Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0008699

Physical Location & Seq

Genomic Coordinates Reverse (-)

40442312 .. 40464683

Gene Structure 22372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG209600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGTCTAAGGACCCATCTGAGCCTGACCTTGAAGCCATGCCATTCACTGAAGCTTTCAAGAAGTTCAAGCGGTTGAAGCTGTTTGAGCCCTCTTTGGGGGTCTTGGGATTCTTCTTTGTGTCTCTGTGTGTGATTCTGTGCTTCTTTTACTTGGATTACAGAGCTGTTGCTAAGGGGTTTCGGTTCTCCGGTCAGTCGGAGCGGTTCACGTGGTTGCAGAGCAATGAGTCTAGCAAGGATGTCAGGGTTGAGTTTCTTGGGGAGGAGGGAGGTGTTTGTGACGTGTTTGATGGGGATTGGGTGTGGGATGAGTCATACCCTTTGTATCAGTCCAATGGATGCCCCTTTTTGGATGATGGCTTTAGGTGTAGTGAGAATGGCCGTCCTGATTTATTTTACACAAAGTGGAGATGGCAACCCAGAAATTGCAACTTGCCCAGATTTGATGCAAAGTTGATGCTGGAAAAACTGCGGGACAAGCGAGTAGTGTTTGTTGGTGATTCCATTGGACGAAACCAGTGGGAATCATTCCTATGCATGCTGTCTTCGGCAGTTCCTAATAAGGATTCAATCTATGAAGTGAATGGCAACCCAATTTCCAAGCATAAGGGGTTTTTGGTGTTCAAATTTAAGGACTATAACTGCACTGTGGAGTACTACAGAGCTCCATTTCTTGTAGTGCAGAGCCGTCCTCCTTCAGGAGCTTCACAAAAGATCAGAACAACTTTGAGATTGGACCAAATGGATTGGAATTCTGGAAAGTGGAGAGATGCAGATATACTGGTTTTCAACACAGGACACTGGTGGAATTATGAGAAGACAATAAGAGGGGGTTGTTACTTCCAGGAAGGGGCAGAAGTAAAGATGGATATGAGTGTAGAAGATGCATATCACAGGTCCATAGAGACTGTGGTGCGATGGATAGATACTGCAGTAGATCCAAACAGGACTCGGGTTTTCTTTCGAACATATGCTCCTGTGCATTTCAGGTTCGTTTTGTTACTTGAATTAACTTTTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0007623 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048511 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

340

Amino Acids

39.88

Weight (kDa)

6.9

Isoelectric Point (pI)

49.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	93 - 144	1.2e-22	PMR5 N terminal Domain
PC-Esterase	PF13839	145 - 330	2.2e-66	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06080 AT3G06080 AT5G19160 AT5G19160
fragaria_vesca	FvH4_4g14780 FvH4_4g14780 FvH4_4g14780
malus_domestica	MD13G1185400.v1.1 MD16G1186300.v1.1
prunus_persica	Prupe.1G153100_v2.0.a1 Prupe.1G153100_v2.0.a1 Prupe.1G153100_v2.0.a1
pyrus_communis	pycom13g15990 pycom16g15590
rosa_chinensis	RchiOBHm_Chr4g0417821
rosa_laevigata	RLG00000007899
rosa_multiflora	Rmu_sc0000480.1_g000001 Rmu_sc0018885.1_g000003
rosa_roxburghii	Rroxscaffold_5G00361240
rosa_rugosa	Rorug04G0149300
rosa_samantha	Rh4CG222600 Rh4DG209600
rosa_wichuraiana	Rw4G017950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	202
AciI	CCGC	3 cut(s)	70, 202, 472
AclWI	GGATC	1 cut(s)	932
AcoI	YGGCCR	1 cut(s)	379
AcsI	RAATTY	2 cut(s)	626, 751
AcuI	CTGAAG	2 cut(s)	69, 681
AcvI	CACGTG	1 cut(s)	210
AdeI	CACNNNGTG	1 cut(s)	405
AfaI	GTAC	1 cut(s)	656
AfiI	CCNNNNNNNGG	5 cut(s)	95, 96, 349, 698, 850
AflIII	ACRYGT	1 cut(s)	282
AgsI	TTSAA	8 cut(s)	32, 58, 67, 76, 570, 625, 790, 1007
AjiI	CACGTC	1 cut(s)	283
AjnI	CCWGG	1 cut(s)	843
AloI	GAACNNNNNNTCC	2 cut(s)	958, 990
AluBI	AGCT	5 cut(s)	53, 79, 164, 665, 704
AluI	AGCT	5 cut(s)	53, 79, 164, 665, 704
Alw21I	GWGCWC	1 cut(s)	667
Alw26I	GTCTC	2 cut(s)	126, 899
AlwI	GGATC	1 cut(s)	932
Ama87I	CYCGRG	1 cut(s)	951
AoxI	GGCC	1 cut(s)	379
ApoI	RAATTY	2 cut(s)	626, 751
AspS9I	GGNCC	3 cut(s)	10, 736, 897
AsuHPI	GGTGA	1 cut(s)	509
AsuII	TTCGAA	1 cut(s)	964
AvaI	CYCGRG	1 cut(s)	951
AvaII	GGWCC	3 cut(s)	10, 736, 897
BaeI	ACNNNNGTAYC	2 cut(s)	918, 951
BanII	GRGCYC	2 cut(s)	90, 667
BbrPI	CACGTG	1 cut(s)	210
BbsI	GAAGAC	2 cut(s)	537, 824
Bbv12I	GWGCWC	1 cut(s)	667
BccI	CCATC	6 cut(s)	22, 284, 350, 405, 859, 912
BceAI	ACGGC	2 cut(s)	366, 672
BciT130I	CCWGG	1 cut(s)	845
BcoDI	GTCTC	2 cut(s)	126, 899
BfaI	CTAG	1 cut(s)	231
BfmI	CTRYAG	2 cut(s)	658, 930
BmcAI	AGTACT	1 cut(s)	656
Bme1390I	CCNGG	1 cut(s)	845
Bme18I	GGWCC	3 cut(s)	10, 736, 897
BmeT110I	CYCGRG	1 cut(s)	951
BmgBI	CACGTC	1 cut(s)	283
BmgT120I	GGNCC	3 cut(s)	10, 736, 897
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	1 cut(s)	845
BmsI	GCATC	5 cut(s)	329, 436, 447, 760, 874
BpiI	GAAGAC	2 cut(s)	537, 824
BplI	GAGNNNNNCTC	2 cut(s)	676, 708
Bpu10I	CCTNAGC	1 cut(s)	171
Bpu14I	TTCGAA	1 cut(s)	964
BsaAI	YACGTR	1 cut(s)	210
BsaBI	GATNNNNATC	1 cut(s)	888
BsaWI	WCCGGW	1 cut(s)	188
BsaXI	ACNNNNNCTCC	2 cut(s)	958, 988
Bsc4I	CCNNNNNNNGG	5 cut(s)	95, 96, 349, 698, 850
Bse1I	ACTGG	3 cut(s)	517, 786, 806
Bse3DI	GCAATG	1 cut(s)	229
Bse8I	GATNNNNATC	1 cut(s)	888
BseBI	CCWGG	1 cut(s)	845
BseGI	GGATG	4 cut(s)	244, 313, 344, 358
BseJI	GATNNNNATC	1 cut(s)	888
BseLI	CCNNNNNNNGG	5 cut(s)	95, 96, 349, 698, 850
BseMI	GCAATG	1 cut(s)	229
BseMII	CTCAG	1 cut(s)	9
BseNI	ACTGG	3 cut(s)	517, 786, 806
BseRI	GAGGAG	1 cut(s)	278
BsgI	GTGCAG	2 cut(s)	628, 701
BshFI	GGCC	1 cut(s)	381
BsiHKAI	GWGCWC	1 cut(s)	667
BsiHKCI	CYCGRG	1 cut(s)	951
BsiSI	CCGG	1 cut(s)	189
BslFI	GGGAC	1 cut(s)	488
BslI	CCNNNNNNNGG	5 cut(s)	95, 96, 349, 698, 850
BsmAI	GTCTC	2 cut(s)	126, 899
BsmFI	GGGAC	1 cut(s)	488
BsnI	GGCC	1 cut(s)	381
BsoBI	CYCGRG	1 cut(s)	951
Bsp119I	TTCGAA	1 cut(s)	964
Bsp1286I	GDGCHC	2 cut(s)	90, 667
Bsp143I	GATC	2 cut(s)	714, 937
BspACI	CCGC	3 cut(s)	70, 202, 472
BspANI	GGCC	1 cut(s)	381
BspCNI	CTCAG	1 cut(s)	10
BspLI	GGNNCC	1 cut(s)	12
BspMAI	CTGCAG	1 cut(s)	934
BspPI	GGATC	1 cut(s)	932
BspT104I	TTCGAA	1 cut(s)	964
BsrBI	CCGCTC	1 cut(s)	202
BsrDI	GCAATG	1 cut(s)	229
BsrI	ACTGG	3 cut(s)	517, 786, 806
BssMI	GATC	2 cut(s)	714, 937
Bst2UI	CCWGG	1 cut(s)	845
Bst4CI	ACNGT	2 cut(s)	649, 910
BstBAI	YACGTR	1 cut(s)	210
BstBI	TTCGAA	1 cut(s)	964
BstC8I	GCNNGC	1 cut(s)	539
BstDEI	CTNAG	3 cut(s)	6, 18, 171
BstENI	CCTNNNNNAGG	1 cut(s)	696
BstF5I	GGATG	4 cut(s)	244, 313, 344, 358
BstKTI	GATC	2 cut(s)	717, 940
BstMAI	GTCTC	2 cut(s)	126, 899
BstMBI	GATC	2 cut(s)	714, 937
BstMWI	GCNNNNNNNGC	3 cut(s)	76, 85, 478
BstNI	CCWGG	1 cut(s)	845
BstNSI	RCATGY	1 cut(s)	541
BstSCI	CCNGG	1 cut(s)	843
BstSFI	CTRYAG	2 cut(s)	658, 930
BstV2I	GAAGAC	2 cut(s)	537, 824
BstX2I	RGATCY	1 cut(s)	937
BstYI	RGATCY	1 cut(s)	937
BsuRI	GGCC	1 cut(s)	381
BtgZI	GCGATG	1 cut(s)	931
BtrI	CACGTC	1 cut(s)	283
BtsCI	GGATG	4 cut(s)	244, 313, 344, 358
BtsIMutI	CAGTG	4 cut(s)	45, 524, 645, 799
Cac8I	GCNNGC	1 cut(s)	539
Cfr13I	GGNCC	3 cut(s)	10, 736, 897
Csp6I	GTAC	1 cut(s)	655
CviAII	CATG	2 cut(s)	37, 538
CviQI	GTAC	1 cut(s)	655
DdeI	CTNAG	3 cut(s)	6, 18, 171
DpnI	GATC	2 cut(s)	716, 939
DpnII	GATC	2 cut(s)	714, 937
DraIII	CACNNNGTG	1 cut(s)	405
EaeI	YGGCCR	1 cut(s)	379
Ecl136II	GAGCTC	1 cut(s)	665
Eco24I	GRGCYC	2 cut(s)	90, 667
Eco47I	GGWCC	3 cut(s)	10, 736, 897
Eco53kI	GAGCTC	1 cut(s)	665
Eco57I	CTGAAG	2 cut(s)	69, 681
Eco72I	CACGTG	1 cut(s)	210
Eco88I	CYCGRG	1 cut(s)	951
EcoICRI	GAGCTC	1 cut(s)	665
EcoNI	CCTNNNNNAGG	1 cut(s)	696
EcoO109I	RGGNCCY	1 cut(s)	10
EcoRI	GAATTC	1 cut(s)	751
EcoRII	CCWGG	1 cut(s)	843
EcoT22I	ATGCAT	2 cut(s)	539, 889
EcoT38I	GRGCYC	2 cut(s)	90, 667
FaeI	CATG	2 cut(s)	40, 541
FaqI	GGGAC	1 cut(s)	488
FatI	CATG	2 cut(s)	36, 537
FauI	CCCGC	1 cut(s)	465
FauNDI	CATATG	1 cut(s)	970
FokI	GGATG	4 cut(s)	251, 320, 351, 365
FriOI	GRGCYC	2 cut(s)	90, 667
FspBI	CTAG	1 cut(s)	231
HaeIII	GGCC	1 cut(s)	381
HapII	CCGG	1 cut(s)	189
Hin1II	CATG	2 cut(s)	40, 541
HindIII	AAGCTT	1 cut(s)	51
HinfI	GANTC	8 cut(s)	108, 133, 227, 311, 500, 524, 566, 949
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	1 cut(s)	509
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	3 cut(s)	19, 199, 719
Hpy188III	TCNNGA	4 cut(s)	58, 386, 699, 756
Hpy8I	GTNNAC	1 cut(s)	207
HpyAV	CCTTC	2 cut(s)	705, 842
HpyCH4III	ACNGT	2 cut(s)	649, 910
HpyCH4IV	ACGT	2 cut(s)	209, 282
HpyF10VI	GCNNNNNNNGC	3 cut(s)	76, 85, 478
HpyF3I	CTNAG	3 cut(s)	6, 18, 171
HpySE526I	ACGT	2 cut(s)	209, 282
Hsp92II	CATG	2 cut(s)	40, 541
Kzo9I	GATC	2 cut(s)	714, 937
LmnI	GCTCC	4 cut(s)	199, 670, 701, 979
LweI	GCATC	5 cut(s)	329, 436, 447, 760, 874
MaeI	CTAG	1 cut(s)	231
MaeII	ACGT	2 cut(s)	209, 282
MaeIII	GTNAC	3 cut(s)	278, 836, 999
MalI	GATC	2 cut(s)	716, 939
MbiI	CCGCTC	1 cut(s)	202
MboI	GATC	2 cut(s)	714, 937
MboII	GAAGA	4 cut(s)	103, 537, 829, 893
MflI	RGATCY	1 cut(s)	937
MhlI	GDGCHC	2 cut(s)	90, 667
MluCI	AATT	6 cut(s)	424, 594, 626, 751, 808, 1007
MlyI	GAGTC	3 cut(s)	236, 320, 943
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	6 cut(s)	100, 256, 259, 263, 702, 821
Mph1103I	ATGCAT	2 cut(s)	539, 889
MseI	TTAA	2 cut(s)	630, 1010
MslI	CAYNNNNRTG	1 cut(s)	532
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	1 cut(s)	845
MvaI	CCWGG	1 cut(s)	845
MwoI	GCNNNNNNNGC	3 cut(s)	76, 85, 478
NdeI	CATATG	1 cut(s)	970
NdeII	GATC	2 cut(s)	714, 937
NlaIII	CATG	2 cut(s)	40, 541
NlaIV	GGNNCC	1 cut(s)	12
NmuCI	GTSAC	1 cut(s)	278
NsiI	ATGCAT	2 cut(s)	539, 889
NspI	RCATGY	1 cut(s)	541
NspV	TTCGAA	1 cut(s)	964
PaeI	GCATGC	1 cut(s)	541
PfeI	GAWTC	5 cut(s)	108, 133, 500, 524, 566
PfoI	TCCNGGA	1 cut(s)	843
PleI	GAGTC	3 cut(s)	235, 319, 943
PmaCI	CACGTG	1 cut(s)	210
PmlI	CACGTG	1 cut(s)	210
PpsI	GAGTC	3 cut(s)	235, 319, 943
Ppu21I	YACGTR	1 cut(s)	210
PpuMI	RGGWCCY	1 cut(s)	10
Psp124BI	GAGCTC	1 cut(s)	667
Psp5II	RGGWCCY	1 cut(s)	10
Psp6I	CCWGG	1 cut(s)	843
PspCI	CACGTG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	843
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	3 cut(s)	10, 736, 897
PspPPI	RGGWCCY	1 cut(s)	10
PstI	CTGCAG	1 cut(s)	934
PsuI	RGATCY	1 cut(s)	937
RsaI	GTAC	1 cut(s)	656
RsaNI	GTAC	1 cut(s)	655
RseI	CAYNNNNRTG	1 cut(s)	532
SacI	GAGCTC	1 cut(s)	667
SaqAI	TTAA	2 cut(s)	630, 1010
Sau3AI	GATC	2 cut(s)	714, 937
Sau96I	GGNCC	3 cut(s)	10, 736, 897
ScaI	AGTACT	1 cut(s)	656
SchI	GAGTC	3 cut(s)	236, 320, 943
ScrFI	CCNGG	1 cut(s)	845
SduI	GDGCHC	2 cut(s)	90, 667
SfaNI	GCATC	5 cut(s)	329, 436, 447, 760, 874
SfcI	CTRYAG	2 cut(s)	658, 930
SfuI	TTCGAA	1 cut(s)	964
SinI	GGWCC	3 cut(s)	10, 736, 897
SmiMI	CAYNNNNRTG	1 cut(s)	532
SphI	GCATGC	1 cut(s)	541
Sse9I	AATT	6 cut(s)	424, 594, 626, 751, 808, 1007
SsiI	CCGC	3 cut(s)	70, 202, 472
SspMI	CTAG	1 cut(s)	231
SstI	GAGCTC	1 cut(s)	667
StyD4I	CCNGG	1 cut(s)	843
TaaI	ACNGT	2 cut(s)	649, 910
TaiI	ACGT	2 cut(s)	212, 285
TaqI	TCGA	1 cut(s)	964
TasI	AATT	6 cut(s)	424, 594, 626, 751, 808, 1007
TatI	WGTACW	1 cut(s)	654
TfiI	GAWTC	5 cut(s)	108, 133, 500, 524, 566
Tru1I	TTAA	2 cut(s)	630, 1010
Tru9I	TTAA	2 cut(s)	630, 1010
TscAI	CASTG	4 cut(s)	52, 524, 652, 806
TseFI	GTSAC	1 cut(s)	278
Tsp45I	GTSAC	1 cut(s)	278
TspDTI	ATGAA	1 cut(s)	591
TspRI	CASTG	4 cut(s)	52, 524, 652, 806
VpaK11BI	GGWCC	3 cut(s)	10, 736, 897
XagI	CCTNNNNNAGG	1 cut(s)	696
XapI	RAATTY	2 cut(s)	626, 751
XceI	RCATGY	1 cut(s)	541
XcmI	CCANNNNNNNNNTGG	1 cut(s)	907
XspI	CTAG	1 cut(s)	231
ZrmI	AGTACT	1 cut(s)	656
Zsp2I	ATGCAT	2 cut(s)	539, 889

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.