Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008699

Physical Location & Seq

Genomic Coordinates Forward (+)

18426047 .. 18429626

Gene Structure 3580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g14780.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGTCTAAGGACCCATCTGAGCCTGACCTTGAAGCCATGCCATTCAGTGATGCTTTCAAGAAGTTCAAGCGTTTGAAGTTTTTTGAGCCCTCTTTGGGGGTCTTGGGATTCTTCTTTGTGTCTGTGTGTGTTATTCTCTGCTTCTTTTACTTGGATTACAGAGCTGCTGCCAAGGGGTTTCGGTTTTCGGGTCAGTCTGAGAGGTACATGTGGTTGCAGAGCAACGGGTCTAGCAAGGATTTCAGAGTTGAGTTTCTTGGCGAGGAGGGAGGTGAGTGTGACGTGTTTGATGGGGATTGGGTGTGGGATGAGTCTTACCCTTTGTATCAGTCCAATGAATGCCCCTTTTTGGATGAAGGATTTAGGTGTAGTGAGAATGGCCGTCCTGATTTGTTTTACACAAAGTGGAGATGGCAACCCAGATATTGCAACTTGCCCAGATTTGATGCAAAGTTGATGCTGGAAAAACTGCGAGACAAGCGAGTAGTGTTTGTTGGTGATTCCATTGGAAGAAACCAGTGGGAATCATTCTTATGCATGCTGTCTTCAGCAATTCCTAACAAGGATTCAATCTATGAAGTGAATGGCAACCCAATTACCAAGCACAAGGGGTTTTTGGTGTTCAAATTTAAGGACTATAATTGCACTGTGGAGTACTACAGAGCTCCCTTTCTTGTACTCCAAAGGCGTCCTCCTTCAGGAGCTTCACAAAAGGTCAGAACAACTTTGAGATTGGACCAAATGGATTGGAATTCTGGAAAGTGGAGAGATGCAGATATGCTGGTTTTCAACACAGGACACTGGTGGAATTATGAGAAGACTATAAGAGGGGGTTGTTACTTTCAGGAAGGGGCAGAAGTAAAGATGGAGATGAGTGTAGAAGATGCGTATCACAGGTCCATAGAGACTGTAGTGCGATGGATAGATACTGTAGTAAATCCAAACAGGACTCAGGTTTTCTTTCGAACATATGCTCCTGTGCATTTCAGAGGTGGTGATTGGAAGAATGGTGGAAACTGTCACCTGGAAACATTGCCTGAGCTAGCCTCGTCATTTGTTCCTACTGAATCTTGGAGTCAATACAGAATAGCCAATTCTGTGTTATCAGCTTTCTCAAACACATCAAAGGCAATGAAGTTCAATGTGTTAAATGTAACACAATTGACTGCTCGAAGAAAAGATGGGCATTCGTCTTTGTACTATCTGGGTCCTAAACTTAGCCCTGCCTCTATTCGCAGGCAAGATTGCAGCCACTGGTGTCTGCCTGGAGTCCCAGATACATGGAATGAACTACTCTATGCACTGTTTTTAAAGCATGAGAGGACTAGTACATTGAATGCATCAACTAATAGCATGCCAGGTATGAGTTGGAACAACTCTTTGCTACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0007623 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048511 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

464

Amino Acids

53.82

Weight (kDa)

8.33

Isoelectric Point (pI)

50.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMR5N	PF14416	91 - 115	5.5e-08	PMR5 N terminal Domain
PC-Esterase	PF13839	116 - 405	6.9e-103	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06080 AT3G06080 AT5G19160 AT5G19160
fragaria_vesca	FvH4_4g14780 FvH4_4g14780 FvH4_4g14780
malus_domestica	MD13G1185400.v1.1 MD16G1186300.v1.1
prunus_persica	Prupe.1G153100_v2.0.a1 Prupe.1G153100_v2.0.a1 Prupe.1G153100_v2.0.a1
pyrus_communis	pycom13g15990 pycom16g15590
rosa_chinensis	RchiOBHm_Chr4g0417821
rosa_laevigata	RLG00000007899
rosa_multiflora	Rmu_sc0000480.1_g000001 Rmu_sc0018885.1_g000003
rosa_roxburghii	Rroxscaffold_5G00361240
rosa_rugosa	Rorug04G0149300
rosa_samantha	Rh4CG222600 Rh4DG209600
rosa_wichuraiana	Rw4G017950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	379
AcsI	RAATTY	2 cut(s)	626, 751
AcuI	CTGAAG	2 cut(s)	531, 681
AcyI	GRCGYC	1 cut(s)	688
AdeI	CACNNNGTG	1 cut(s)	405
AfaI	GTAC	5 cut(s)	206, 656, 678, 1199, 1330
AfiI	CCNNNNNNNGG	4 cut(s)	95, 96, 349, 698
AflIII	ACRYGT	2 cut(s)	207, 282
AgsI	TTSAA	9 cut(s)	32, 58, 67, 76, 570, 625, 790, 1141, 1336
AhlI	ACTAGT	1 cut(s)	1325
AjiI	CACGTC	1 cut(s)	283
AjnI	CCWGG	3 cut(s)	1023, 1264, 1357
AloI	GAACNNNNNNTCC	2 cut(s)	958, 990
AluBI	AGCT	5 cut(s)	164, 665, 704, 1042, 1109
AluI	AGCT	5 cut(s)	164, 665, 704, 1042, 1109
Alw21I	GWGCWC	1 cut(s)	667
Alw26I	GTCTC	2 cut(s)	468, 899
AlwNI	CAGNNNCTG	1 cut(s)	1254
AoxI	GGCC	1 cut(s)	379
ApeKI	GCWGC	3 cut(s)	164, 167, 1248
ApoI	RAATTY	2 cut(s)	626, 751
AspS9I	GGNCC	4 cut(s)	10, 736, 897, 1208
AsuHPI	GGTGA	4 cut(s)	284, 509, 1007, 1013
AsuII	TTCGAA	1 cut(s)	964
AsuNHI	GCTAGC	1 cut(s)	1042
AvaII	GGWCC	4 cut(s)	10, 736, 897, 1208
BaeI	ACNNNNGTAYC	2 cut(s)	918, 951
BanII	GRGCYC	2 cut(s)	90, 667
BbsI	GAAGAC	2 cut(s)	537, 824
Bbv12I	GWGCWC	1 cut(s)	667
BbvI	GCAGC	3 cut(s)	151, 154, 1260
BccI	CCATC	6 cut(s)	22, 284, 405, 859, 912, 1175
BceAI	ACGGC	1 cut(s)	366
BciT130I	CCWGG	3 cut(s)	1025, 1266, 1359
BcoDI	GTCTC	2 cut(s)	468, 899
BcuI	ACTAGT	1 cut(s)	1325
BfaI	CTAG	3 cut(s)	231, 1043, 1326
BfmI	CTRYAG	3 cut(s)	658, 909, 930
BisI	GCNGC	3 cut(s)	165, 168, 1249
BlsI	GCNGC	3 cut(s)	166, 169, 1250
BmcAI	AGTACT	1 cut(s)	656
Bme1390I	CCNGG	3 cut(s)	1025, 1266, 1359
Bme18I	GGWCC	4 cut(s)	10, 736, 897, 1208
BmgBI	CACGTC	1 cut(s)	283
BmgT120I	GGNCC	4 cut(s)	10, 736, 897, 1208
BmiI	GGNNCC	2 cut(s)	12, 1209
BmrFI	CCNGG	3 cut(s)	1025, 1266, 1359
BmsI	GCATC	6 cut(s)	40, 436, 447, 760, 874, 1349
BmtI	GCTAGC	1 cut(s)	1046
BpiI	GAAGAC	2 cut(s)	537, 824
BplI	GAGNNNNNCTC	2 cut(s)	1031, 1063
BpmI	CTGGAG	1 cut(s)	1287
Bpu10I	CCTNAGC	1 cut(s)	1038
Bpu14I	TTCGAA	1 cut(s)	964
BsaBI	GATNNNNATC	1 cut(s)	888
BsaHI	GRCGYC	1 cut(s)	688
BsaJI	CCNNGG	1 cut(s)	171
BsaXI	ACNNNNNCTCC	2 cut(s)	958, 988
Bsc4I	CCNNNNNNNGG	4 cut(s)	95, 96, 349, 698
Bse1I	ACTGG	3 cut(s)	517, 806, 1259
Bse3DI	GCAATG	2 cut(s)	1031, 1137
Bse8I	GATNNNNATC	1 cut(s)	888
BseBI	CCWGG	3 cut(s)	1025, 1266, 1359
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	2 cut(s)	313, 358
BseJI	GATNNNNATC	1 cut(s)	888
BseLI	CCNNNNNNNGG	4 cut(s)	95, 96, 349, 698
BseMI	GCAATG	2 cut(s)	1031, 1137
BseMII	CTCAG	4 cut(s)	9, 189, 965, 1029
BseNI	ACTGG	3 cut(s)	517, 806, 1259
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	3 cut(s)	151, 154, 1260
BshFI	GGCC	1 cut(s)	381
BsiHKAI	GWGCWC	1 cut(s)	667
BslFI	GGGAC	1 cut(s)	1256
BslI	CCNNNNNNNGG	4 cut(s)	95, 96, 349, 698
BsmAI	GTCTC	2 cut(s)	468, 899
BsmFI	GGGAC	1 cut(s)	1256
BsmI	GAATGC	3 cut(s)	344, 1186, 1342
BsnI	GGCC	1 cut(s)	381
Bsp119I	TTCGAA	1 cut(s)	964
Bsp1286I	GDGCHC	2 cut(s)	90, 667
BspANI	GGCC	1 cut(s)	381
BspCNI	CTCAG	4 cut(s)	10, 190, 964, 1030
BspLI	GGNNCC	2 cut(s)	12, 1209
BspOI	GCTAGC	1 cut(s)	1046
BspT104I	TTCGAA	1 cut(s)	964
BsrDI	GCAATG	2 cut(s)	1031, 1137
BsrI	ACTGG	3 cut(s)	517, 806, 1259
BssECI	CCNNGG	1 cut(s)	171
BssNI	GRCGYC	1 cut(s)	688
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	3 cut(s)	1025, 1266, 1359
Bst4CI	ACNGT	5 cut(s)	649, 910, 931, 1019, 1305
BstACI	GRCGYC	1 cut(s)	688
BstBI	TTCGAA	1 cut(s)	964
BstC8I	GCNNGC	4 cut(s)	539, 1044, 1238, 1355
BstDEI	CTNAG	6 cut(s)	6, 18, 198, 951, 1038, 1217
BstENI	CCTNNNNNAGG	1 cut(s)	696
BstF5I	GGATG	2 cut(s)	313, 358
BstMAI	GTCTC	2 cut(s)	468, 899
BstMWI	GCNNNNNNNGC	1 cut(s)	478
BstNI	CCWGG	3 cut(s)	1025, 1266, 1359
BstNSI	RCATGY	3 cut(s)	211, 541, 1357
BstSCI	CCNGG	3 cut(s)	1023, 1264, 1357
BstSFI	CTRYAG	3 cut(s)	658, 909, 930
BstV1I	GCAGC	3 cut(s)	151, 154, 1260
BstV2I	GAAGAC	2 cut(s)	537, 824
BstXI	CCANNNNNNTGG	1 cut(s)	1281
BsuRI	GGCC	1 cut(s)	381
BtgZI	GCGATG	1 cut(s)	931
BtrI	CACGTC	1 cut(s)	283
BtsCI	GGATG	2 cut(s)	313, 358
BtsIMutI	CAGTG	6 cut(s)	52, 524, 645, 799, 1252, 1301
Cac8I	GCNNGC	4 cut(s)	539, 1044, 1238, 1355
CaiI	CAGNNNCTG	1 cut(s)	1254
Cfr13I	GGNCC	4 cut(s)	10, 736, 897, 1208
CseI	GACGC	1 cut(s)	677
Csp6I	GTAC	5 cut(s)	205, 655, 677, 1198, 1329
CviAII	CATG	6 cut(s)	37, 208, 538, 1281, 1316, 1354
CviQI	GTAC	5 cut(s)	205, 655, 677, 1198, 1329
DdeI	CTNAG	6 cut(s)	6, 18, 198, 951, 1038, 1217
DraI	TTTAAA	1 cut(s)	1311
DraIII	CACNNNGTG	1 cut(s)	405
EaeI	YGGCCR	1 cut(s)	379
Ecl136II	GAGCTC	1 cut(s)	665
Eco130I	CCWWGG	1 cut(s)	171
Eco24I	GRGCYC	2 cut(s)	90, 667
Eco47I	GGWCC	4 cut(s)	10, 736, 897, 1208
Eco53kI	GAGCTC	1 cut(s)	665
Eco57I	CTGAAG	2 cut(s)	531, 681
EcoICRI	GAGCTC	1 cut(s)	665
EcoNI	CCTNNNNNAGG	1 cut(s)	696
EcoO109I	RGGNCCY	2 cut(s)	10, 1208
EcoRI	GAATTC	1 cut(s)	751
EcoRII	CCWGG	3 cut(s)	1023, 1264, 1357
EcoT14I	CCWWGG	1 cut(s)	171
EcoT22I	ATGCAT	2 cut(s)	539, 1342
EcoT38I	GRGCYC	2 cut(s)	90, 667
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	6 cut(s)	40, 211, 541, 1284, 1319, 1357
FaqI	GGGAC	1 cut(s)	1256
FatI	CATG	6 cut(s)	36, 207, 537, 1280, 1315, 1353
FauNDI	CATATG	1 cut(s)	970
Fnu4HI	GCNGC	3 cut(s)	165, 168, 1249
FokI	GGATG	2 cut(s)	320, 365
FriOI	GRGCYC	2 cut(s)	90, 667
Fsp4HI	GCNGC	3 cut(s)	165, 168, 1249
FspBI	CTAG	3 cut(s)	231, 1043, 1326
GluI	GCNGC	3 cut(s)	165, 168, 1249
GsuI	CTGGAG	1 cut(s)	1287
HaeIII	GGCC	1 cut(s)	381
HgaI	GACGC	1 cut(s)	677
Hin1I	GRCGYC	1 cut(s)	688
Hin1II	CATG	6 cut(s)	40, 211, 541, 1284, 1319, 1357
HinfI	GANTC	9 cut(s)	108, 311, 500, 524, 566, 949, 1067, 1075, 1269
HphI	GGTGA	4 cut(s)	284, 509, 1007, 1013
Hpy188I	TCNGA	5 cut(s)	19, 199, 245, 719, 989
Hpy188III	TCNNGA	5 cut(s)	58, 386, 699, 756, 845
HpyAV	CCTTC	3 cut(s)	350, 705, 842
HpyCH4III	ACNGT	5 cut(s)	649, 910, 931, 1019, 1305
HpyCH4IV	ACGT	1 cut(s)	282
HpyF10VI	GCNNNNNNNGC	1 cut(s)	478
HpyF3I	CTNAG	6 cut(s)	6, 18, 198, 951, 1038, 1217
HpySE526I	ACGT	1 cut(s)	282
Hsp92I	GRCGYC	1 cut(s)	688
Hsp92II	CATG	6 cut(s)	40, 211, 541, 1284, 1319, 1357
LmnI	GCTCC	3 cut(s)	670, 701, 979
Lsp1109I	GCAGC	3 cut(s)	151, 154, 1260
LweI	GCATC	6 cut(s)	40, 436, 447, 760, 874, 1349
MaeI	CTAG	3 cut(s)	231, 1043, 1326
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	4 cut(s)	278, 836, 1019, 1153
MboII	GAAGA	7 cut(s)	103, 522, 537, 829, 893, 1015, 1185
MfeI	CAATTG	1 cut(s)	1160
MhlI	GDGCHC	2 cut(s)	90, 667
MluCI	AATT	8 cut(s)	552, 594, 626, 640, 751, 808, 1093, 1160
MlyI	GAGTC	4 cut(s)	320, 943, 1084, 1278
MmeI	TCCRAC	1 cut(s)	1349
Mph1103I	ATGCAT	2 cut(s)	539, 1342
MseI	TTAA	3 cut(s)	630, 1148, 1310
MslI	CAYNNNNRTG	1 cut(s)	532
MspR9I	CCNGG	3 cut(s)	1025, 1266, 1359
MunI	CAATTG	1 cut(s)	1160
Mva1269I	GAATGC	3 cut(s)	344, 1186, 1342
MvaI	CCWGG	3 cut(s)	1025, 1266, 1359
MwoI	GCNNNNNNNGC	1 cut(s)	478
NdeI	CATATG	1 cut(s)	970
NheI	GCTAGC	1 cut(s)	1042
NlaIII	CATG	6 cut(s)	40, 211, 541, 1284, 1319, 1357
NlaIV	GGNNCC	2 cut(s)	12, 1209
NmuCI	GTSAC	2 cut(s)	278, 1019
NsiI	ATGCAT	2 cut(s)	539, 1342
NspI	RCATGY	3 cut(s)	211, 541, 1357
NspV	TTCGAA	1 cut(s)	964
PaeI	GCATGC	2 cut(s)	541, 1357
PciI	ACATGT	1 cut(s)	207
PctI	GAATGC	3 cut(s)	344, 1186, 1342
PfeI	GAWTC	5 cut(s)	108, 500, 524, 566, 1067
PkrI	GCNGC	3 cut(s)	166, 169, 1250
PleI	GAGTC	4 cut(s)	319, 943, 1083, 1277
PpsI	GAGTC	4 cut(s)	319, 943, 1083, 1277
PpuMI	RGGWCCY	2 cut(s)	10, 1208
PscI	ACATGT	1 cut(s)	207
Psp124BI	GAGCTC	1 cut(s)	667
Psp5II	RGGWCCY	2 cut(s)	10, 1208
Psp6I	CCWGG	3 cut(s)	1023, 1264, 1357
PspGI	CCWGG	3 cut(s)	1023, 1264, 1357
PspN4I	GGNNCC	2 cut(s)	12, 1209
PspPI	GGNCC	4 cut(s)	10, 736, 897, 1208
PspPPI	RGGWCCY	2 cut(s)	10, 1208
PstNI	CAGNNNCTG	1 cut(s)	1254
RsaI	GTAC	5 cut(s)	206, 656, 678, 1199, 1330
RsaNI	GTAC	5 cut(s)	205, 655, 677, 1198, 1329
RseI	CAYNNNNRTG	1 cut(s)	532
SacI	GAGCTC	1 cut(s)	667
SaqAI	TTAA	3 cut(s)	630, 1148, 1310
SatI	GCNGC	3 cut(s)	165, 168, 1249
Sau96I	GGNCC	4 cut(s)	10, 736, 897, 1208
ScaI	AGTACT	1 cut(s)	656
SchI	GAGTC	4 cut(s)	320, 943, 1084, 1278
ScrFI	CCNGG	3 cut(s)	1025, 1266, 1359
SduI	GDGCHC	2 cut(s)	90, 667
SfaNI	GCATC	6 cut(s)	40, 436, 447, 760, 874, 1349
SfcI	CTRYAG	3 cut(s)	658, 909, 930
SfuI	TTCGAA	1 cut(s)	964
SinI	GGWCC	4 cut(s)	10, 736, 897, 1208
SmiMI	CAYNNNNRTG	1 cut(s)	532
SpeI	ACTAGT	1 cut(s)	1325
SphI	GCATGC	2 cut(s)	541, 1357
Sse9I	AATT	8 cut(s)	552, 594, 626, 640, 751, 808, 1093, 1160
SspMI	CTAG	3 cut(s)	231, 1043, 1326
SstI	GAGCTC	1 cut(s)	667
StyD4I	CCNGG	3 cut(s)	1023, 1264, 1357
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	5 cut(s)	649, 910, 931, 1019, 1305
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	2 cut(s)	964, 1171
TasI	AATT	8 cut(s)	552, 594, 626, 640, 751, 808, 1093, 1160
TatI	WGTACW	4 cut(s)	654, 676, 1197, 1328
TfiI	GAWTC	5 cut(s)	108, 500, 524, 566, 1067
Tru1I	TTAA	3 cut(s)	630, 1148, 1310
Tru9I	TTAA	3 cut(s)	630, 1148, 1310
TscAI	CASTG	6 cut(s)	52, 524, 652, 806, 1259, 1308
TseFI	GTSAC	2 cut(s)	278, 1019
TseI	GCWGC	3 cut(s)	164, 167, 1248
Tsp45I	GTSAC	2 cut(s)	278, 1019
TspDTI	ATGAA	5 cut(s)	351, 369, 591, 1148, 1302
TspRI	CASTG	6 cut(s)	52, 524, 652, 806, 1259, 1308
VpaK11BI	GGWCC	4 cut(s)	10, 736, 897, 1208
XagI	CCTNNNNNAGG	1 cut(s)	696
XapI	RAATTY	2 cut(s)	626, 751
XceI	RCATGY	3 cut(s)	211, 541, 1357
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1365
XspI	CTAG	3 cut(s)	231, 1043, 1326
ZrmI	AGTACT	1 cut(s)	656
Zsp2I	ATGCAT	2 cut(s)	539, 1342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.