Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008699

Physical Location & Seq

Genomic Coordinates Forward (+)

22577889 .. 22581770

Gene Structure 3882 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007899

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGTCTAAGGACCCATCTGAGCCTGACCTTGAAGCCATGCCATTCACTGAAGCTTTCAAGAAGTTCAAGCGGTTGAAGCTGTTTGAGCCCTCTTTGGGGGTCTTGGGATTCTTCTTTGTGTCTGTGTGTGTGATTCTGTGCTTCTTTTACTTGGATTACAGAGCTGCTGCTAAGGGGTTTCGGTTCTCCGGTCAGTCGGAGCGGTTCACGTGGTTGCAGAGCAATGAGTCTAGCAAGGATGTCAGGGTTGAGTTTCTTGCGGAGGAGGGAGGTGTTTGTGACGTGTTTGATGGGGATTGGGTGTGGGATGAGTCATACCCTTTGTATCAGTCCAATGGATGCCCCTTTTTGGATGATGGCTTTAGGTGTAGTGAGAATGGCCGACCTGATTTGTTTTACACAAAGTGGAGATGGCAACCCAGAAATTGCAACTTGCCCAGATTTGATGCAAAGTTGATGCTGGAAAAACTGCGGGACAAGCGAGTAGTGTTTGTTGGTGATTCCATTGGACGAAACCAGTGGGAATCATTCCTATGCATGCTGTCTTCGGCAGTTCCTAATAAGGATTCAATCTATGAAGTGAATGGCAACCCAATTACCAAGCACAAGGGGTTTTTGGTGTTCAAATTTAAGGACTATAACTGCACTGTGGAGTACTACAGAGCTCCATTTCTTGTAGTGCAGAGCCGTCCTCCTTCAGGAGCTTCACAAAAGATCCGAACAACTTTGAGATTGGACCAAATGGATTGGAATTCGGGAAAGTGGAGAGATGCAGATATGCTGGTTTTCAACACAGGACACTGGTGGAATTATGAGAAGACAATAAGAGGAGGTTGTTACTTCCAGGAAGGGGCAGAAGTAAAGATGGAGATGAGTGTAGAAGATGCATATCACAGGTCCATAGAGACTGTAGTGCGATGGATAGATACTGCAGTAGATCCAAACAGGACTCGGGTTTTCTTTCGAACATATGCTCCTGTGCATTTCAGGTTCGTTTTGTTACTTGAATTAACTTTTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0007623 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048511 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

341

Amino Acids

39.9

Weight (kDa)

6.9

Isoelectric Point (pI)

49.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	93 - 144	1.2e-22	PMR5 N terminal Domain
PC-Esterase	PF13839	145 - 330	1.8e-66	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06080 AT3G06080 AT5G19160 AT5G19160
fragaria_vesca	FvH4_4g14780 FvH4_4g14780 FvH4_4g14780
malus_domestica	MD13G1185400.v1.1 MD16G1186300.v1.1
prunus_persica	Prupe.1G153100_v2.0.a1 Prupe.1G153100_v2.0.a1 Prupe.1G153100_v2.0.a1
pyrus_communis	pycom13g15990 pycom16g15590
rosa_chinensis	RchiOBHm_Chr4g0417821
rosa_laevigata	RLG00000007899
rosa_multiflora	Rmu_sc0000480.1_g000001 Rmu_sc0018885.1_g000003
rosa_roxburghii	Rroxscaffold_5G00361240
rosa_rugosa	Rorug04G0149300
rosa_samantha	Rh4CG222600 Rh4DG209600
rosa_wichuraiana	Rw4G017950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	202
AciI	CCGC	4 cut(s)	70, 202, 260, 472
AclWI	GGATC	2 cut(s)	709, 932
AcoI	YGGCCR	1 cut(s)	379
AcsI	RAATTY	2 cut(s)	626, 751
AcuI	CTGAAG	2 cut(s)	69, 681
AcvI	CACGTG	1 cut(s)	210
AdeI	CACNNNGTG	1 cut(s)	405
AfaI	GTAC	1 cut(s)	656
AfiI	CCNNNNNNNGG	5 cut(s)	95, 96, 349, 698, 850
AflIII	ACRYGT	1 cut(s)	282
AgsI	TTSAA	8 cut(s)	32, 58, 67, 76, 570, 625, 790, 1007
AjiI	CACGTC	1 cut(s)	283
AjnI	CCWGG	1 cut(s)	843
AloI	GAACNNNNNNTCC	2 cut(s)	958, 990
AluBI	AGCT	5 cut(s)	53, 79, 164, 665, 704
AluI	AGCT	5 cut(s)	53, 79, 164, 665, 704
Alw21I	GWGCWC	1 cut(s)	667
Alw26I	GTCTC	1 cut(s)	899
AlwI	GGATC	2 cut(s)	709, 932
Ama87I	CYCGRG	1 cut(s)	951
AoxI	GGCC	1 cut(s)	379
ApeKI	GCWGC	2 cut(s)	164, 167
ApoI	RAATTY	2 cut(s)	626, 751
AspS9I	GGNCC	3 cut(s)	10, 736, 897
AsuHPI	GGTGA	1 cut(s)	509
AsuII	TTCGAA	1 cut(s)	964
AvaI	CYCGRG	1 cut(s)	951
AvaII	GGWCC	3 cut(s)	10, 736, 897
BaeI	ACNNNNGTAYC	2 cut(s)	918, 951
BanII	GRGCYC	2 cut(s)	90, 667
BbrPI	CACGTG	1 cut(s)	210
BbsI	GAAGAC	2 cut(s)	537, 824
Bbv12I	GWGCWC	1 cut(s)	667
BbvI	GCAGC	2 cut(s)	151, 154
BccI	CCATC	6 cut(s)	22, 284, 350, 405, 859, 912
BceAI	ACGGC	1 cut(s)	672
BciT130I	CCWGG	1 cut(s)	845
BcoDI	GTCTC	1 cut(s)	899
BfaI	CTAG	1 cut(s)	231
BfmI	CTRYAG	3 cut(s)	658, 909, 930
BisI	GCNGC	2 cut(s)	165, 168
BlsI	GCNGC	2 cut(s)	166, 169
BmcAI	AGTACT	1 cut(s)	656
Bme1390I	CCNGG	1 cut(s)	845
Bme18I	GGWCC	3 cut(s)	10, 736, 897
BmeT110I	CYCGRG	1 cut(s)	951
BmgBI	CACGTC	1 cut(s)	283
BmgT120I	GGNCC	3 cut(s)	10, 736, 897
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	1 cut(s)	845
BmsI	GCATC	5 cut(s)	329, 436, 447, 760, 874
BpiI	GAAGAC	2 cut(s)	537, 824
BplI	GAGNNNNNCTC	2 cut(s)	676, 708
Bpu10I	CCTNAGC	1 cut(s)	171
Bpu14I	TTCGAA	1 cut(s)	964
BsaAI	YACGTR	1 cut(s)	210
BsaBI	GATNNNNATC	1 cut(s)	888
BsaWI	WCCGGW	1 cut(s)	188
BsaXI	ACNNNNNCTCC	2 cut(s)	958, 988
Bsc4I	CCNNNNNNNGG	5 cut(s)	95, 96, 349, 698, 850
Bse1I	ACTGG	2 cut(s)	517, 806
Bse3DI	GCAATG	1 cut(s)	229
Bse8I	GATNNNNATC	1 cut(s)	888
BseBI	CCWGG	1 cut(s)	845
BseGI	GGATG	4 cut(s)	244, 313, 344, 358
BseJI	GATNNNNATC	1 cut(s)	888
BseLI	CCNNNNNNNGG	5 cut(s)	95, 96, 349, 698, 850
BseMI	GCAATG	1 cut(s)	229
BseMII	CTCAG	1 cut(s)	9
BseNI	ACTGG	2 cut(s)	517, 806
BseRI	GAGGAG	2 cut(s)	278, 843
BseXI	GCAGC	2 cut(s)	151, 154
BsgI	GTGCAG	2 cut(s)	628, 701
BshFI	GGCC	1 cut(s)	381
BsiHKAI	GWGCWC	1 cut(s)	667
BsiHKCI	CYCGRG	1 cut(s)	951
BsiSI	CCGG	1 cut(s)	189
BslFI	GGGAC	1 cut(s)	488
BslI	CCNNNNNNNGG	5 cut(s)	95, 96, 349, 698, 850
BsmAI	GTCTC	1 cut(s)	899
BsmFI	GGGAC	1 cut(s)	488
BsnI	GGCC	1 cut(s)	381
BsoBI	CYCGRG	1 cut(s)	951
Bsp119I	TTCGAA	1 cut(s)	964
Bsp1286I	GDGCHC	2 cut(s)	90, 667
Bsp143I	GATC	2 cut(s)	714, 937
BspACI	CCGC	4 cut(s)	70, 202, 260, 472
BspANI	GGCC	1 cut(s)	381
BspCNI	CTCAG	1 cut(s)	10
BspLI	GGNNCC	1 cut(s)	12
BspMAI	CTGCAG	1 cut(s)	934
BspPI	GGATC	2 cut(s)	709, 932
BspT104I	TTCGAA	1 cut(s)	964
BsrBI	CCGCTC	1 cut(s)	202
BsrDI	GCAATG	1 cut(s)	229
BsrI	ACTGG	2 cut(s)	517, 806
BssMI	GATC	2 cut(s)	714, 937
Bst2UI	CCWGG	1 cut(s)	845
Bst4CI	ACNGT	2 cut(s)	649, 910
BstBAI	YACGTR	1 cut(s)	210
BstBI	TTCGAA	1 cut(s)	964
BstC8I	GCNNGC	1 cut(s)	539
BstDEI	CTNAG	3 cut(s)	6, 18, 171
BstENI	CCTNNNNNAGG	1 cut(s)	696
BstF5I	GGATG	4 cut(s)	244, 313, 344, 358
BstKTI	GATC	2 cut(s)	717, 940
BstMAI	GTCTC	1 cut(s)	899
BstMBI	GATC	2 cut(s)	714, 937
BstMWI	GCNNNNNNNGC	3 cut(s)	76, 85, 478
BstNI	CCWGG	1 cut(s)	845
BstNSI	RCATGY	1 cut(s)	541
BstSCI	CCNGG	1 cut(s)	843
BstSFI	CTRYAG	3 cut(s)	658, 909, 930
BstV1I	GCAGC	2 cut(s)	151, 154
BstV2I	GAAGAC	2 cut(s)	537, 824
BstX2I	RGATCY	2 cut(s)	714, 937
BstYI	RGATCY	2 cut(s)	714, 937
BsuRI	GGCC	1 cut(s)	381
BtgZI	GCGATG	1 cut(s)	931
BtrI	CACGTC	1 cut(s)	283
BtsCI	GGATG	4 cut(s)	244, 313, 344, 358
BtsIMutI	CAGTG	4 cut(s)	45, 524, 645, 799
Cac8I	GCNNGC	1 cut(s)	539
Cfr13I	GGNCC	3 cut(s)	10, 736, 897
Csp6I	GTAC	1 cut(s)	655
CviAII	CATG	2 cut(s)	37, 538
CviQI	GTAC	1 cut(s)	655
DdeI	CTNAG	3 cut(s)	6, 18, 171
DpnI	GATC	2 cut(s)	716, 939
DpnII	GATC	2 cut(s)	714, 937
DraIII	CACNNNGTG	1 cut(s)	405
EaeI	YGGCCR	1 cut(s)	379
Ecl136II	GAGCTC	1 cut(s)	665
Eco24I	GRGCYC	2 cut(s)	90, 667
Eco47I	GGWCC	3 cut(s)	10, 736, 897
Eco53kI	GAGCTC	1 cut(s)	665
Eco57I	CTGAAG	2 cut(s)	69, 681
Eco72I	CACGTG	1 cut(s)	210
Eco88I	CYCGRG	1 cut(s)	951
EcoICRI	GAGCTC	1 cut(s)	665
EcoNI	CCTNNNNNAGG	1 cut(s)	696
EcoO109I	RGGNCCY	1 cut(s)	10
EcoRI	GAATTC	1 cut(s)	751
EcoRII	CCWGG	1 cut(s)	843
EcoT22I	ATGCAT	2 cut(s)	539, 889
EcoT38I	GRGCYC	2 cut(s)	90, 667
FaeI	CATG	2 cut(s)	40, 541
FaqI	GGGAC	1 cut(s)	488
FatI	CATG	2 cut(s)	36, 537
FauI	CCCGC	1 cut(s)	465
FauNDI	CATATG	1 cut(s)	970
Fnu4HI	GCNGC	2 cut(s)	165, 168
FokI	GGATG	4 cut(s)	251, 320, 351, 365
FriOI	GRGCYC	2 cut(s)	90, 667
Fsp4HI	GCNGC	2 cut(s)	165, 168
FspBI	CTAG	1 cut(s)	231
GluI	GCNGC	2 cut(s)	165, 168
HaeIII	GGCC	1 cut(s)	381
HapII	CCGG	1 cut(s)	189
Hin1II	CATG	2 cut(s)	40, 541
HindIII	AAGCTT	1 cut(s)	51
HinfI	GANTC	8 cut(s)	108, 133, 227, 311, 500, 524, 566, 949
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	1 cut(s)	509
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	3 cut(s)	19, 199, 719
Hpy188III	TCNNGA	3 cut(s)	58, 699, 756
Hpy8I	GTNNAC	1 cut(s)	207
HpyAV	CCTTC	2 cut(s)	705, 842
HpyCH4III	ACNGT	2 cut(s)	649, 910
HpyCH4IV	ACGT	2 cut(s)	209, 282
HpyF10VI	GCNNNNNNNGC	3 cut(s)	76, 85, 478
HpyF3I	CTNAG	3 cut(s)	6, 18, 171
HpySE526I	ACGT	2 cut(s)	209, 282
Hsp92II	CATG	2 cut(s)	40, 541
Kzo9I	GATC	2 cut(s)	714, 937
LmnI	GCTCC	4 cut(s)	199, 670, 701, 979
Lsp1109I	GCAGC	2 cut(s)	151, 154
LweI	GCATC	5 cut(s)	329, 436, 447, 760, 874
MaeI	CTAG	1 cut(s)	231
MaeII	ACGT	2 cut(s)	209, 282
MaeIII	GTNAC	3 cut(s)	278, 836, 999
MalI	GATC	2 cut(s)	716, 939
MbiI	CCGCTC	1 cut(s)	202
MboI	GATC	2 cut(s)	714, 937
MboII	GAAGA	4 cut(s)	103, 537, 829, 893
MflI	RGATCY	2 cut(s)	714, 937
MhlI	GDGCHC	2 cut(s)	90, 667
MluCI	AATT	6 cut(s)	424, 594, 626, 751, 808, 1007
MlyI	GAGTC	3 cut(s)	236, 320, 943
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	7 cut(s)	100, 256, 259, 263, 702, 821, 824
Mph1103I	ATGCAT	2 cut(s)	539, 889
MseI	TTAA	2 cut(s)	630, 1010
MslI	CAYNNNNRTG	1 cut(s)	532
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	1 cut(s)	845
MvaI	CCWGG	1 cut(s)	845
MwoI	GCNNNNNNNGC	3 cut(s)	76, 85, 478
NdeI	CATATG	1 cut(s)	970
NdeII	GATC	2 cut(s)	714, 937
NlaIII	CATG	2 cut(s)	40, 541
NlaIV	GGNNCC	1 cut(s)	12
NmuCI	GTSAC	1 cut(s)	278
NsiI	ATGCAT	2 cut(s)	539, 889
NspI	RCATGY	1 cut(s)	541
NspV	TTCGAA	1 cut(s)	964
PaeI	GCATGC	1 cut(s)	541
PfeI	GAWTC	5 cut(s)	108, 133, 500, 524, 566
PfoI	TCCNGGA	1 cut(s)	843
PkrI	GCNGC	2 cut(s)	166, 169
PleI	GAGTC	3 cut(s)	235, 319, 943
PmaCI	CACGTG	1 cut(s)	210
PmlI	CACGTG	1 cut(s)	210
PpsI	GAGTC	3 cut(s)	235, 319, 943
Ppu21I	YACGTR	1 cut(s)	210
PpuMI	RGGWCCY	1 cut(s)	10
Psp124BI	GAGCTC	1 cut(s)	667
Psp5II	RGGWCCY	1 cut(s)	10
Psp6I	CCWGG	1 cut(s)	843
PspCI	CACGTG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	843
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	3 cut(s)	10, 736, 897
PspPPI	RGGWCCY	1 cut(s)	10
PstI	CTGCAG	1 cut(s)	934
PsuI	RGATCY	2 cut(s)	714, 937
RsaI	GTAC	1 cut(s)	656
RsaNI	GTAC	1 cut(s)	655
RseI	CAYNNNNRTG	1 cut(s)	532
SacI	GAGCTC	1 cut(s)	667
SaqAI	TTAA	2 cut(s)	630, 1010
SatI	GCNGC	2 cut(s)	165, 168
Sau3AI	GATC	2 cut(s)	714, 937
Sau96I	GGNCC	3 cut(s)	10, 736, 897
ScaI	AGTACT	1 cut(s)	656
SchI	GAGTC	3 cut(s)	236, 320, 943
ScrFI	CCNGG	1 cut(s)	845
SduI	GDGCHC	2 cut(s)	90, 667
SfaNI	GCATC	5 cut(s)	329, 436, 447, 760, 874
SfcI	CTRYAG	3 cut(s)	658, 909, 930
SfuI	TTCGAA	1 cut(s)	964
SinI	GGWCC	3 cut(s)	10, 736, 897
SmiMI	CAYNNNNRTG	1 cut(s)	532
SphI	GCATGC	1 cut(s)	541
Sse9I	AATT	6 cut(s)	424, 594, 626, 751, 808, 1007
SsiI	CCGC	4 cut(s)	70, 202, 260, 472
SspMI	CTAG	1 cut(s)	231
SstI	GAGCTC	1 cut(s)	667
StyD4I	CCNGG	1 cut(s)	843
TaaI	ACNGT	2 cut(s)	649, 910
TaiI	ACGT	2 cut(s)	212, 285
TaqI	TCGA	1 cut(s)	964
TasI	AATT	6 cut(s)	424, 594, 626, 751, 808, 1007
TatI	WGTACW	1 cut(s)	654
TfiI	GAWTC	5 cut(s)	108, 133, 500, 524, 566
Tru1I	TTAA	2 cut(s)	630, 1010
Tru9I	TTAA	2 cut(s)	630, 1010
TscAI	CASTG	4 cut(s)	52, 524, 652, 806
TseFI	GTSAC	1 cut(s)	278
TseI	GCWGC	2 cut(s)	164, 167
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	1 cut(s)	591
TspRI	CASTG	4 cut(s)	52, 524, 652, 806
VpaK11BI	GGWCC	3 cut(s)	10, 736, 897
XagI	CCTNNNNNAGG	1 cut(s)	696
XapI	RAATTY	2 cut(s)	626, 751
XceI	RCATGY	1 cut(s)	541
XspI	CTAG	1 cut(s)	231
ZrmI	AGTACT	1 cut(s)	656
Zsp2I	ATGCAT	2 cut(s)	539, 889

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.