Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008699

Physical Location & Seq

Genomic Coordinates Forward (+)

6430486 .. 6433004

Gene Structure 2519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G19160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

ATGTCGAAGAACCCATCTCAGGAAGAAGATGAAGCCATGCCAATCTCTGAAGTAGTAATAAAGAGATTCAAGCGTTTAAGGCTCGTGTTCGAGCCATCACTAGGAGTCTTGGGTTTTTTCTTGGTGGGTTTGTGTTTAGTCTTCAGCTTCTTCTACCTCGATTACAGAACCGTGGCTAAAACTAAAAGTCATGACTTTTCGGATCAATCGGAGAGATTCCTTTGGCTCAAGGAGCTCGATGGGTTTGAAGTTAACAACACCAAAGTTGGGTTTCTTGAAGAGAGTGGGAATGGTTGTGATTTGTTCAATGGGAAATGGGTTTGGGACGAATCGTATCCCTTGTATCAGTCTAAAGATTGTACCTTTATTGATGAAGGATTCAGATGCACTGAGTTTGGGAGACCTGATTTGTTCTATACTAAGTGGAGATGGCAACCTAACCATTGTGATTTGCCCAGATTTGATGCTAAGTTGATGTTGGAGAAGCTAAGGAACAAGCGGCTAGTGTTTGTAGGAGACTCAATTGGAAGAAACCAATGGGAGTCTCTTCTTTGTATGCTAGCTTCTGCAATCAGTAACAAGAATTTGGTTTATGAAGTGAACAATAGACCCATCACAAAGCACATGGGCTTCTTTGTGTTCAGGTTTCATGACTACAATTGCACTGTTGAATACTATAGAGCACCGTTTTTGGTTCTTCAAAGCCGGCCACCTGAAGGATCACCAGAGAAGGTAAAGACCACTCTTAAGCTAGAGACGATGGAATGGACTGCTGATAAGTGGAGAGATGCGGATATATTAGTGTTTAACACGGGTCATTGGTGGAACTATGAGAAAACTATTCGCGGAGGTTGTTACTTTCAAGAAGGAGAAAAAGTAAGAATGAGAATGAAGATAGAGCATGCGTATAGACGAGCTATGAAGACTGTAATGAAATGGATACAAGAAGAGGTTGATGCAAACAAGACACAGGTTTTCTTTCGGACATTTGCCCCTGTGCATTTCAGGGGAGGAGATTGGAGAACTGGAGGAACATGTCATATGGAGACACTGCCTGATTTTGGAGCTTCTCTGGTTCCAGCAGAGACATGGGATCATATAAAGCTCCTTCAAGATGTCTTGTCTTCGTCTCTTTACTACTCGAACATATCAGAGACGGTTAAACTGAAAGTGTTGAACATAACAGCCATGGCTGCTCAAAGAAACGATGGTCACCCATCACTGTACTACCTGGGCTTGGCTGGTCCTGCGCCATTCCACAGGCAAGACTGCAGCCATTGGTGTCTCCCTGGAGTTCCTGATTCGTGGAATGAGCTTCTTTATGCATTGTTTCTAAAGCATGAAGGCTATTCAAGTCCAAGATCAAACAATAGCGATACAGACAACTTTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0007623 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048511 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

464

Amino Acids

54.22

Weight (kDa)

6.68

Isoelectric Point (pI)

49.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	98 - 150	7.6e-23	PMR5 N terminal Domain
PC-Esterase	PF13839	151 - 442	2.7e-101	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06080 AT3G06080 AT5G19160 AT5G19160
fragaria_vesca	FvH4_4g14780 FvH4_4g14780 FvH4_4g14780
malus_domestica	MD13G1185400.v1.1 MD16G1186300.v1.1
prunus_persica	Prupe.1G153100_v2.0.a1 Prupe.1G153100_v2.0.a1 Prupe.1G153100_v2.0.a1
pyrus_communis	pycom13g15990 pycom16g15590
rosa_chinensis	RchiOBHm_Chr4g0417821
rosa_laevigata	RLG00000007899
rosa_multiflora	Rmu_sc0000480.1_g000001 Rmu_sc0018885.1_g000003
rosa_roxburghii	Rroxscaffold_5G00361240
rosa_rugosa	Rorug04G0149300
rosa_samantha	Rh4CG222600 Rh4DG209600
rosa_wichuraiana	Rw4G017950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	846
AciI	CCGC	3 cut(s)	499, 791, 846
AclWI	GGATC	3 cut(s)	210, 727, 1101
AcoI	YGGCCR	1 cut(s)	707
AcsI	RAATTY	1 cut(s)	583
AcuI	CTGAAG	3 cut(s)	69, 127, 735
AfaI	GTAC	2 cut(s)	361, 1226
AfiI	CCNNNNNNNGG	6 cut(s)	19, 101, 267, 716, 1061, 1237
AflII	CTTAAG	1 cut(s)	746
AflIII	ACRYGT	1 cut(s)	1034
AjnI	CCWGG	2 cut(s)	1230, 1288
AluBI	AGCT	9 cut(s)	147, 235, 487, 563, 751, 917, 1067, 1105, 1315
AluI	AGCT	9 cut(s)	147, 235, 487, 563, 751, 917, 1067, 1105, 1315
Alw21I	GWGCWC	2 cut(s)	237, 685
Alw26I	GTCTC	9 cut(s)	394, 510, 549, 749, 1040, 1079, 1134, 1148, 1289
AlwI	GGATC	3 cut(s)	210, 727, 1101
AoxI	GGCC	1 cut(s)	707
ApeKI	GCWGC	2 cut(s)	1193, 1272
ApoI	RAATTY	1 cut(s)	583
AspLEI	GCGC	1 cut(s)	1252
AspS9I	GGNCC	1 cut(s)	1244
AsuHPI	GGTGA	2 cut(s)	714, 1205
AsuNHI	GCTAGC	1 cut(s)	559
AvaII	GGWCC	1 cut(s)	1244
BanII	GRGCYC	1 cut(s)	237
BarI	GAAGNNNNNNTAC	2 cut(s)	547, 579
BauI	CACGAG	1 cut(s)	83
BbsI	GAAGAC	3 cut(s)	133, 929, 1116
Bbv12I	GWGCWC	2 cut(s)	237, 685
BbvI	GCAGC	2 cut(s)	1180, 1284
BccI	CCATC	8 cut(s)	22, 103, 233, 423, 620, 754, 1202, 1225
BciT130I	CCWGG	2 cut(s)	1232, 1290
BciVI	GTATCC	2 cut(s)	345, 933
BcoDI	GTCTC	9 cut(s)	394, 510, 549, 749, 1040, 1079, 1134, 1148, 1289
BfaI	CTAG	4 cut(s)	101, 503, 560, 752
BfmI	CTRYAG	2 cut(s)	676, 1270
BfrI	CTTAAG	1 cut(s)	746
BfuI	GTATCC	2 cut(s)	345, 933
BisI	GCNGC	3 cut(s)	500, 1194, 1273
BlsI	GCNGC	3 cut(s)	501, 1195, 1274
Bme1390I	CCNGG	2 cut(s)	1232, 1290
Bme18I	GGWCC	1 cut(s)	1244
BmgT120I	GGNCC	1 cut(s)	1244
BmiI	GGNNCC	1 cut(s)	1077
BmrFI	CCNGG	2 cut(s)	1232, 1290
BmsI	GCATC	4 cut(s)	374, 454, 778, 946
BmtI	GCTAGC	1 cut(s)	563
BpiI	GAAGAC	3 cut(s)	133, 929, 1116
BpmI	CTGGAG	2 cut(s)	1047, 1311
Bpu10I	CCTNAGC	1 cut(s)	488
BpuEI	CTTGAG	1 cut(s)	212
BsaI	GGTCTC	1 cut(s)	394
BsaJI	CCNNGG	4 cut(s)	171, 1188, 1231, 1288
BsaXI	ACNNNNNCTCC	2 cut(s)	861, 891
Bsc4I	CCNNNNNNNGG	6 cut(s)	19, 101, 267, 716, 1061, 1237
Bse118I	RCCGGY	1 cut(s)	705
Bse1I	ACTGG	1 cut(s)	1030
BseBI	CCWGG	2 cut(s)	1232, 1290
BseDI	CCNNGG	4 cut(s)	171, 1188, 1231, 1288
BseLI	CCNNNNNNNGG	6 cut(s)	19, 101, 267, 716, 1061, 1237
BseMII	CTCAG	2 cut(s)	32, 381
BseNI	ACTGG	1 cut(s)	1030
BseRI	GAGGAG	1 cut(s)	1026
BseXI	GCAGC	2 cut(s)	1180, 1284
Bsh1236I	CGCG	1 cut(s)	846
BshFI	GGCC	1 cut(s)	709
BsiHKAI	GWGCWC	2 cut(s)	237, 685
BsiSI	CCGG	1 cut(s)	706
BslFI	GGGAC	1 cut(s)	338
BslI	CCNNNNNNNGG	6 cut(s)	19, 101, 267, 716, 1061, 1237
BsmAI	GTCTC	9 cut(s)	394, 510, 549, 749, 1040, 1079, 1134, 1148, 1289
BsmBI	CGTCTC	3 cut(s)	749, 1134, 1148
BsmFI	GGGAC	1 cut(s)	338
BsnI	GGCC	1 cut(s)	709
Bso31I	GGTCTC	1 cut(s)	394
Bsp1286I	GDGCHC	2 cut(s)	237, 685
Bsp143I	GATC	4 cut(s)	202, 719, 1093, 1361
Bsp19I	CCATGG	1 cut(s)	1188
BspACI	CCGC	3 cut(s)	499, 791, 846
BspANI	GGCC	1 cut(s)	709
BspCNI	CTCAG	2 cut(s)	31, 382
BspFNI	CGCG	1 cut(s)	846
BspHI	TCATGA	2 cut(s)	190, 649
BspLI	GGNNCC	1 cut(s)	1077
BspMAI	CTGCAG	1 cut(s)	1274
BspOI	GCTAGC	1 cut(s)	563
BspPI	GGATC	3 cut(s)	210, 727, 1101
BspTI	CTTAAG	1 cut(s)	746
BspTNI	GGTCTC	1 cut(s)	394
BsrFI	RCCGGY	1 cut(s)	705
BsrI	ACTGG	1 cut(s)	1030
BssAI	RCCGGY	1 cut(s)	705
BssECI	CCNNGG	4 cut(s)	171, 1188, 1231, 1288
BssMI	GATC	4 cut(s)	202, 719, 1093, 1361
BssSI	CACGAG	1 cut(s)	83
BssT1I	CCWWGG	1 cut(s)	1188
Bst2BI	CACGAG	1 cut(s)	83
Bst2UI	CCWGG	2 cut(s)	1232, 1290
Bst4CI	ACNGT	6 cut(s)	172, 667, 687, 928, 1159, 1224
Bst6I	CTCTTC	3 cut(s)	273, 552, 942
BstAFI	CTTAAG	1 cut(s)	746
BstC8I	GCNNGC	3 cut(s)	561, 707, 903
BstDEI	CTNAG	5 cut(s)	18, 390, 420, 468, 488
BstDSI	CCRYGG	2 cut(s)	171, 1188
BstEII	GGTNACC	1 cut(s)	1211
BstFNI	CGCG	1 cut(s)	846
BstHHI	GCGC	1 cut(s)	1252
BstKTI	GATC	4 cut(s)	205, 722, 1096, 1364
BstMAI	GTCTC	9 cut(s)	394, 510, 549, 749, 1040, 1079, 1134, 1148, 1289
BstMBI	GATC	4 cut(s)	202, 719, 1093, 1361
BstMWI	GCNNNNNNNGC	4 cut(s)	79, 232, 1193, 1247
BstNI	CCWGG	2 cut(s)	1232, 1290
BstNSI	RCATGY	2 cut(s)	905, 1038
BstPI	GGTNACC	1 cut(s)	1211
BstSCI	CCNGG	2 cut(s)	1230, 1288
BstSFI	CTRYAG	2 cut(s)	676, 1270
BstUI	CGCG	1 cut(s)	846
BstV1I	GCAGC	2 cut(s)	1180, 1284
BstV2I	GAAGAC	3 cut(s)	133, 929, 1116
BsuI	GTATCC	2 cut(s)	345, 933
BsuRI	GGCC	1 cut(s)	709
BtgI	CCRYGG	2 cut(s)	171, 1188
BtsI	GCAGTG	1 cut(s)	1049
BtsIMutI	CAGTG	4 cut(s)	387, 663, 1049, 1220
Cac8I	GCNNGC	3 cut(s)	561, 707, 903
CciI	TCATGA	2 cut(s)	190, 649
CfoI	GCGC	1 cut(s)	1252
Cfr10I	RCCGGY	1 cut(s)	705
Cfr13I	GGNCC	1 cut(s)	1244
Csp6I	GTAC	2 cut(s)	360, 1225
CviAII	CATG	9 cut(s)	37, 191, 625, 650, 902, 1035, 1089, 1189, 1340
CviQI	GTAC	2 cut(s)	360, 1225
DdeI	CTNAG	5 cut(s)	18, 390, 420, 468, 488
DpnI	GATC	4 cut(s)	204, 721, 1095, 1363
DpnII	GATC	4 cut(s)	202, 719, 1093, 1361
EaeI	YGGCCR	1 cut(s)	707
Eam1104I	CTCTTC	3 cut(s)	273, 552, 942
EarI	CTCTTC	3 cut(s)	273, 552, 942
Ecl136II	GAGCTC	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	1188
Eco24I	GRGCYC	1 cut(s)	237
Eco31I	GGTCTC	1 cut(s)	394
Eco47I	GGWCC	1 cut(s)	1244
Eco53kI	GAGCTC	1 cut(s)	235
Eco57I	CTGAAG	3 cut(s)	69, 127, 735
Eco91I	GGTNACC	1 cut(s)	1211
EcoICRI	GAGCTC	1 cut(s)	235
EcoO65I	GGTNACC	1 cut(s)	1211
EcoRII	CCWGG	2 cut(s)	1230, 1288
EcoT14I	CCWWGG	1 cut(s)	1188
EcoT22I	ATGCAT	1 cut(s)	1327
EcoT38I	GRGCYC	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	1188
Esp3I	CGTCTC	3 cut(s)	749, 1134, 1148
FaeI	CATG	9 cut(s)	40, 194, 628, 653, 905, 1038, 1092, 1192, 1343
FaqI	GGGAC	1 cut(s)	338
FatI	CATG	9 cut(s)	36, 190, 624, 649, 901, 1034, 1088, 1188, 1339
FauNDI	CATATG	1 cut(s)	1041
Fnu4HI	GCNGC	3 cut(s)	500, 1194, 1273
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	3 cut(s)	500, 1194, 1273
FspBI	CTAG	4 cut(s)	101, 503, 560, 752
GlaI	GCGC	1 cut(s)	1251
GluI	GCNGC	3 cut(s)	500, 1194, 1273
GsuI	CTGGAG	2 cut(s)	1047, 1311
HaeIII	GGCC	1 cut(s)	709
HapII	CCGG	1 cut(s)	706
HhaI	GCGC	1 cut(s)	1252
Hin1II	CATG	9 cut(s)	40, 194, 628, 653, 905, 1038, 1092, 1192, 1343
Hin6I	GCGC	1 cut(s)	1250
HinP1I	GCGC	1 cut(s)	1250
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	8 cut(s)	66, 105, 216, 329, 378, 518, 542, 1301
HpaI	GTTAAC	1 cut(s)	253
HpaII	CCGG	1 cut(s)	706
HphI	GGTGA	2 cut(s)	714, 1205
Hpy166II	GTNNAC	2 cut(s)	253, 601
Hpy188I	TCNGA	6 cut(s)	49, 202, 211, 383, 984, 1153
Hpy188III	TCNNGA	7 cut(s)	20, 191, 275, 650, 863, 1112, 1298
Hpy8I	GTNNAC	2 cut(s)	253, 601
HpyAV	CCTTC	6 cut(s)	368, 710, 724, 860, 1118, 1337
HpyCH4III	ACNGT	6 cut(s)	172, 667, 687, 928, 1159, 1224
HpyCH4V	TGCA	7 cut(s)	387, 569, 663, 959, 1000, 1272, 1325
HpyF10VI	GCNNNNNNNGC	4 cut(s)	79, 232, 1193, 1247
HpyF3I	CTNAG	5 cut(s)	18, 390, 420, 468, 488
Hsp92II	CATG	9 cut(s)	40, 194, 628, 653, 905, 1038, 1092, 1192, 1343
HspAI	GCGC	1 cut(s)	1250
KroI	GCCGGC	1 cut(s)	705
KroNI	GCCGGC	1 cut(s)	707
KspAI	GTTAAC	1 cut(s)	253
Kzo9I	GATC	4 cut(s)	202, 719, 1093, 1361
LmnI	GCTCC	3 cut(s)	232, 1064, 1110
Lsp1109I	GCAGC	2 cut(s)	1180, 1284
LweI	GCATC	4 cut(s)	374, 454, 778, 946
MaeI	CTAG	4 cut(s)	101, 503, 560, 752
MaeIII	GTNAC	3 cut(s)	575, 854, 1211
MalI	GATC	4 cut(s)	204, 721, 1095, 1363
MboI	GATC	4 cut(s)	202, 719, 1093, 1361
MfeI	CAATTG	2 cut(s)	522, 658
MhlI	GDGCHC	2 cut(s)	237, 685
MluCI	AATT	3 cut(s)	522, 583, 658
MlyI	GAGTC	3 cut(s)	114, 512, 551
MmeI	TCCRAC	1 cut(s)	459
MnlI	CCTC	5 cut(s)	167, 842, 943, 1004, 1022
Mph1103I	ATGCAT	1 cut(s)	1327
MroNI	GCCGGC	1 cut(s)	705
MseI	TTAA	5 cut(s)	77, 252, 747, 807, 1161
MspCI	CTTAAG	1 cut(s)	746
MspI	CCGG	1 cut(s)	706
MspR9I	CCNGG	2 cut(s)	1232, 1290
MunI	CAATTG	2 cut(s)	522, 658
MvaI	CCWGG	2 cut(s)	1232, 1290
MvnI	CGCG	1 cut(s)	846
MwoI	GCNNNNNNNGC	4 cut(s)	79, 232, 1193, 1247
NaeI	GCCGGC	1 cut(s)	707
NcoI	CCATGG	1 cut(s)	1188
NdeI	CATATG	1 cut(s)	1041
NdeII	GATC	4 cut(s)	202, 719, 1093, 1361
NgoMIV	GCCGGC	1 cut(s)	705
NheI	GCTAGC	1 cut(s)	559
NlaIII	CATG	9 cut(s)	40, 194, 628, 653, 905, 1038, 1092, 1192, 1343
NlaIV	GGNNCC	1 cut(s)	1077
NmuCI	GTSAC	1 cut(s)	1211
NsiI	ATGCAT	1 cut(s)	1327
NspI	RCATGY	2 cut(s)	905, 1038
PaeI	GCATGC	1 cut(s)	905
PagI	TCATGA	2 cut(s)	190, 649
PciI	ACATGT	1 cut(s)	1034
PdiI	GCCGGC	1 cut(s)	707
PfeI	GAWTC	5 cut(s)	66, 216, 329, 378, 1301
PkrI	GCNGC	3 cut(s)	501, 1195, 1274
PleI	GAGTC	3 cut(s)	113, 512, 550
PpsI	GAGTC	3 cut(s)	113, 512, 550
PscI	ACATGT	1 cut(s)	1034
Psp124BI	GAGCTC	1 cut(s)	237
Psp6I	CCWGG	2 cut(s)	1230, 1288
PspEI	GGTNACC	1 cut(s)	1211
PspGI	CCWGG	2 cut(s)	1230, 1288
PspN4I	GGNNCC	1 cut(s)	1077
PspPI	GGNCC	1 cut(s)	1244
PstI	CTGCAG	1 cut(s)	1274
RsaI	GTAC	2 cut(s)	361, 1226
RsaNI	GTAC	2 cut(s)	360, 1225
SacI	GAGCTC	1 cut(s)	237
SaqAI	TTAA	5 cut(s)	77, 252, 747, 807, 1161
SatI	GCNGC	3 cut(s)	500, 1194, 1273
Sau3AI	GATC	4 cut(s)	202, 719, 1093, 1361
Sau96I	GGNCC	1 cut(s)	1244
SchI	GAGTC	3 cut(s)	114, 512, 551
ScrFI	CCNGG	2 cut(s)	1232, 1290
SduI	GDGCHC	2 cut(s)	237, 685
SfaNI	GCATC	4 cut(s)	374, 454, 778, 946
SfcI	CTRYAG	2 cut(s)	676, 1270
SinI	GGWCC	1 cut(s)	1244
SmlI	CTYRAG	2 cut(s)	227, 746
SmoI	CTYRAG	2 cut(s)	227, 746
SphI	GCATGC	1 cut(s)	905
Sse9I	AATT	3 cut(s)	522, 583, 658
SsiI	CCGC	3 cut(s)	499, 791, 846
SspMI	CTAG	4 cut(s)	101, 503, 560, 752
SstI	GAGCTC	1 cut(s)	237
StyD4I	CCNGG	2 cut(s)	1230, 1288
StyI	CCWWGG	1 cut(s)	1188
TaaI	ACNGT	6 cut(s)	172, 667, 687, 928, 1159, 1224
TaqI	TCGA	5 cut(s)	5, 90, 159, 237, 1142
TasI	AATT	3 cut(s)	522, 583, 658
TatI	WGTACW	1 cut(s)	1224
TauI	GCSGC	1 cut(s)	502
TfiI	GAWTC	5 cut(s)	66, 216, 329, 378, 1301
Tru1I	TTAA	5 cut(s)	77, 252, 747, 807, 1161
Tru9I	TTAA	5 cut(s)	77, 252, 747, 807, 1161
TscAI	CASTG	4 cut(s)	394, 670, 1056, 1227
TseFI	GTSAC	1 cut(s)	1211
TseI	GCWGC	2 cut(s)	1193, 1272
Tsp45I	GTSAC	1 cut(s)	1211
TspDTI	ATGAA	8 cut(s)	45, 387, 609, 638, 905, 935, 947, 1356
TspRI	CASTG	4 cut(s)	394, 670, 1056, 1227
Vha464I	CTTAAG	1 cut(s)	746
VpaK11BI	GGWCC	1 cut(s)	1244
XapI	RAATTY	1 cut(s)	583
XceI	RCATGY	2 cut(s)	905, 1038
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1086
XspI	CTAG	4 cut(s)	101, 503, 560, 752
Zsp2I	ATGCAT	1 cut(s)	1327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.