Rmu_sc0000480.1_g000001

protein trichome birefringence-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000480.1
Physical Location & Seq
Forward (+)
857 .. 3710
2854 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000480.1_g000001.1.cds

Sequence Viewer

Length: 1365 bp
atgtctaaggacccatctgagcctgaccttgaagccatgccattcactgaagctttcaagaagttcaagcggttgaagctgtttgagccctctttgggggtcttgggattcttctttgtgtctctgtgtgtgattctgtgcttcttttacttggattacagagctgttgctaaggggtttcggttctccggtcagtcggaccggttcacgtggttgcagagcaatgagtctagcaaggatgtcagggttgagtttcttggggaggagggaggtgtttgtgacgtgtttgatggggattgggtgtgggatgagtcataccctttgtatcagtccaatggatgcccctttttggatgatggctttaggtgtagtgagaatggccgtcctgatttgttttacacaaagtggagatggcaacccagaaattgcaacttgcccagatttgatgcaaagttgatgctggaaaaactgcgagacaagcgagtagtgtttgttggtgattccattggacgaaaccagtgggaatcactcctatgcatgctgtcttcggcagttcccaacaaggattcaatctatgaagtgaatggcaacccaattaccaagcacaaggggtttttggtgttcaaatttaaggactataactgcactgtggagtactacagagctccatttcttgtagtgcagagccgtcctccttcaggagcttcacaaaagatcagaacaactttgagattggaccaaatggattggaattctggaaagtggagagatgcagatatgctggttttcaacacaggacactggtggaattatgagaagacaataagagggggttgttacttccaggaaggggcagaagtaaagatggagatgagtgtagaagatgcgtatcacaggtccatagagactgtggtgcgatggatagatactgctgtagatccaaacaggactcgggttttctttcgaacatatgctcctgtgcatttcagaggtggtgattggaggaatggtggagcctgtcacctggaaacattgcctgcgctagcctcttcattggtgcctactgactcttggagtcaatacagaatagccaatgctgtgctatcagctttgtcaaatacatcaaaggcaatgaagttcaatgtgttaaatgtaacgcaattgactgctcggagaaaagatggacattcatctttgtactatctgggtcctaaacttagccctgcctctattcgccggcaagattgcagccattggtgtctgcctggagtcccagatacatggaatgaactactctatgcactgtttttaaagcatgagaggactagtacagtgaatgcatcaacttatagcgcgccagtatga

Protein Analysis

454

Amino Acids

52.31

Weight (kDa)

8.48

Isoelectric Point (pI)

48.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1057
AccII CGCG 1 cut(s) 1355
AciI CCGC 1 cut(s) 70
AclWI GGATC 1 cut(s) 932
AcoI YGGCCR 1 cut(s) 379
AcsI RAATTY 2 cut(s) 626, 751
AcuI CTGAAG 2 cut(s) 69, 681
AcvI CACGTG 1 cut(s) 210
AdeI CACNNNGTG 1 cut(s) 405
AfaI GTAC 3 cut(s) 656, 1199, 1330
AfiI CCNNNNNNNGG 5 cut(s) 95, 96, 349, 698, 850
AflIII ACRYGT 1 cut(s) 282
AgeI ACCGGT 1 cut(s) 201
AgsI TTSAA 8 cut(s) 32, 58, 67, 76, 570, 625, 790, 1141
AhlI ACTAGT 1 cut(s) 1325
AjiI CACGTC 1 cut(s) 283
AjnI CCWGG 3 cut(s) 843, 1023, 1264
AloI GAACNNNNNNTCC 2 cut(s) 958, 990
AluBI AGCT 6 cut(s) 53, 79, 164, 665, 704, 1109
AluI AGCT 6 cut(s) 53, 79, 164, 665, 704, 1109
Alw21I GWGCWC 1 cut(s) 667
Alw26I GTCTC 3 cut(s) 126, 468, 899
AlwI GGATC 1 cut(s) 932
Ama87I CYCGRG 1 cut(s) 951
AoxI GGCC 1 cut(s) 379
ApeKI GCWGC 1 cut(s) 1248
ApoI RAATTY 2 cut(s) 626, 751
AsiGI ACCGGT 1 cut(s) 201
AspLEI GCGC 3 cut(s) 1042, 1355, 1357
AspS9I GGNCC 5 cut(s) 10, 199, 736, 897, 1208
AsuHPI GGTGA 3 cut(s) 509, 1007, 1013
AsuII TTCGAA 1 cut(s) 964
AsuNHI GCTAGC 1 cut(s) 1042
AvaI CYCGRG 1 cut(s) 951
AvaII GGWCC 5 cut(s) 10, 199, 736, 897, 1208
BaeI ACNNNNGTAYC 2 cut(s) 918, 951
BanI GGYRCC 1 cut(s) 1057
BanII GRGCYC 2 cut(s) 90, 667
BbrPI CACGTG 1 cut(s) 210
BbsI GAAGAC 2 cut(s) 537, 824
Bbv12I GWGCWC 1 cut(s) 667
BbvI GCAGC 1 cut(s) 1260
BccI CCATC 7 cut(s) 22, 284, 350, 405, 859, 912, 1175
BceAI ACGGC 2 cut(s) 366, 672
BciT130I CCWGG 3 cut(s) 845, 1025, 1266
BcoDI GTCTC 3 cut(s) 126, 468, 899
BcuI ACTAGT 1 cut(s) 1325
BfaI CTAG 3 cut(s) 231, 1043, 1326
BfmI CTRYAG 2 cut(s) 658, 933
BisI GCNGC 1 cut(s) 1249
BlsI GCNGC 1 cut(s) 1250
BmcAI AGTACT 1 cut(s) 656
Bme1390I CCNGG 3 cut(s) 845, 1025, 1266
Bme18I GGWCC 5 cut(s) 10, 199, 736, 897, 1208
BmeT110I CYCGRG 1 cut(s) 951
BmgBI CACGTC 1 cut(s) 283
BmgT120I GGNCC 5 cut(s) 10, 199, 736, 897, 1208
BmiI GGNNCC 4 cut(s) 12, 1015, 1059, 1209
BmrFI CCNGG 3 cut(s) 845, 1025, 1266
BmsI GCATC 6 cut(s) 329, 436, 447, 760, 874, 1349
BmtI GCTAGC 1 cut(s) 1046
BpiI GAAGAC 2 cut(s) 537, 824
BplI GAGNNNNNCTC 2 cut(s) 676, 708
BpmI CTGGAG 1 cut(s) 1287
Bpu10I CCTNAGC 1 cut(s) 171
Bpu14I TTCGAA 1 cut(s) 964
BsaAI YACGTR 1 cut(s) 210
BsaBI GATNNNNATC 1 cut(s) 888
BsaWI WCCGGW 2 cut(s) 188, 201
BsaXI ACNNNNNCTCC 4 cut(s) 958, 988, 994, 1024
Bsc4I CCNNNNNNNGG 5 cut(s) 95, 96, 349, 698, 850
Bse118I RCCGGY 2 cut(s) 201, 1236
Bse1I ACTGG 3 cut(s) 517, 806, 1358
Bse3DI GCAATG 3 cut(s) 229, 1031, 1137
Bse8I GATNNNNATC 1 cut(s) 888
BseBI CCWGG 3 cut(s) 845, 1025, 1266
BseGI GGATG 4 cut(s) 244, 313, 344, 358
BseJI GATNNNNATC 1 cut(s) 888
BseLI CCNNNNNNNGG 5 cut(s) 95, 96, 349, 698, 850
BseMI GCAATG 3 cut(s) 229, 1031, 1137
BseMII CTCAG 1 cut(s) 9
BseNI ACTGG 3 cut(s) 517, 806, 1358
BsePI GCGCGC 1 cut(s) 1353
BseRI GAGGAG 1 cut(s) 278
BseXI GCAGC 1 cut(s) 1260
BsgI GTGCAG 2 cut(s) 628, 701
Bsh1236I CGCG 1 cut(s) 1355
BshFI GGCC 1 cut(s) 381
BshNI GGYRCC 1 cut(s) 1057
BshTI ACCGGT 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 667
BsiHKCI CYCGRG 1 cut(s) 951
BsiSI CCGG 3 cut(s) 189, 202, 1237
BslFI GGGAC 1 cut(s) 1256
BslI CCNNNNNNNGG 5 cut(s) 95, 96, 349, 698, 850
BsmAI GTCTC 3 cut(s) 126, 468, 899
BsmFI GGGAC 1 cut(s) 1256
BsmI GAATGC 1 cut(s) 1342
BsnI GGCC 1 cut(s) 381
BsoBI CYCGRG 1 cut(s) 951
Bsp119I TTCGAA 1 cut(s) 964
Bsp1286I GDGCHC 2 cut(s) 90, 667
Bsp143I GATC 2 cut(s) 714, 937
BspACI CCGC 1 cut(s) 70
BspANI GGCC 1 cut(s) 381
BspCNI CTCAG 1 cut(s) 10
BspFNI CGCG 1 cut(s) 1355
BspLI GGNNCC 4 cut(s) 12, 1015, 1059, 1209
BspOI GCTAGC 1 cut(s) 1046
BspPI GGATC 1 cut(s) 932
BspT104I TTCGAA 1 cut(s) 964
BspT107I GGYRCC 1 cut(s) 1057
BsrDI GCAATG 3 cut(s) 229, 1031, 1137
BsrFI RCCGGY 2 cut(s) 201, 1236
BsrI ACTGG 3 cut(s) 517, 806, 1358
BssAI RCCGGY 2 cut(s) 201, 1236
BssHII GCGCGC 1 cut(s) 1353
BssMI GATC 2 cut(s) 714, 937
Bst2UI CCWGG 3 cut(s) 845, 1025, 1266
Bst4CI ACNGT 4 cut(s) 649, 910, 1305, 1333
Bst6I CTCTTC 1 cut(s) 1054
BstBAI YACGTR 1 cut(s) 210
BstBI TTCGAA 1 cut(s) 964
BstC8I GCNNGC 5 cut(s) 539, 1038, 1044, 1238, 1355
BstDEI CTNAG 4 cut(s) 6, 18, 171, 1217
BstENI CCTNNNNNAGG 1 cut(s) 696
BstF5I GGATG 4 cut(s) 244, 313, 344, 358
BstFNI CGCG 1 cut(s) 1355
BstHHI GCGC 3 cut(s) 1042, 1355, 1357
BstKTI GATC 2 cut(s) 717, 940
BstMAI GTCTC 3 cut(s) 126, 468, 899
BstMBI GATC 2 cut(s) 714, 937
BstMWI GCNNNNNNNGC 3 cut(s) 76, 85, 478
BstNI CCWGG 3 cut(s) 845, 1025, 1266
BstNSI RCATGY 1 cut(s) 541
BstSCI CCNGG 3 cut(s) 843, 1023, 1264
BstSFI CTRYAG 2 cut(s) 658, 933
BstUI CGCG 1 cut(s) 1355
BstV1I GCAGC 1 cut(s) 1260
BstV2I GAAGAC 2 cut(s) 537, 824
BstX2I RGATCY 1 cut(s) 937
BstXI CCANNNNNNTGG 1 cut(s) 1281
BstYI RGATCY 1 cut(s) 937
BsuRI GGCC 1 cut(s) 381
BtgZI GCGATG 1 cut(s) 931
BtrI CACGTC 1 cut(s) 283
BtsCI GGATG 4 cut(s) 244, 313, 344, 358
BtsIMutI CAGTG 6 cut(s) 45, 524, 645, 799, 1301, 1338
Cac8I GCNNGC 5 cut(s) 539, 1038, 1044, 1238, 1355
CfoI GCGC 3 cut(s) 1042, 1355, 1357
Cfr10I RCCGGY 2 cut(s) 201, 1236
Cfr13I GGNCC 5 cut(s) 10, 199, 736, 897, 1208
CpoI CGGWCCG 1 cut(s) 199
Csp6I GTAC 3 cut(s) 655, 1198, 1329
CspAI ACCGGT 1 cut(s) 201
CspI CGGWCCG 1 cut(s) 199
CviAII CATG 4 cut(s) 37, 538, 1281, 1316
CviQI GTAC 3 cut(s) 655, 1198, 1329
DdeI CTNAG 4 cut(s) 6, 18, 171, 1217
DpnI GATC 2 cut(s) 716, 939
DpnII GATC 2 cut(s) 714, 937
DraI TTTAAA 1 cut(s) 1311
DraIII CACNNNGTG 1 cut(s) 405
EaeI YGGCCR 1 cut(s) 379
Eam1104I CTCTTC 1 cut(s) 1054
EarI CTCTTC 1 cut(s) 1054
Ecl136II GAGCTC 1 cut(s) 665
Eco24I GRGCYC 2 cut(s) 90, 667
Eco47I GGWCC 5 cut(s) 10, 199, 736, 897, 1208
Eco53kI GAGCTC 1 cut(s) 665
Eco57I CTGAAG 2 cut(s) 69, 681
Eco72I CACGTG 1 cut(s) 210
Eco88I CYCGRG 1 cut(s) 951
EcoICRI GAGCTC 1 cut(s) 665
EcoNI CCTNNNNNAGG 1 cut(s) 696
EcoO109I RGGNCCY 2 cut(s) 10, 1208
EcoRI GAATTC 1 cut(s) 751
EcoRII CCWGG 3 cut(s) 843, 1023, 1264
EcoT22I ATGCAT 2 cut(s) 539, 1342
EcoT38I GRGCYC 2 cut(s) 90, 667
FaeI CATG 4 cut(s) 40, 541, 1284, 1319
FaqI GGGAC 1 cut(s) 1256
FatI CATG 4 cut(s) 36, 537, 1280, 1315
FauNDI CATATG 1 cut(s) 970
Fnu4HI GCNGC 1 cut(s) 1249
FokI GGATG 4 cut(s) 251, 320, 351, 365
FriOI GRGCYC 2 cut(s) 90, 667
Fsp4HI GCNGC 1 cut(s) 1249
FspBI CTAG 3 cut(s) 231, 1043, 1326
GlaI GCGC 3 cut(s) 1041, 1354, 1356
GluI GCNGC 1 cut(s) 1249
GsuI CTGGAG 1 cut(s) 1287
HaeIII GGCC 1 cut(s) 381
HapII CCGG 3 cut(s) 189, 202, 1237
HhaI GCGC 3 cut(s) 1042, 1355, 1357
Hin1II CATG 4 cut(s) 40, 541, 1284, 1319
Hin6I GCGC 3 cut(s) 1040, 1353, 1355
HinP1I GCGC 3 cut(s) 1040, 1353, 1355
HindIII AAGCTT 1 cut(s) 51
HpaII CCGG 3 cut(s) 189, 202, 1237
HphI GGTGA 3 cut(s) 509, 1007, 1013
Hpy166II GTNNAC 1 cut(s) 207
Hpy188I TCNGA 5 cut(s) 19, 199, 719, 989, 1173
Hpy188III TCNNGA 4 cut(s) 58, 386, 699, 756
Hpy8I GTNNAC 1 cut(s) 207
HpyAV CCTTC 2 cut(s) 705, 842
HpyCH4III ACNGT 4 cut(s) 649, 910, 1305, 1333
HpyCH4IV ACGT 2 cut(s) 209, 282
HpyF10VI GCNNNNNNNGC 3 cut(s) 76, 85, 478
HpyF3I CTNAG 4 cut(s) 6, 18, 171, 1217
HpySE526I ACGT 2 cut(s) 209, 282
Hsp92II CATG 4 cut(s) 40, 541, 1284, 1319
HspAI GCGC 3 cut(s) 1040, 1353, 1355
KroI GCCGGC 1 cut(s) 1236
KroNI GCCGGC 1 cut(s) 1238
Kzo9I GATC 2 cut(s) 714, 937
LmnI GCTCC 4 cut(s) 670, 701, 979, 1013
Lsp1109I GCAGC 1 cut(s) 1260
LweI GCATC 6 cut(s) 329, 436, 447, 760, 874, 1349
MaeI CTAG 3 cut(s) 231, 1043, 1326
MaeII ACGT 2 cut(s) 209, 282
MaeIII GTNAC 4 cut(s) 278, 836, 1019, 1153
MalI GATC 2 cut(s) 716, 939
MboI GATC 2 cut(s) 714, 937
MboII GAAGA 5 cut(s) 103, 537, 829, 893, 1041
MfeI CAATTG 1 cut(s) 1160
MflI RGATCY 1 cut(s) 937
MhlI GDGCHC 2 cut(s) 90, 667
MluCI AATT 6 cut(s) 424, 594, 626, 751, 808, 1160
MlyI GAGTC 6 cut(s) 236, 320, 943, 1061, 1084, 1278
MmeI TCCRAC 1 cut(s) 177
Mph1103I ATGCAT 2 cut(s) 539, 1342
MroNI GCCGGC 1 cut(s) 1236
MseI TTAA 3 cut(s) 630, 1148, 1310
MslI CAYNNNNRTG 1 cut(s) 532
MspI CCGG 3 cut(s) 189, 202, 1237
MspR9I CCNGG 3 cut(s) 845, 1025, 1266
MunI CAATTG 1 cut(s) 1160
Mva1269I GAATGC 1 cut(s) 1342
MvaI CCWGG 3 cut(s) 845, 1025, 1266
MvnI CGCG 1 cut(s) 1355
MwoI GCNNNNNNNGC 3 cut(s) 76, 85, 478
NaeI GCCGGC 1 cut(s) 1238
NdeI CATATG 1 cut(s) 970
NdeII GATC 2 cut(s) 714, 937
NgoMIV GCCGGC 1 cut(s) 1236
NheI GCTAGC 1 cut(s) 1042
NlaIII CATG 4 cut(s) 40, 541, 1284, 1319
NlaIV GGNNCC 4 cut(s) 12, 1015, 1059, 1209
NmuCI GTSAC 2 cut(s) 278, 1019
NsiI ATGCAT 2 cut(s) 539, 1342
NspI RCATGY 1 cut(s) 541
NspV TTCGAA 1 cut(s) 964
PaeI GCATGC 1 cut(s) 541
PauI GCGCGC 1 cut(s) 1353
PctI GAATGC 1 cut(s) 1342
PdiI GCCGGC 1 cut(s) 1238
PfeI GAWTC 5 cut(s) 108, 133, 500, 524, 566
PfoI TCCNGGA 1 cut(s) 843
PinAI ACCGGT 1 cut(s) 201
PkrI GCNGC 1 cut(s) 1250
PleI GAGTC 6 cut(s) 235, 319, 943, 1061, 1083, 1277
PmaCI CACGTG 1 cut(s) 210
PmlI CACGTG 1 cut(s) 210
PpsI GAGTC 6 cut(s) 235, 319, 943, 1061, 1083, 1277
Ppu21I YACGTR 1 cut(s) 210
PpuMI RGGWCCY 2 cut(s) 10, 1208
Psp124BI GAGCTC 1 cut(s) 667
Psp5II RGGWCCY 2 cut(s) 10, 1208
Psp6I CCWGG 3 cut(s) 843, 1023, 1264
PspCI CACGTG 1 cut(s) 210
PspGI CCWGG 3 cut(s) 843, 1023, 1264
PspN4I GGNNCC 4 cut(s) 12, 1015, 1059, 1209
PspPI GGNCC 5 cut(s) 10, 199, 736, 897, 1208
PspPPI RGGWCCY 2 cut(s) 10, 1208
PsuI RGATCY 1 cut(s) 937
PteI GCGCGC 1 cut(s) 1353
RsaI GTAC 3 cut(s) 656, 1199, 1330
RsaNI GTAC 3 cut(s) 655, 1198, 1329
RseI CAYNNNNRTG 1 cut(s) 532
Rsr2I CGGWCCG 1 cut(s) 199
RsrII CGGWCCG 1 cut(s) 199
SacI GAGCTC 1 cut(s) 667
SaqAI TTAA 3 cut(s) 630, 1148, 1310
SatI GCNGC 1 cut(s) 1249
Sau3AI GATC 2 cut(s) 714, 937
Sau96I GGNCC 5 cut(s) 10, 199, 736, 897, 1208
ScaI AGTACT 1 cut(s) 656
SchI GAGTC 6 cut(s) 236, 320, 943, 1061, 1084, 1278
ScrFI CCNGG 3 cut(s) 845, 1025, 1266
SduI GDGCHC 2 cut(s) 90, 667
SfaNI GCATC 6 cut(s) 329, 436, 447, 760, 874, 1349
SfcI CTRYAG 2 cut(s) 658, 933
SfuI TTCGAA 1 cut(s) 964
SinI GGWCC 5 cut(s) 10, 199, 736, 897, 1208
SmiMI CAYNNNNRTG 1 cut(s) 532
SpeI ACTAGT 1 cut(s) 1325
SphI GCATGC 1 cut(s) 541
Sse9I AATT 6 cut(s) 424, 594, 626, 751, 808, 1160
SsiI CCGC 1 cut(s) 70
SspMI CTAG 3 cut(s) 231, 1043, 1326
SstI GAGCTC 1 cut(s) 667
StyD4I CCNGG 3 cut(s) 843, 1023, 1264
TaaI ACNGT 4 cut(s) 649, 910, 1305, 1333
TaiI ACGT 2 cut(s) 212, 285
TaqI TCGA 1 cut(s) 964
TasI AATT 6 cut(s) 424, 594, 626, 751, 808, 1160
TatI WGTACW 3 cut(s) 654, 1197, 1328
TfiI GAWTC 5 cut(s) 108, 133, 500, 524, 566
Tru1I TTAA 3 cut(s) 630, 1148, 1310
Tru9I TTAA 3 cut(s) 630, 1148, 1310
TscAI CASTG 6 cut(s) 52, 524, 652, 806, 1308, 1338
TseFI GTSAC 2 cut(s) 278, 1019
TseI GCWGC 1 cut(s) 1248
Tsp45I GTSAC 2 cut(s) 278, 1019
TspDTI ATGAA 5 cut(s) 591, 1041, 1148, 1179, 1302
TspRI CASTG 6 cut(s) 52, 524, 652, 806, 1308, 1338
VpaK11BI GGWCC 5 cut(s) 10, 199, 736, 897, 1208
XagI CCTNNNNNAGG 1 cut(s) 696
XapI RAATTY 2 cut(s) 626, 751
XceI RCATGY 1 cut(s) 541
XcmI CCANNNNNNNNNTGG 1 cut(s) 907
XspI CTAG 3 cut(s) 231, 1043, 1326
ZrmI AGTACT 1 cut(s) 656
Zsp2I ATGCAT 2 cut(s) 539, 1342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.