Rorug04G0148000

Peroxiredoxin-2F

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0012466
Physical Location & Seq
Forward (+)
26018791 .. 26020829
2039 bp
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UTR
Exon/CDS
Intron
Rorug04G0148000.1

Sequence Viewer

Length: 459 bp
ATGACGACTGCAGCTCGACCCACGAGGGCTCCTGCGAAAGGTGGTAATGAACAAGGTGGTACTCAGATTTTTGGCCCATCCCAAAAGTACTCATCAAGGGACATTGCATCCCATACAACTCTAAAACCCAAAAAGGACCGAAAGGACATCCAGGAAGAACTGCAGAAAAGAAACCTCCAGGAAGAGTTGGAAGACCATGAGAGGAGGCATTTTTCATCAAAGGATAAATATAGTTATGACAGAGATCGCAGCAAGAGAGGGAGCCAGCTTTTGTTGGAAAGGATAAGAAGGGACACTGAAGACCGCGTTATACCACGTAATGTAGATGCTGATGATTCTGATCTGGAAGTCAAAAGTGATGATGACAGACACCTTGAAGATAATCTGGATGATTGGCTTGCAGAGGGATTGGAGGATTACCTGGATGATGACTACTTAGTTTTTGACTGCCCAGGTTGA

Protein Analysis

152

Amino Acids

17.7

Weight (kDa)

4.91

Isoelectric Point (pI)

54.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cwf_Cwc_15 PF04889 1 - 127 1.7e-19 Cwf15/Cwc15 cell cycle control protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012466)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06050
fragaria_vesca FvH4_4g14840
malus_domestica MD13G1185800.v1.1 MD16G1186600.v1.1
prunus_persica Prupe.1G153400_v2.0.a1
pyrus_communis pycom13g16030 pycom16g15640
rosa_chinensis RchiOBHm_Chr4g0417421 RchiOBHm_Chr4g0417491
rosa_laevigata RLG00000007904 RLG00000007910
rosa_multiflora Rmu_sc0004142.1_g000019
rosa_roxburghii Rroxscaffold_5G00361170
rosa_rugosa Rorug04G0148000
rosa_samantha Rh4AG211300 Rh4BG211500 Rh4CG222000 Rh4DG209000
rosa_wichuraiana Rw4G017860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 306
AciI CCGC 1 cut(s) 304
AcuI CTGAAG 1 cut(s) 318
AfaI GTAC 2 cut(s) 61, 89
AfiI CCNNNNNNNGG 1 cut(s) 38
AgsI TTSAA 1 cut(s) 377
AjnI CCWGG 4 cut(s) 150, 177, 420, 451
AluBI AGCT 2 cut(s) 14, 268
AluI AGCT 2 cut(s) 14, 268
AoxI GGCC 1 cut(s) 73
ApeKI GCWGC 2 cut(s) 11, 249
AspS9I GGNCC 2 cut(s) 74, 136
AvaII GGWCC 1 cut(s) 136
BanII GRGCYC 1 cut(s) 31
BauI CACGAG 1 cut(s) 22
BbsI GAAGAC 2 cut(s) 198, 306
BbvI GCAGC 2 cut(s) 23, 261
BccI CCATC 1 cut(s) 85
BciT130I CCWGG 4 cut(s) 152, 179, 422, 453
BfmI CTRYAG 2 cut(s) 9, 161
BisI GCNGC 2 cut(s) 12, 250
BlsI GCNGC 2 cut(s) 13, 251
BmcAI AGTACT 1 cut(s) 89
Bme1390I CCNGG 4 cut(s) 152, 179, 422, 453
Bme18I GGWCC 1 cut(s) 136
BmgT120I GGNCC 2 cut(s) 74, 136
BmiI GGNNCC 2 cut(s) 30, 263
BmrFI CCNGG 4 cut(s) 152, 179, 422, 453
BmsI GCATC 2 cut(s) 116, 316
BpiI GAAGAC 2 cut(s) 198, 306
BpmI CTGGAG 1 cut(s) 161
BsaAI YACGTR 1 cut(s) 317
BsaBI GATNNNNATC 1 cut(s) 339
BsaJI CCNNGG 1 cut(s) 451
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bsc4I CCNNNNNNNGG 1 cut(s) 38
Bse3DI GCAATG 1 cut(s) 102
Bse8I GATNNNNATC 1 cut(s) 339
BseBI CCWGG 4 cut(s) 152, 179, 422, 453
BseDI CCNNGG 1 cut(s) 451
BseGI GGATG 5 cut(s) 77, 107, 147, 394, 430
BseJI GATNNNNATC 1 cut(s) 339
BseLI CCNNNNNNNGG 1 cut(s) 38
BseMI GCAATG 1 cut(s) 102
BseMII CTCAG 1 cut(s) 77
BseRI GAGGAG 1 cut(s) 217
BseXI GCAGC 2 cut(s) 23, 261
Bsh1236I CGCG 1 cut(s) 306
BshFI GGCC 1 cut(s) 75
BslFI GGGAC 2 cut(s) 113, 305
BslI CCNNNNNNNGG 1 cut(s) 38
BsmFI GGGAC 2 cut(s) 113, 305
BsnI GGCC 1 cut(s) 75
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 2 cut(s) 244, 340
BspACI CCGC 1 cut(s) 304
BspANI GGCC 1 cut(s) 75
BspCNI CTCAG 1 cut(s) 76
BspFNI CGCG 1 cut(s) 306
BspLI GGNNCC 2 cut(s) 30, 263
BspMAI CTGCAG 2 cut(s) 13, 165
BsrDI GCAATG 1 cut(s) 102
BssECI CCNNGG 1 cut(s) 451
BssMI GATC 2 cut(s) 244, 340
BssSI CACGAG 1 cut(s) 22
Bst2BI CACGAG 1 cut(s) 22
Bst2UI CCWGG 4 cut(s) 152, 179, 422, 453
Bst6I CTCTTC 1 cut(s) 177
BstBAI YACGTR 1 cut(s) 317
BstC8I GCNNGC 2 cut(s) 266, 399
BstDEI CTNAG 2 cut(s) 63, 436
BstENI CCTNNNNNAGG 1 cut(s) 36
BstF5I GGATG 5 cut(s) 77, 107, 147, 394, 430
BstFNI CGCG 1 cut(s) 306
BstKTI GATC 2 cut(s) 247, 343
BstMBI GATC 2 cut(s) 244, 340
BstNI CCWGG 4 cut(s) 152, 179, 422, 453
BstSCI CCNGG 4 cut(s) 150, 177, 420, 451
BstSFI CTRYAG 2 cut(s) 9, 161
BstUI CGCG 1 cut(s) 306
BstV1I GCAGC 2 cut(s) 23, 261
BstV2I GAAGAC 2 cut(s) 198, 306
BsuRI GGCC 1 cut(s) 75
BtsCI GGATG 5 cut(s) 77, 107, 147, 394, 430
BtsIMutI CAGTG 1 cut(s) 294
Cac8I GCNNGC 2 cut(s) 266, 399
Cfr13I GGNCC 2 cut(s) 74, 136
Csp6I GTAC 2 cut(s) 60, 88
CviAII CATG 1 cut(s) 197
CviJI RGCY 6 cut(s) 14, 29, 75, 264, 268, 397
CviKI_1 RGCY 6 cut(s) 14, 29, 75, 264, 268, 397
CviQI GTAC 2 cut(s) 60, 88
DdeI CTNAG 2 cut(s) 63, 436
DpnI GATC 2 cut(s) 246, 342
DpnII GATC 2 cut(s) 244, 340
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco24I GRGCYC 1 cut(s) 31
Eco47I GGWCC 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 318
EcoNI CCTNNNNNAGG 1 cut(s) 36
EcoRII CCWGG 4 cut(s) 150, 177, 420, 451
EcoT38I GRGCYC 1 cut(s) 31
FaeI CATG 1 cut(s) 200
FaiI YATR 5 cut(s) 114, 198, 231, 237, 311
FaqI GGGAC 2 cut(s) 113, 305
FatI CATG 1 cut(s) 196
Fnu4HI GCNGC 2 cut(s) 12, 250
FokI GGATG 5 cut(s) 64, 94, 134, 401, 437
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 2 cut(s) 12, 250
GluI GCNGC 2 cut(s) 12, 250
GsuI CTGGAG 1 cut(s) 161
HaeIII GGCC 1 cut(s) 75
Hin1II CATG 1 cut(s) 200
HinfI GANTC 1 cut(s) 335
Hpy188I TCNGA 2 cut(s) 66, 340
Hpy188III TCNNGA 2 cut(s) 344, 386
HpyAV CCTTC 1 cut(s) 282
HpyCH4IV ACGT 1 cut(s) 316
HpyCH4V TGCA 4 cut(s) 11, 107, 163, 401
HpyF3I CTNAG 2 cut(s) 63, 436
HpySE526I ACGT 1 cut(s) 316
Hsp92II CATG 1 cut(s) 200
Kzo9I GATC 2 cut(s) 244, 340
LmnI GCTCC 2 cut(s) 34, 261
Lsp1109I GCAGC 2 cut(s) 23, 261
LweI GCATC 2 cut(s) 116, 316
MaeII ACGT 1 cut(s) 316
MalI GATC 2 cut(s) 246, 342
MboI GATC 2 cut(s) 244, 340
MboII GAAGA 5 cut(s) 167, 194, 203, 311, 389
MhlI GDGCHC 1 cut(s) 31
MmeI TCCRAC 2 cut(s) 168, 255
MnlI CCTC 7 cut(s) 18, 185, 195, 198, 251, 397, 406
MspR9I CCNGG 4 cut(s) 152, 179, 422, 453
MvaI CCWGG 4 cut(s) 152, 179, 422, 453
MvnI CGCG 1 cut(s) 306
NdeII GATC 2 cut(s) 244, 340
NlaIII CATG 1 cut(s) 200
NlaIV GGNNCC 2 cut(s) 30, 263
PfeI GAWTC 1 cut(s) 335
PfoI TCCNGGA 2 cut(s) 150, 177
PkrI GCNGC 2 cut(s) 13, 251
Ppu21I YACGTR 1 cut(s) 317
Psp6I CCWGG 4 cut(s) 150, 177, 420, 451
PspGI CCWGG 4 cut(s) 150, 177, 420, 451
PspN4I GGNNCC 2 cut(s) 30, 263
PspPI GGNCC 2 cut(s) 74, 136
PstI CTGCAG 2 cut(s) 13, 165
RsaI GTAC 2 cut(s) 61, 89
RsaNI GTAC 2 cut(s) 60, 88
SatI GCNGC 2 cut(s) 12, 250
Sau3AI GATC 2 cut(s) 244, 340
Sau96I GGNCC 2 cut(s) 74, 136
ScaI AGTACT 1 cut(s) 89
ScrFI CCNGG 4 cut(s) 152, 179, 422, 453
SduI GDGCHC 1 cut(s) 31
SetI ASST 9 cut(s) 16, 43, 58, 177, 270, 319, 375, 423, 457
SfaNI GCATC 2 cut(s) 116, 316
SfcI CTRYAG 2 cut(s) 9, 161
SinI GGWCC 1 cut(s) 136
SsiI CCGC 1 cut(s) 304
StyD4I CCNGG 4 cut(s) 150, 177, 420, 451
TaiI ACGT 1 cut(s) 319
TaqI TCGA 1 cut(s) 16
TaqII GACCGA 1 cut(s) 153
TatI WGTACW 1 cut(s) 87
TfiI GAWTC 1 cut(s) 335
TscAI CASTG 1 cut(s) 301
TseI GCWGC 2 cut(s) 11, 249
TspDTI ATGAA 2 cut(s) 63, 204
TspRI CASTG 1 cut(s) 301
VpaK11BI GGWCC 1 cut(s) 136
XagI CCTNNNNNAGG 1 cut(s) 36
ZrmI AGTACT 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.