Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008699

Physical Location & Seq

Genomic Coordinates Reverse (-)

1834591 .. 1837988

Gene Structure 3398 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G06080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGTCTAAGAACTCAAACGTTGAAGAGAATGGAGGAGCAAAGCCAATCTGTGAAGCTTTGAGGAGATTCAAAAGGTCGAGGCTTGTGTTCGAGCCGTCTTTAGGAGTGTTGGGGTTTTTCTTGGTTGGGGTCTGTTTGGTTTGCAGTTTTTTCTTCTTTGATTACAGAAGCGTTGCTAAAAGCTATGGCCTTTCGGATAAATCTGAGAGATTCGTTTGGCTCAAGTTTGACAATATCAGCAGCAGCAGCAGTAGTAGTAGTAATAGTTCAAAGAGAGTTGGGTTTCTGGAAGAGAGTGGAAGTGGGTGTGATGTGTTCGATGGAGATTGGGTTTGGGACGAGTCTTATCCATTGTATCAATCCAAAGATTGCAGATTTCTCGATGAAGGGTTTAGGTGTAGTGACTTTGGAAGGTCTGATTTGTTCTATACTCAGTGGCGTTGGCAACCTAGACACTGTAATTTGCCCAGATTTGATGCAAAACTGATGCTGGAGAAACTCCGGGACAAGCGGCTTGTGTTTGTTGGCGATTCAATAGGAAGAAACCAGTGGGAGTCTCTACTTTGTCTACTATCTTCTGCAGTCAAGAACGAGAGCTTGATTTATGAAATAAATGGAAGTCCGATCACAAAGCACAAAGGGTTCTTGGTGTTCAAATTTGAGGAGTACAATTGCACAGTGGAGTACTACAGATCTCCATTTTTGGTTCCTCAAAGCAGACCACCGATTGGATCACCTGGAAAGGTCAAGACAAGTTTGAAACTGGACACTATGGATTGGACTTCAAGCAAATGGAGAGATGCTGACGTTTTAGTGCTCAATACTGGACACTGGTGGAACGAGGGGAAAACTACTAGAACGGGATGTTACTTTCAAGAAGGAGAAGAAGTAAAATTGAAGATGAATGTAGATGATGCTTATAAGCGAGCTCTGAATACCGTTGTGAAATGGATACATACCGAGCTCGATTCAAACAAAACTCAAGTCTTCTTTCGCACTTTCGCCCCCGTGCATTTCAGGTTTGTACGGTATTACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0007623 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048511 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

346

Amino Acids

40.2

Weight (kDa)

8.79

Isoelectric Point (pI)

51.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	102 - 154	6.6e-21	PMR5 N terminal Domain
PC-Esterase	PF13839	155 - 340	3.7e-66	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06080 AT3G06080 AT5G19160 AT5G19160
fragaria_vesca	FvH4_4g14780 FvH4_4g14780 FvH4_4g14780
malus_domestica	MD13G1185400.v1.1 MD16G1186300.v1.1
prunus_persica	Prupe.1G153100_v2.0.a1 Prupe.1G153100_v2.0.a1 Prupe.1G153100_v2.0.a1
pyrus_communis	pycom13g15990 pycom16g15590
rosa_chinensis	RchiOBHm_Chr4g0417821
rosa_laevigata	RLG00000007899
rosa_multiflora	Rmu_sc0000480.1_g000001 Rmu_sc0018885.1_g000003
rosa_roxburghii	Rroxscaffold_5G00361240
rosa_rugosa	Rorug04G0149300
rosa_samantha	Rh4CG222600 Rh4DG209600
rosa_wichuraiana	Rw4G017950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	921
AccB7I	CCANNNNNTGG	1 cut(s)	728
AccI	GTMKAC	1 cut(s)	568
AciI	CCGC	1 cut(s)	511
AclI	AACGTT	1 cut(s)	18
AclWI	GGATC	1 cut(s)	739
AcsI	RAATTY	1 cut(s)	656
AfaI	GTAC	3 cut(s)	668, 686, 1026
AfiI	CCNNNNNNNGG	2 cut(s)	101, 728
AjnI	CCWGG	1 cut(s)	736
AluBI	AGCT	5 cut(s)	56, 183, 597, 929, 964
AluI	AGCT	5 cut(s)	56, 183, 597, 929, 964
Alw21I	GWGCWC	3 cut(s)	819, 931, 966
Alw26I	GTCTC	1 cut(s)	561
AlwI	GGATC	1 cut(s)	739
AoxI	GGCC	1 cut(s)	187
ApeKI	GCWGC	3 cut(s)	240, 243, 246
ApoI	RAATTY	1 cut(s)	656
ArsI	GACNNNNNNTTYG	2 cut(s)	969, 1001
AsuC2I	CCSGG	1 cut(s)	503
AsuHPI	GGTGA	1 cut(s)	726
BanII	GRGCYC	2 cut(s)	931, 966
BbsI	GAAGAC	1 cut(s)	979
Bbv12I	GWGCWC	3 cut(s)	819, 931, 966
BbvI	GCAGC	3 cut(s)	252, 255, 258
BccI	CCATC	1 cut(s)	314
BceAI	ACGGC	1 cut(s)	79
BcgI	CGANNNNNNTGC	2 cut(s)	361, 395
BciT130I	CCWGG	1 cut(s)	738
BciVI	GTATCC	1 cut(s)	945
BcnI	CCSGG	1 cut(s)	503
BcoDI	GTCTC	1 cut(s)	561
BfaI	CTAG	2 cut(s)	450, 855
BfmI	CTRYAG	2 cut(s)	579, 688
BfuI	GTATCC	1 cut(s)	945
BglII	AGATCT	1 cut(s)	692
BisI	GCNGC	4 cut(s)	241, 244, 247, 512
BlsI	GCNGC	4 cut(s)	242, 245, 248, 513
BmcAI	AGTACT	1 cut(s)	686
Bme1390I	CCNGG	2 cut(s)	503, 738
BmiI	GGNNCC	1 cut(s)	708
BmrFI	CCNGG	2 cut(s)	503, 738
BmsI	GCATC	4 cut(s)	466, 477, 790, 904
BpiI	GAAGAC	1 cut(s)	979
BpmI	CTGGAG	1 cut(s)	512
BpuEI	CTTGAG	2 cut(s)	206, 966
BpuMI	CCSGG	1 cut(s)	503
BsaXI	ACNNNNNCTCC	4 cut(s)	315, 345, 873, 903
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 728
Bse1I	ACTGG	4 cut(s)	547, 768, 829, 836
BseBI	CCWGG	1 cut(s)	738
BseGI	GGATG	1 cut(s)	869
BseLI	CCNNNNNNNGG	2 cut(s)	101, 728
BseMII	CTCAG	2 cut(s)	195, 446
BseNI	ACTGG	4 cut(s)	547, 768, 829, 836
BseRI	GAGGAG	3 cut(s)	48, 76, 677
BseXI	GCAGC	3 cut(s)	252, 255, 258
BshFI	GGCC	1 cut(s)	189
BsiHKAI	GWGCWC	3 cut(s)	819, 931, 966
BsiSI	CCGG	1 cut(s)	502
BslFI	GGGAC	2 cut(s)	350, 518
BslI	CCNNNNNNNGG	2 cut(s)	101, 728
BsmAI	GTCTC	1 cut(s)	561
BsmFI	GGGAC	2 cut(s)	350, 518
BsnI	GGCC	1 cut(s)	189
Bsp1286I	GDGCHC	3 cut(s)	819, 931, 966
Bsp143I	GATC	3 cut(s)	624, 692, 731
BspACI	CCGC	1 cut(s)	511
BspANI	GGCC	1 cut(s)	189
BspCNI	CTCAG	2 cut(s)	196, 445
BspLI	GGNNCC	1 cut(s)	708
BspMAI	CTGCAG	1 cut(s)	583
BspPI	GGATC	1 cut(s)	739
BsrI	ACTGG	4 cut(s)	547, 768, 829, 836
BssMI	GATC	3 cut(s)	624, 692, 731
Bst2UI	CCWGG	1 cut(s)	738
Bst4CI	ACNGT	4 cut(s)	458, 679, 940, 1029
Bst6I	CTCTTC	2 cut(s)	18, 285
BstC8I	GCNNGC	1 cut(s)	927
BstDEI	CTNAG	3 cut(s)	6, 204, 432
BstF5I	GGATG	1 cut(s)	869
BstKTI	GATC	3 cut(s)	627, 695, 734
BstMAI	GTCTC	1 cut(s)	561
BstMBI	GATC	3 cut(s)	624, 692, 731
BstMWI	GCNNNNNNNGC	1 cut(s)	246
BstNI	CCWGG	1 cut(s)	738
BstSCI	CCNGG	2 cut(s)	501, 736
BstSFI	CTRYAG	2 cut(s)	579, 688
BstV1I	GCAGC	3 cut(s)	252, 255, 258
BstV2I	GAAGAC	1 cut(s)	979
BstX2I	RGATCY	1 cut(s)	692
BstYI	RGATCY	1 cut(s)	692
BsuI	GTATCC	1 cut(s)	945
BsuRI	GGCC	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	869
BtsIMutI	CAGTG	5 cut(s)	440, 454, 554, 684, 829
Cac8I	GCNNGC	1 cut(s)	927
Csp6I	GTAC	3 cut(s)	667, 685, 1025
CviQI	GTAC	3 cut(s)	667, 685, 1025
DdeI	CTNAG	3 cut(s)	6, 204, 432
DpnI	GATC	3 cut(s)	626, 694, 733
DpnII	GATC	3 cut(s)	624, 692, 731
Eam1104I	CTCTTC	2 cut(s)	18, 285
EarI	CTCTTC	2 cut(s)	18, 285
Ecl136II	GAGCTC	2 cut(s)	929, 964
Eco24I	GRGCYC	2 cut(s)	931, 966
Eco53kI	GAGCTC	2 cut(s)	929, 964
EcoICRI	GAGCTC	2 cut(s)	929, 964
EcoRII	CCWGG	1 cut(s)	736
EcoT38I	GRGCYC	2 cut(s)	931, 966
FaiI	YATR	6 cut(s)	186, 429, 606, 773, 921, 957
FaqI	GGGAC	2 cut(s)	350, 518
FblI	GTMKAC	1 cut(s)	568
Fnu4HI	GCNGC	4 cut(s)	241, 244, 247, 512
FokI	GGATG	1 cut(s)	876
FriOI	GRGCYC	2 cut(s)	931, 966
Fsp4HI	GCNGC	4 cut(s)	241, 244, 247, 512
FspBI	CTAG	2 cut(s)	450, 855
GluI	GCNGC	4 cut(s)	241, 244, 247, 512
GsuI	CTGGAG	1 cut(s)	512
HaeIII	GGCC	1 cut(s)	189
HapII	CCGG	1 cut(s)	502
HindIII	AAGCTT	1 cut(s)	54
HinfI	GANTC	6 cut(s)	66, 210, 341, 530, 554, 968
HpaII	CCGG	1 cut(s)	502
HphI	GGTGA	1 cut(s)	726
Hpy166II	GTNNAC	1 cut(s)	569
Hpy188I	TCNGA	5 cut(s)	196, 205, 418, 624, 933
Hpy188III	TCNNGA	6 cut(s)	287, 380, 586, 748, 875, 1038
Hpy8I	GTNNAC	1 cut(s)	569
HpyAV	CCTTC	3 cut(s)	380, 405, 872
HpyCH4III	ACNGT	4 cut(s)	458, 679, 940, 1029
HpyCH4IV	ACGT	2 cut(s)	18, 807
HpyCH4V	TGCA	6 cut(s)	144, 372, 479, 581, 675, 1012
HpyF10VI	GCNNNNNNNGC	1 cut(s)	246
HpyF3I	CTNAG	3 cut(s)	6, 204, 432
HpySE526I	ACGT	2 cut(s)	18, 807
Kzo9I	GATC	3 cut(s)	624, 692, 731
LmnI	GCTCC	1 cut(s)	35
Lsp1109I	GCAGC	3 cut(s)	252, 255, 258
LweI	GCATC	4 cut(s)	466, 477, 790, 904
MaeI	CTAG	2 cut(s)	450, 855
MaeII	ACGT	2 cut(s)	18, 807
MaeIII	GTNAC	2 cut(s)	401, 866
MalI	GATC	3 cut(s)	626, 694, 733
MboI	GATC	3 cut(s)	624, 692, 731
MboII	GAAGA	8 cut(s)	35, 145, 302, 552, 567, 896, 910, 979
MfeI	CAATTG	1 cut(s)	670
MflI	RGATCY	1 cut(s)	692
MhlI	GDGCHC	3 cut(s)	819, 931, 966
MluCI	AATT	4 cut(s)	460, 656, 670, 893
MlyI	GAGTC	2 cut(s)	350, 563
MnlI	CCTC	6 cut(s)	26, 54, 72, 655, 720, 835
MspI	CCGG	1 cut(s)	502
MspR9I	CCNGG	2 cut(s)	503, 738
MunI	CAATTG	1 cut(s)	670
MvaI	CCWGG	1 cut(s)	738
MwoI	GCNNNNNNNGC	1 cut(s)	246
NciI	CCSGG	1 cut(s)	503
NdeII	GATC	3 cut(s)	624, 692, 731
NlaIV	GGNNCC	1 cut(s)	708
NmuCI	GTSAC	1 cut(s)	401
PfeI	GAWTC	4 cut(s)	66, 210, 530, 968
PflMI	CCANNNNNTGG	1 cut(s)	728
PfoI	TCCNGGA	1 cut(s)	501
PkrI	GCNGC	4 cut(s)	242, 245, 248, 513
PleI	GAGTC	2 cut(s)	349, 562
PpsI	GAGTC	2 cut(s)	349, 562
PsiI	TTATAA	1 cut(s)	921
Psp124BI	GAGCTC	2 cut(s)	931, 966
Psp1406I	AACGTT	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	736
PspGI	CCWGG	1 cut(s)	736
PspN4I	GGNNCC	1 cut(s)	708
PsrI	GAACNNNNNNTAC	2 cut(s)	250, 282
PstI	CTGCAG	1 cut(s)	583
PsuI	RGATCY	1 cut(s)	692
RsaI	GTAC	3 cut(s)	668, 686, 1026
RsaNI	GTAC	3 cut(s)	667, 685, 1025
SacI	GAGCTC	2 cut(s)	931, 966
SatI	GCNGC	4 cut(s)	241, 244, 247, 512
Sau3AI	GATC	3 cut(s)	624, 692, 731
ScaI	AGTACT	1 cut(s)	686
SchI	GAGTC	2 cut(s)	350, 563
ScrFI	CCNGG	2 cut(s)	503, 738
SduI	GDGCHC	3 cut(s)	819, 931, 966
SfaNI	GCATC	4 cut(s)	466, 477, 790, 904
SfcI	CTRYAG	2 cut(s)	579, 688
SmlI	CTYRAG	2 cut(s)	221, 981
SmoI	CTYRAG	2 cut(s)	221, 981
Sse9I	AATT	4 cut(s)	460, 656, 670, 893
SsiI	CCGC	1 cut(s)	511
SspMI	CTAG	2 cut(s)	450, 855
SstI	GAGCTC	2 cut(s)	931, 966
StyD4I	CCNGG	2 cut(s)	501, 736
TaaI	ACNGT	4 cut(s)	458, 679, 940, 1029
TaiI	ACGT	2 cut(s)	21, 810
TaqI	TCGA	5 cut(s)	77, 90, 318, 381, 966
TasI	AATT	4 cut(s)	460, 656, 670, 893
TatI	WGTACW	2 cut(s)	666, 684
TauI	GCSGC	1 cut(s)	514
TfiI	GAWTC	4 cut(s)	66, 210, 530, 968
TscAI	CASTG	5 cut(s)	440, 461, 554, 684, 836
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	3 cut(s)	240, 243, 246
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	3 cut(s)	399, 621, 917
TspRI	CASTG	5 cut(s)	440, 461, 554, 684, 836
Van91I	CCANNNNNTGG	1 cut(s)	728
XapI	RAATTY	1 cut(s)	656
XmiI	GTMKAC	1 cut(s)	568
XspI	CTAG	2 cut(s)	450, 855
ZrmI	AGTACT	1 cut(s)	686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.