pycom13g16030

Peroxiredoxin-2F

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0012466
Physical Location & Seq
Forward (+)
11810623 .. 11811966
1344 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g16030.4

Sequence Viewer

Length: 606 bp
ATGGCGTCCACACTTCTGAAGCGAACGAGCTTCTCCGCAATGAAATCAGTGGTCGGAGGCTTCCAAAGCGGAGCTCAATCAAGAGCCTACGCGGCGGCTGCAGTCGGGACCGACTTAGTCTCCGCCGCACCCAATGTTTCCCTCCAGAAAGCTCGCACCTGGGACGATGGTGTCTCCTCCAACTTCGCCGCCACTCCTCTCAAAGACATTTTCAAGGGCAAGAAAGTCGTCATCTTTGGGCTCCCTGGTGCCTTCACCGGTGTTTGTTCTGCGCAACACGTGCCTAGTTACAAGAACCAAATTGATAAGTTTAAGGCCAAAGGGGTTGACTCTGTGATTTGTGTAGCTGTGAATGATCCATATGTTATGAATGGCTGGGCAAACAACCTCGAAGCCAAAGAAGCTATTGAGTTCTATGGGGACTTCGATGGGAGCTTCCACAAAAGCTTGGAATTGGATAAAGATCTCAGTGGTGCTTTGCTTGGACACCGCTCTCAAAGATGGTCAGCTTATGTGGTTGACGGGAAGGTGAAAACTCTAAATGTGGAGGAAGTCCCATCAGACTTCAAGGTTTCTGGCGGGGATGTAATTTTGGGACAGATCTAG

Protein Analysis

202

Amino Acids

21.42

Weight (kDa)

8.45

Isoelectric Point (pI)

27.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012466)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06050
fragaria_vesca FvH4_4g14840
malus_domestica MD13G1185800.v1.1 MD16G1186600.v1.1
prunus_persica Prupe.1G153400_v2.0.a1
pyrus_communis pycom13g16030 pycom16g15640
rosa_chinensis RchiOBHm_Chr4g0417421 RchiOBHm_Chr4g0417491
rosa_laevigata RLG00000007904 RLG00000007910
rosa_multiflora Rmu_sc0004142.1_g000019
rosa_roxburghii Rroxscaffold_5G00361170
rosa_rugosa Rorug04G0148000
rosa_samantha Rh4AG211300 Rh4BG211500 Rh4CG222000 Rh4DG209000
rosa_wichuraiana Rw4G017860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 170
Acc16I TGCGCA 1 cut(s) 273
AccB1I GGYRCC 1 cut(s) 248
AccBSI CCGCTC 1 cut(s) 492
AccII CGCG 1 cut(s) 92
AciI CCGC 9 cut(s) 36, 69, 92, 95, 123, 126, 189, 490, 579
AclWI GGATC 1 cut(s) 350
AcuI CTGAAG 1 cut(s) 38
AcvI CACGTG 1 cut(s) 280
AcyI GRCGYC 1 cut(s) 5
AflIII ACRYGT 1 cut(s) 277
AgeI ACCGGT 1 cut(s) 257
AgsI TTSAA 2 cut(s) 214, 568
AjnI CCWGG 2 cut(s) 158, 244
AluBI AGCT 8 cut(s) 30, 74, 152, 347, 404, 435, 447, 509
AluI AGCT 8 cut(s) 30, 74, 152, 347, 404, 435, 447, 509
Alw21I GWGCWC 1 cut(s) 76
Alw26I GTCTC 2 cut(s) 124, 178
AlwI GGATC 1 cut(s) 350
AoxI GGCC 1 cut(s) 315
ApeKI GCWGC 1 cut(s) 98
AsiGI ACCGGT 1 cut(s) 257
AspLEI GCGC 1 cut(s) 274
AspS9I GGNCC 1 cut(s) 108
AsuHPI GGTGA 2 cut(s) 247, 541
AvaII GGWCC 1 cut(s) 108
BanI GGYRCC 1 cut(s) 248
BanII GRGCYC 2 cut(s) 76, 243
BbrPI CACGTG 1 cut(s) 280
Bbv12I GWGCWC 1 cut(s) 76
BbvI GCAGC 1 cut(s) 85
BccI CCATC 4 cut(s) 161, 422, 495, 565
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BciT130I CCWGG 2 cut(s) 160, 246
BcoDI GTCTC 2 cut(s) 124, 178
BfaI CTAG 2 cut(s) 285, 604
BfmI CTRYAG 1 cut(s) 99
BglI GCCNNNNNGGC 1 cut(s) 92
BglII AGATCT 2 cut(s) 463, 600
BisI GCNGC 5 cut(s) 93, 96, 99, 126, 189
BlsI GCNGC 5 cut(s) 94, 97, 100, 127, 190
Bme1390I CCNGG 2 cut(s) 160, 246
Bme18I GGWCC 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 108
BmiI GGNNCC 3 cut(s) 109, 242, 250
BmrFI CCNGG 2 cut(s) 160, 246
BpmI CTGGAG 1 cut(s) 128
BsaAI YACGTR 1 cut(s) 280
BsaBI GATNNNNATC 1 cut(s) 462
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 159, 244
BsaWI WCCGGW 1 cut(s) 257
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bse118I RCCGGY 1 cut(s) 257
Bse3DI GCAATG 1 cut(s) 45
Bse8I GATNNNNATC 1 cut(s) 462
BseBI CCWGG 2 cut(s) 160, 246
BseDI CCNNGG 2 cut(s) 159, 244
BseGI GGATG 1 cut(s) 589
BseJI GATNNNNATC 1 cut(s) 462
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 481
BseRI GAGGAG 2 cut(s) 166, 186
BseXI GCAGC 1 cut(s) 85
BseYI CCCAGC 1 cut(s) 375
Bsh1236I CGCG 1 cut(s) 92
BshFI GGCC 1 cut(s) 317
BshNI GGYRCC 1 cut(s) 248
BshTI ACCGGT 1 cut(s) 257
BsiHKAI GWGCWC 1 cut(s) 76
BsiSI CCGG 1 cut(s) 258
BslFI GGGAC 4 cut(s) 121, 176, 434, 539
BsmAI GTCTC 2 cut(s) 124, 178
BsmFI GGGAC 4 cut(s) 121, 176, 434, 539
BsnI GGCC 1 cut(s) 317
Bsp1286I GDGCHC 2 cut(s) 76, 243
Bsp143I GATC 3 cut(s) 355, 463, 600
BspACI CCGC 9 cut(s) 36, 69, 92, 95, 123, 126, 189, 490, 579
BspANI GGCC 1 cut(s) 317
BspCNI CTCAG 1 cut(s) 480
BspFNI CGCG 1 cut(s) 92
BspLI GGNNCC 3 cut(s) 109, 242, 250
BspMAI CTGCAG 1 cut(s) 103
BspPI GGATC 1 cut(s) 350
BspT107I GGYRCC 1 cut(s) 248
BsrBI CCGCTC 1 cut(s) 492
BsrDI GCAATG 1 cut(s) 45
BsrFI RCCGGY 1 cut(s) 257
BssAI RCCGGY 1 cut(s) 257
BssECI CCNNGG 2 cut(s) 159, 244
BssMI GATC 3 cut(s) 355, 463, 600
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 2 cut(s) 160, 246
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 280
BstBAI YACGTR 1 cut(s) 280
BstC8I GCNNGC 1 cut(s) 154
BstDEI CTNAG 2 cut(s) 115, 467
BstF5I GGATG 1 cut(s) 589
BstFNI CGCG 1 cut(s) 92
BstHHI GCGC 1 cut(s) 274
BstKTI GATC 3 cut(s) 358, 466, 603
BstMAI GTCTC 2 cut(s) 124, 178
BstMBI GATC 3 cut(s) 355, 463, 600
BstMWI GCNNNNNNNGC 5 cut(s) 66, 92, 98, 280, 401
BstNI CCWGG 2 cut(s) 160, 246
BstSCI CCNGG 2 cut(s) 158, 244
BstSFI CTRYAG 1 cut(s) 99
BstUI CGCG 1 cut(s) 92
BstV1I GCAGC 1 cut(s) 85
BstX2I RGATCY 2 cut(s) 463, 600
BstYI RGATCY 2 cut(s) 463, 600
BsuRI GGCC 1 cut(s) 317
BtsCI GGATG 1 cut(s) 589
BtsIMutI CAGTG 2 cut(s) 54, 475
Cac8I GCNNGC 1 cut(s) 154
CfoI GCGC 1 cut(s) 274
Cfr10I RCCGGY 1 cut(s) 257
Cfr13I GGNCC 1 cut(s) 108
CspAI ACCGGT 1 cut(s) 257
DdeI CTNAG 2 cut(s) 115, 467
DpnI GATC 3 cut(s) 357, 465, 602
DpnII GATC 3 cut(s) 355, 463, 600
DrdI GACNNNNNNGTC 1 cut(s) 170
DseDI GACNNNNNNGTC 1 cut(s) 170
EciI GGCGGA 1 cut(s) 112
Ecl136II GAGCTC 1 cut(s) 74
Eco24I GRGCYC 2 cut(s) 76, 243
Eco47I GGWCC 1 cut(s) 108
Eco53kI GAGCTC 1 cut(s) 74
Eco57I CTGAAG 1 cut(s) 38
Eco72I CACGTG 1 cut(s) 280
EcoICRI GAGCTC 1 cut(s) 74
EcoRII CCWGG 2 cut(s) 158, 244
EcoT38I GRGCYC 2 cut(s) 76, 243
FaiI YATR 5 cut(s) 361, 363, 368, 417, 513
FaqI GGGAC 4 cut(s) 121, 176, 434, 539
FauI CCCGC 1 cut(s) 572
FauNDI CATATG 1 cut(s) 361
Fnu4HI GCNGC 5 cut(s) 93, 96, 99, 126, 189
FokI GGATG 1 cut(s) 596
FriOI GRGCYC 2 cut(s) 76, 243
Fsp4HI GCNGC 5 cut(s) 93, 96, 99, 126, 189
FspBI CTAG 2 cut(s) 285, 604
FspI TGCGCA 1 cut(s) 273
GlaI GCGC 1 cut(s) 273
GluI GCNGC 5 cut(s) 93, 96, 99, 126, 189
GsaI CCCAGC 1 cut(s) 379
GsuI CTGGAG 1 cut(s) 128
HaeIII GGCC 1 cut(s) 317
HapII CCGG 1 cut(s) 258
HhaI GCGC 1 cut(s) 274
Hin1I GRCGYC 1 cut(s) 5
Hin6I GCGC 1 cut(s) 272
HinP1I GCGC 1 cut(s) 272
HincII GTYRAC 2 cut(s) 328, 520
HindII GTYRAC 2 cut(s) 328, 520
HindIII AAGCTT 1 cut(s) 445
HinfI GANTC 1 cut(s) 329
HpaII CCGG 1 cut(s) 258
HphI GGTGA 2 cut(s) 247, 541
Hpy166II GTNNAC 3 cut(s) 9, 328, 520
Hpy188I TCNGA 3 cut(s) 18, 56, 562
Hpy188III TCNNGA 3 cut(s) 81, 106, 145
Hpy8I GTNNAC 3 cut(s) 9, 328, 520
HpyAV CCTTC 2 cut(s) 262, 520
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 1 cut(s) 101
HpyF10VI GCNNNNNNNGC 5 cut(s) 66, 92, 98, 280, 401
HpyF3I CTNAG 2 cut(s) 115, 467
HpySE526I ACGT 1 cut(s) 279
Hsp92I GRCGYC 1 cut(s) 5
HspAI GCGC 1 cut(s) 272
Kzo9I GATC 3 cut(s) 355, 463, 600
LmnI GCTCC 3 cut(s) 71, 246, 432
LpnPI CCDG 8 cut(s) 145, 158, 172, 231, 258, 271, 361, 561
Lsp1109I GCAGC 1 cut(s) 85
MaeI CTAG 2 cut(s) 285, 604
MaeII ACGT 1 cut(s) 279
MaeIII GTNAC 1 cut(s) 287
MalI GATC 3 cut(s) 357, 465, 602
MbiI CCGCTC 1 cut(s) 492
MboI GATC 3 cut(s) 355, 463, 600
MflI RGATCY 2 cut(s) 463, 600
MhlI GDGCHC 2 cut(s) 76, 243
MluCI AATT 3 cut(s) 300, 452, 588
MlyI GAGTC 1 cut(s) 323
MmeI TCCRAC 2 cut(s) 34, 204
MnlI CCTC 6 cut(s) 50, 152, 187, 207, 398, 541
MseI TTAA 1 cut(s) 312
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 2 cut(s) 160, 246
MvaI CCWGG 2 cut(s) 160, 246
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 5 cut(s) 66, 92, 98, 280, 401
NdeI CATATG 1 cut(s) 361
NdeII GATC 3 cut(s) 355, 463, 600
NlaIV GGNNCC 3 cut(s) 109, 242, 250
NsbI TGCGCA 1 cut(s) 273
PflFI GACNNNGTC 1 cut(s) 116
PinAI ACCGGT 1 cut(s) 257
PkrI GCNGC 5 cut(s) 94, 97, 100, 127, 190
PleI GAGTC 1 cut(s) 323
PmaCI CACGTG 1 cut(s) 280
PmlI CACGTG 1 cut(s) 280
PpsI GAGTC 1 cut(s) 323
Ppu21I YACGTR 1 cut(s) 280
Psp124BI GAGCTC 1 cut(s) 76
Psp6I CCWGG 2 cut(s) 158, 244
PspCI CACGTG 1 cut(s) 280
PspFI CCCAGC 1 cut(s) 375
PspGI CCWGG 2 cut(s) 158, 244
PspN4I GGNNCC 3 cut(s) 109, 242, 250
PspPI GGNCC 1 cut(s) 108
PstI CTGCAG 1 cut(s) 103
PsuI RGATCY 2 cut(s) 463, 600
PsyI GACNNNGTC 1 cut(s) 116
SacI GAGCTC 1 cut(s) 76
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 5 cut(s) 93, 96, 99, 126, 189
Sau3AI GATC 3 cut(s) 355, 463, 600
Sau96I GGNCC 1 cut(s) 108
SchI GAGTC 1 cut(s) 323
ScrFI CCNGG 2 cut(s) 160, 246
SduI GDGCHC 2 cut(s) 76, 243
SfcI CTRYAG 1 cut(s) 99
SgrAI CRCCGGYG 1 cut(s) 257
SinI GGWCC 1 cut(s) 108
Sse9I AATT 3 cut(s) 300, 452, 588
SsiI CCGC 9 cut(s) 36, 69, 92, 95, 123, 126, 189, 490, 579
SspMI CTAG 2 cut(s) 285, 604
SstI GAGCTC 1 cut(s) 76
StyD4I CCNGG 2 cut(s) 158, 244
TaiI ACGT 1 cut(s) 282
TaqI TCGA 2 cut(s) 390, 426
TaqII GACCGA 1 cut(s) 125
TasI AATT 3 cut(s) 300, 452, 588
TauI GCSGC 4 cut(s) 95, 98, 128, 191
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 2 cut(s) 54, 475
TseI GCWGC 1 cut(s) 98
TspDTI ATGAA 2 cut(s) 56, 383
TspRI CASTG 2 cut(s) 54, 475
Tth111I GACNNNGTC 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 108
XspI CTAG 2 cut(s) 285, 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.