Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012466

Physical Location & Seq

Genomic Coordinates Forward (+)

12093925 .. 12096093

Gene Structure 2169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G153400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGCGTCTACACTTCTGAAGCGAGCAAGCTACTCTGCAATGAAATCAGTGGCCGGAGGTTTCCAAATGGGAGCTCAATCAAGAGCCTACGCGGCGGTTGCAGCCGGAACCGACATAGTCTCGGCCGCCCCTAATGTTTCCCTCCAGAAAGCTCGGACCTGGGACGAAGGCGTCTCCTCGAATTTCGCCACCACTCCTCTCAAAGACATTTTCAAGGACAAGAAAGTCGTCATCTTTGGCCTCCCTGGTGCCTTCACGGGCGTTTGTTCTCAGCAGCATGTGCCTAGTTACAAGAAGCAAATTGATAAGTTTAAGGCTAAAGGGATCGATTCTGTGATTTGTGTAGCTGTTAATGATCCATATGTTATGAATGGCTGGGCAAACAAACTTGAAGCCACAGATGCTATTGAGTTCTATGGGGACTTTGATGGGAGCTTCCACAAAAGCTTGGAATTGGATAAAGATCTCTCTGGTGCTTTGCTTGGACCTCGCTCTCAAAGATGGTCGGCATATGTGGTTGACGGGAAGGTTAAAGTTCTAAATGTGGAGGAAGTCCCATCAGACTTCAAGGTTTCTGGAGGGGATGTTATTTTGGGACAGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009636 GO:0009987 GO:0010035 GO:0010038 GO:0016209 GO:0016491 GO:0016684 GO:0031974 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0051716 GO:0055114 GO:0070013 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Redoxin

Protein Analysis

202

Amino Acids

21.54

Weight (kDa)

8.43

Isoelectric Point (pI)

30.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012466)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06050
fragaria_vesca	FvH4_4g14840
malus_domestica	MD13G1185800.v1.1 MD16G1186600.v1.1
prunus_persica	Prupe.1G153400_v2.0.a1
pyrus_communis	pycom13g16030 pycom16g15640
rosa_chinensis	RchiOBHm_Chr4g0417421 RchiOBHm_Chr4g0417491
rosa_laevigata	RLG00000007904 RLG00000007910
rosa_multiflora	Rmu_sc0004142.1_g000019
rosa_roxburghii	Rroxscaffold_5G00361170
rosa_rugosa	Rorug04G0148000
rosa_samantha	Rh4AG211300 Rh4BG211500 Rh4CG222000 Rh4DG209000
rosa_wichuraiana	Rw4G017860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	170, 224
AccB1I	GGYRCC	1 cut(s)	248
AccI	GTMKAC	1 cut(s)	8
AccII	CGCG	1 cut(s)	92
AciI	CCGC	3 cut(s)	92, 95, 126
AclWI	GGATC	2 cut(s)	332, 350
AcoI	YGGCCR	2 cut(s)	51, 123
AcsI	RAATTY	1 cut(s)	181
AcuI	CTGAAG	1 cut(s)	38
AcyI	GRCGYC	2 cut(s)	5, 171
AgsI	TTSAA	3 cut(s)	214, 392, 568
AjnI	CCWGG	2 cut(s)	158, 244
AluBI	AGCT	6 cut(s)	30, 74, 152, 347, 435, 447
AluI	AGCT	6 cut(s)	30, 74, 152, 347, 435, 447
Alw21I	GWGCWC	1 cut(s)	76
Alw26I	GTCTC	2 cut(s)	124, 178
AlwI	GGATC	2 cut(s)	332, 350
AoxI	GGCC	3 cut(s)	51, 123, 238
ApeKI	GCWGC	2 cut(s)	101, 274
ApoI	RAATTY	1 cut(s)	181
AspS9I	GGNCC	2 cut(s)	156, 485
AvaII	GGWCC	2 cut(s)	156, 485
BanI	GGYRCC	1 cut(s)	248
BanII	GRGCYC	1 cut(s)	76
Bbv12I	GWGCWC	1 cut(s)	76
BbvI	GCAGC	2 cut(s)	113, 286
BccI	CCATC	3 cut(s)	422, 495, 565
BciT130I	CCWGG	2 cut(s)	160, 246
BcoDI	GTCTC	2 cut(s)	124, 178
BfaI	CTAG	2 cut(s)	285, 604
BglI	GCCNNNNNGGC	1 cut(s)	92
BglII	AGATCT	2 cut(s)	463, 600
BisI	GCNGC	4 cut(s)	93, 102, 126, 275
BlsI	GCNGC	4 cut(s)	94, 103, 127, 276
Bme1390I	CCNGG	2 cut(s)	160, 246
Bme18I	GGWCC	2 cut(s)	156, 485
BmgT120I	GGNCC	2 cut(s)	156, 485
BmiI	GGNNCC	2 cut(s)	109, 250
BmrFI	CCNGG	2 cut(s)	160, 246
BmsI	GCATC	1 cut(s)	391
BpmI	CTGGAG	2 cut(s)	128, 597
Bsa29I	ATCGAT	1 cut(s)	327
BsaBI	GATNNNNATC	1 cut(s)	462
BsaHI	GRCGYC	2 cut(s)	5, 171
BsaJI	CCNNGG	2 cut(s)	159, 244
BsaXI	ACNNNNNCTCC	2 cut(s)	570, 600
Bse3DI	GCAATG	1 cut(s)	45
Bse8I	GATNNNNATC	1 cut(s)	462
BseBI	CCWGG	2 cut(s)	160, 246
BseCI	ATCGAT	1 cut(s)	327
BseDI	CCNNGG	2 cut(s)	159, 244
BseGI	GGATG	1 cut(s)	589
BseJI	GATNNNNATC	1 cut(s)	462
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	284
BseRI	GAGGAG	2 cut(s)	166, 186
BseX3I	CGGCCG	1 cut(s)	123
BseXI	GCAGC	2 cut(s)	113, 286
BseYI	CCCAGC	1 cut(s)	375
Bsh1236I	CGCG	1 cut(s)	92
Bsh1285I	CGRYCG	1 cut(s)	126
BshFI	GGCC	3 cut(s)	53, 125, 240
BshNI	GGYRCC	1 cut(s)	248
BshVI	ATCGAT	1 cut(s)	327
BsiEI	CGRYCG	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	76
BsiSI	CCGG	2 cut(s)	54, 105
BslFI	GGGAC	3 cut(s)	176, 434, 539
BsmAI	GTCTC	2 cut(s)	124, 178
BsmBI	CGTCTC	1 cut(s)	178
BsmFI	GGGAC	3 cut(s)	176, 434, 539
BsnI	GGCC	3 cut(s)	53, 125, 240
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp143I	GATC	4 cut(s)	324, 355, 463, 600
BspACI	CCGC	3 cut(s)	92, 95, 126
BspANI	GGCC	3 cut(s)	53, 125, 240
BspCNI	CTCAG	1 cut(s)	283
BspDI	ATCGAT	1 cut(s)	327
BspFNI	CGCG	1 cut(s)	92
BspLI	GGNNCC	2 cut(s)	109, 250
BspPI	GGATC	2 cut(s)	332, 350
BspT107I	GGYRCC	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	45
BssECI	CCNNGG	2 cut(s)	159, 244
BssMI	GATC	4 cut(s)	324, 355, 463, 600
BssNI	GRCGYC	2 cut(s)	5, 171
Bst2UI	CCWGG	2 cut(s)	160, 246
BstACI	GRCGYC	2 cut(s)	5, 171
BstAPI	GCANNNNNTGC	1 cut(s)	280
BstC8I	GCNNGC	2 cut(s)	24, 28
BstDEI	CTNAG	1 cut(s)	270
BstF5I	GGATG	1 cut(s)	589
BstFNI	CGCG	1 cut(s)	92
BstKTI	GATC	4 cut(s)	327, 358, 466, 603
BstMAI	GTCTC	2 cut(s)	124, 178
BstMBI	GATC	4 cut(s)	324, 355, 463, 600
BstMCI	CGRYCG	1 cut(s)	126
BstMWI	GCNNNNNNNGC	5 cut(s)	92, 98, 101, 280, 401
BstNI	CCWGG	2 cut(s)	160, 246
BstNSI	RCATGY	1 cut(s)	281
BstSCI	CCNGG	2 cut(s)	158, 244
BstUI	CGCG	1 cut(s)	92
BstV1I	GCAGC	2 cut(s)	113, 286
BstX2I	RGATCY	2 cut(s)	463, 600
BstYI	RGATCY	2 cut(s)	463, 600
BstZI	CGGCCG	1 cut(s)	123
Bsu15I	ATCGAT	1 cut(s)	327
BsuRI	GGCC	3 cut(s)	53, 125, 240
BsuTUI	ATCGAT	1 cut(s)	327
BtsCI	GGATG	1 cut(s)	589
BtsIMutI	CAGTG	1 cut(s)	54
Cac8I	GCNNGC	2 cut(s)	24, 28
Cfr13I	GGNCC	2 cut(s)	156, 485
ClaI	ATCGAT	1 cut(s)	327
CseI	GACGC	1 cut(s)	160
CviAII	CATG	1 cut(s)	278
DdeI	CTNAG	1 cut(s)	270
DpnI	GATC	4 cut(s)	326, 357, 465, 602
DpnII	GATC	4 cut(s)	324, 355, 463, 600
DrdI	GACNNNNNNGTC	2 cut(s)	170, 224
DseDI	GACNNNNNNGTC	2 cut(s)	170, 224
EaeI	YGGCCR	2 cut(s)	51, 123
EagI	CGGCCG	1 cut(s)	123
Ecl136II	GAGCTC	1 cut(s)	74
EclXI	CGGCCG	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	76
Eco47I	GGWCC	2 cut(s)	156, 485
Eco52I	CGGCCG	1 cut(s)	123
Eco53kI	GAGCTC	1 cut(s)	74
Eco57I	CTGAAG	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	74
EcoRII	CCWGG	2 cut(s)	158, 244
EcoT38I	GRGCYC	1 cut(s)	76
Esp3I	CGTCTC	1 cut(s)	178
FaeI	CATG	1 cut(s)	281
FaiI	YATR	8 cut(s)	116, 279, 361, 363, 368, 417, 511, 513
FaqI	GGGAC	3 cut(s)	176, 434, 539
FatI	CATG	1 cut(s)	277
FauNDI	CATATG	2 cut(s)	361, 511
FblI	GTMKAC	1 cut(s)	8
Fnu4HI	GCNGC	4 cut(s)	93, 102, 126, 275
FokI	GGATG	1 cut(s)	596
FriOI	GRGCYC	1 cut(s)	76
Fsp4HI	GCNGC	4 cut(s)	93, 102, 126, 275
FspBI	CTAG	2 cut(s)	285, 604
GluI	GCNGC	4 cut(s)	93, 102, 126, 275
GsaI	CCCAGC	1 cut(s)	379
GsuI	CTGGAG	2 cut(s)	128, 597
HaeIII	GGCC	3 cut(s)	53, 125, 240
HapII	CCGG	2 cut(s)	54, 105
HgaI	GACGC	1 cut(s)	160
Hin1I	GRCGYC	2 cut(s)	5, 171
Hin1II	CATG	1 cut(s)	281
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HindIII	AAGCTT	1 cut(s)	445
HinfI	GANTC	1 cut(s)	329
HpaII	CCGG	2 cut(s)	54, 105
Hpy166II	GTNNAC	2 cut(s)	9, 520
Hpy188I	TCNGA	3 cut(s)	18, 156, 562
Hpy188III	TCNNGA	3 cut(s)	81, 145, 576
Hpy8I	GTNNAC	2 cut(s)	9, 520
HpyAV	CCTTC	3 cut(s)	161, 262, 520
HpyCH4V	TGCA	2 cut(s)	38, 101
HpyF10VI	GCNNNNNNNGC	5 cut(s)	92, 98, 101, 280, 401
HpyF3I	CTNAG	1 cut(s)	270
Hsp92I	GRCGYC	2 cut(s)	5, 171
Hsp92II	CATG	1 cut(s)	281
Kzo9I	GATC	4 cut(s)	324, 355, 463, 600
LmnI	GCTCC	2 cut(s)	71, 432
Lsp1109I	GCAGC	2 cut(s)	113, 286
LweI	GCATC	1 cut(s)	391
MaeI	CTAG	2 cut(s)	285, 604
MaeIII	GTNAC	1 cut(s)	287
MalI	GATC	4 cut(s)	326, 357, 465, 602
MboI	GATC	4 cut(s)	324, 355, 463, 600
MflI	RGATCY	2 cut(s)	463, 600
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	3 cut(s)	181, 300, 452
MnlI	CCTC	8 cut(s)	50, 152, 187, 207, 251, 498, 541, 572
MseI	TTAA	3 cut(s)	312, 351, 531
MspI	CCGG	2 cut(s)	54, 105
MspR9I	CCNGG	2 cut(s)	160, 246
MvaI	CCWGG	2 cut(s)	160, 246
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	5 cut(s)	92, 98, 101, 280, 401
NdeI	CATATG	2 cut(s)	361, 511
NdeII	GATC	4 cut(s)	324, 355, 463, 600
NlaIII	CATG	1 cut(s)	281
NlaIV	GGNNCC	2 cut(s)	109, 250
NmeAIII	GCCGAG	1 cut(s)	101
NspI	RCATGY	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	329
PflFI	GACNNNGTC	1 cut(s)	116
PkrI	GCNGC	4 cut(s)	94, 103, 127, 276
Psp124BI	GAGCTC	1 cut(s)	76
Psp6I	CCWGG	2 cut(s)	158, 244
PspFI	CCCAGC	1 cut(s)	375
PspGI	CCWGG	2 cut(s)	158, 244
PspN4I	GGNNCC	2 cut(s)	109, 250
PspPI	GGNCC	2 cut(s)	156, 485
PsuI	RGATCY	2 cut(s)	463, 600
PsyI	GACNNNGTC	1 cut(s)	116
SacI	GAGCTC	1 cut(s)	76
SaqAI	TTAA	3 cut(s)	312, 351, 531
SatI	GCNGC	4 cut(s)	93, 102, 126, 275
Sau3AI	GATC	4 cut(s)	324, 355, 463, 600
Sau96I	GGNCC	2 cut(s)	156, 485
ScrFI	CCNGG	2 cut(s)	160, 246
SduI	GDGCHC	1 cut(s)	76
SfaNI	GCATC	1 cut(s)	391
SinI	GGWCC	2 cut(s)	156, 485
Sse9I	AATT	3 cut(s)	181, 300, 452
SsiI	CCGC	3 cut(s)	92, 95, 126
SspMI	CTAG	2 cut(s)	285, 604
SstI	GAGCTC	1 cut(s)	76
StyD4I	CCNGG	2 cut(s)	158, 244
TaqI	TCGA	2 cut(s)	179, 327
TasI	AATT	3 cut(s)	181, 300, 452
TauI	GCSGC	2 cut(s)	95, 128
TfiI	GAWTC	1 cut(s)	329
Tru1I	TTAA	3 cut(s)	312, 351, 531
Tru9I	TTAA	3 cut(s)	312, 351, 531
TscAI	CASTG	1 cut(s)	54
TseI	GCWGC	2 cut(s)	101, 274
TspDTI	ATGAA	2 cut(s)	56, 383
TspRI	CASTG	1 cut(s)	54
Tth111I	GACNNNGTC	1 cut(s)	116
VpaK11BI	GGWCC	2 cut(s)	156, 485
XapI	RAATTY	1 cut(s)	181
XceI	RCATGY	1 cut(s)	281
XmiI	GTMKAC	1 cut(s)	8
XspI	CTAG	2 cut(s)	285, 604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.