s)	163
BsmFI	GGGAC	3 cut(s)	106, 161, 419
BsnI	GGCC	2 cut(s)	50, 225
Bso31I	GGTCTC	1 cut(s)	562
Bsp143I	GATC	4 cut(s)	340, 390, 448, 585
BspACI	CCGC	6 cut(s)	36, 77, 80, 108, 111, 332
BspANI	GGCC	2 cut(s)	50, 225
BspCNI	CTCAG	1 cut(s)	493
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	1 cut(s)	58
BspPI	GGATC	1 cut(s)	335
BspTNI	GGTCTC	1 cut(s)	562
BsrI	ACTGG	1 cut(s)	247
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	4 cut(s)	340, 390, 448, 585
BssNI	GRCGYC	2 cut(s)	5, 156
BssSI	CACGAG	1 cut(s)	66
Bst2BI	CACGAG	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	231
BstACI	GRCGYC	2 cut(s)	5, 156
BstAPI	GCANNNNNTGC	1 cut(s)	265
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	1 cut(s)	480
BstENI	CCTNNNNNAGG	1 cut(s)	197
BstF5I	GGATG	2 cut(s)	26, 365
BstFNI	CGCG	1 cut(s)	77
BstKTI	GATC	4 cut(s)	343, 393, 451, 588
BstMAI	GTCTC	4 cut(s)	109, 127, 163, 562
BstMBI	GATC	4 cut(s)	340, 390, 448, 585
BstMCI	CGRYCG	3 cut(s)	51, 84, 393
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 77, 83, 265
BstNI	CCWGG	1 cut(s)	231
BstNSI	RCATGY	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	229
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	2 cut(s)	268, 271
BstX2I	RGATCY	2 cut(s)	448, 585
BstYI	RGATCY	2 cut(s)	448, 585
BstZI	CGGCCG	1 cut(s)	48
BsuRI	GGCC	2 cut(s)	50, 225
BtsCI	GGATG	2 cut(s)	26, 365
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	1 cut(s)	24
Cfr13I	GGNCC	2 cut(s)	97, 470
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	2 cut(s)	40, 263
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	1 cut(s)	480
DpnI	GATC	4 cut(s)	342, 392, 450, 587
DpnII	GATC	4 cut(s)	340, 390, 448, 585
DrdI	GACNNNNNNGTC	3 cut(s)	155, 209, 554
DseDI	GACNNNNNNGTC	3 cut(s)	155, 209, 554
EaeI	YGGCCR	1 cut(s)	48
EagI	CGGCCG	1 cut(s)	48
EciI	GGCGGA	2 cut(s)	25, 97
EclXI	CGGCCG	1 cut(s)	48
Eco31I	GGTCTC	1 cut(s)	562
Eco47I	GGWCC	2 cut(s)	97, 470
Eco52I	CGGCCG	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	38
EcoNI	CCTNNNNNAGG	1 cut(s)	197
EcoRII	CCWGG	1 cut(s)	229
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	2 cut(s)	43, 266
FaiI	YATR	5 cut(s)	41, 264, 402, 496, 498
FaqI	GGGAC	3 cut(s)	106, 161, 419
FatI	CATG	2 cut(s)	39, 262
FauNDI	CATATG	1 cut(s)	496
Fnu4HI	GCNGC	4 cut(s)	78, 111, 257, 260
FokI	GGATG	2 cut(s)	13, 372
Fsp4HI	GCNGC	4 cut(s)	78, 111, 257, 260
FspBI	CTAG	3 cut(s)	101, 270, 589
GluI	GCNGC	4 cut(s)	78, 111, 257, 260
GsaI	CCCAGC	1 cut(s)	148
GsuI	CTGGAG	1 cut(s)	113
HaeIII	GGCC	2 cut(s)	50, 225
HgaI	GACGC	1 cut(s)	145
Hin1I	GRCGYC	2 cut(s)	5, 156
Hin1II	CATG	2 cut(s)	43, 266
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HindIII	AAGCTT	1 cut(s)	430
HinfI	GANTC	2 cut(s)	314, 386
Hpy166II	GTNNAC	2 cut(s)	240, 505
Hpy188I	TCNGA	5 cut(s)	56, 141, 483, 547, 585
Hpy188III	TCNNGA	3 cut(s)	16, 91, 130
Hpy8I	GTNNAC	2 cut(s)	240, 505
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	1 cut(s)	505
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 77, 83, 265
HpyF3I	CTNAG	1 cut(s)	480
Hsp92I	GRCGYC	2 cut(s)	5, 156
Hsp92II	CATG	2 cut(s)	43, 266
Kzo9I	GATC	4 cut(s)	340, 390, 448, 585
LmnI	GCTCC	3 cut(s)	56, 141, 417
LpnPI	CCDG	7 cut(s)	29, 130, 143, 216, 228, 243, 546
Lsp1109I	GCAGC	2 cut(s)	268, 271
LweI	GCATC	1 cut(s)	35
MaeI	CTAG	3 cut(s)	101, 270, 589
MaeIII	GTNAC	1 cut(s)	272
MalI	GATC	4 cut(s)	342, 392, 450, 587
MboI	GATC	4 cut(s)	340, 390, 448, 585
MboII	GAAGA	1 cut(s)	211
MflI	RGATCY	2 cut(s)	448, 585
MluCI	AATT	1 cut(s)	167
MlyI	GAGTC	1 cut(s)	380
MmeI	TCCRAC	2 cut(s)	34, 420
MnlI	CCTC	8 cut(s)	70, 137, 145, 172, 192, 236, 483, 526
MseI	TTAA	3 cut(s)	297, 336, 516
MspR9I	CCNGG	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	231
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	4 cut(s)	56, 77, 83, 265
NdeI	CATATG	1 cut(s)	496
NdeII	GATC	4 cut(s)	340, 390, 448, 585
NlaIII	CATG	2 cut(s)	43, 266
NlaIV	GGNNCC	1 cut(s)	58
NspI	RCATGY	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	314
PflFI	GACNNNGTC	1 cut(s)	101
PkrI	GCNGC	4 cut(s)	79, 112, 258, 261
Ple19I	CGATCG	1 cut(s)	393
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
Psp6I	CCWGG	1 cut(s)	229
PspFI	CCCAGC	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	58
PspPI	GGNCC	2 cut(s)	97, 470
PsuI	RGATCY	2 cut(s)	448, 585
PsyI	GACNNNGTC	1 cut(s)	101
PvuI	CGATCG	1 cut(s)	393
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SaqAI	TTAA	3 cut(s)	297, 336, 516
SatI	GCNGC	4 cut(s)	78, 111, 257, 260
Sau3AI	GATC	4 cut(s)	340, 390, 448, 585
Sau96I	GGNCC	2 cut(s)	97, 470
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	1 cut(s)	231
SetI	ASST	9 cut(s)	102, 139, 146, 195, 422, 434, 475, 516, 558
SfaNI	GCATC	1 cut(s)	35
SinI	GGWCC	2 cut(s)	97, 470
Sse9I	AATT	1 cut(s)	167
SsiI	CCGC	6 cut(s)	36, 77, 80, 108, 111, 332
SspMI	CTAG	3 cut(s)	101, 270, 589
StyD4I	CCNGG	1 cut(s)	229
TaqI	TCGA	3 cut(s)	389, 393, 531
TasI	AATT	1 cut(s)	167
TauI	GCSGC	2 cut(s)	80, 113
TfiI	GAWTC	1 cut(s)	314
Tru1I	TTAA	3 cut(s)	297, 336, 516
Tru9I	TTAA	3 cut(s)	297, 336, 516
TscAI	CASTG	1 cut(s)	247
TseI	GCWGC	2 cut(s)	256, 259
TspDTI	ATGAA	1 cut(s)	56
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	1 cut(s)	247
Tth111I	GACNNNGTC	1 cut(s)	101
VpaK11BI	GGWCC	2 cut(s)	97, 470
XagI	CCTNNNNNAGG	1 cut(s)	197
XapI	RAATTY	1 cut(s)	167
XceI	RCATGY	1 cut(s)	266
XspI	CTAG	3 cut(s)	101, 270, 589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.