AT3G06145

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014114
Physical Location & Seq
Reverse (-)
1859822 .. 1860797
976 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G06145.1

Sequence Viewer

Length: 501 bp
ATGAATATGAAAACATCAAAGATGAAGTTCACAAAAGAGATGATAGAGTCTATCAAAGACAAGCTCCCGAGGCTCAGCTTCCTCCGACAATGCTACGGTGGTTGCGGCGACCGGACGCATTTACTCCCTTGCTCCATCGCCACCACTTCCACCCGCTTTTGGAACCTCTCCGACCGTCCCGTGGAGCTCCAGATTCGGGTCGGTTCAATTCTAAAACGGGTCCACACTCTCAAACCTGGCCGTTCCAAGAAGCTTAGACACAGAAGCATTCACAGAGCTTACGTTGATGACCAGGAAGGACGTAGATGGCTGTACTACGACGACACTTGTCTACCGTACGTATGGGTTCACGAGACTGGTACGGACTTGTCGAAGATGGTGAAGCAACAGTACGTGAGTCTCGAGGATCTGAGGGATTACTCGGAGATTAGGGTTTTTAAGGATTTACAGAGAGGTTGTGTCGCAGTTGAGAAAAGAGACAGAGCTTCTGCTTTGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

19.53

Weight (kDa)

9.61

Isoelectric Point (pI)

50.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014114)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06145
fragaria_vesca FvH4_4g14500
malus_domestica MD13G1183200.v1.1 MD16G1184100.v1.1
prunus_persica Prupe.1G151500_v2.0.a1
pyrus_communis pycom13g15850 pycom16g15460
rosa_chinensis RchiOBHm_Chr4g0418331
rosa_laevigata RLG00000007875
rosa_multiflora Rmu_sc0011505.1_g000002
rosa_roxburghii Rroxscaffold_5G00361520
rosa_rugosa Rorug04G0152200
rosa_samantha Rh4AG213800 Rh4BG216600 Rh4CG225400 Rh4DG212300
rosa_wichuraiana Rw4G018160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 331
AciI CCGC 2 cut(s) 105, 154
AclWI GGATC 1 cut(s) 414
AcoI YGGCCR 1 cut(s) 238
AfaI GTAC 4 cut(s) 314, 338, 361, 392
AfiI CCNNNNNNNGG 3 cut(s) 159, 181, 196
AgsI TTSAA 1 cut(s) 207
AjnI CCWGG 2 cut(s) 235, 291
AluBI AGCT 6 cut(s) 64, 78, 187, 253, 278, 485
AluI AGCT 6 cut(s) 64, 78, 187, 253, 278, 485
Alw21I GWGCWC 1 cut(s) 189
Alw26I GTCTC 3 cut(s) 347, 404, 471
AlwI GGATC 1 cut(s) 414
Ama87I CYCGRG 2 cut(s) 67, 401
AoxI GGCC 1 cut(s) 238
AspS9I GGNCC 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 391
AvaI CYCGRG 2 cut(s) 67, 401
AvaII GGWCC 1 cut(s) 220
BanII GRGCYC 1 cut(s) 189
BarI GAAGNNNNNNTAC 2 cut(s) 374, 406
BauI CACGAG 1 cut(s) 350
Bbv12I GWGCWC 1 cut(s) 189
BccI CCATC 3 cut(s) 143, 300, 370
BceAI ACGGC 1 cut(s) 225
BciT130I CCWGG 2 cut(s) 237, 293
BcoDI GTCTC 3 cut(s) 347, 404, 471
BisI GCNGC 1 cut(s) 106
BlpI GCTNAGC 1 cut(s) 74
BlsI GCNGC 1 cut(s) 107
Bme1390I CCNGG 2 cut(s) 237, 293
Bme18I GGWCC 1 cut(s) 220
BmeT110I CYCGRG 2 cut(s) 67, 401
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 2 cut(s) 164, 221
BmrFI CCNGG 2 cut(s) 237, 293
BoxI GACNNNNGTC 1 cut(s) 327
BpmI CTGGAG 1 cut(s) 173
Bpu1102I GCTNAGC 1 cut(s) 74
BsaAI YACGTR 2 cut(s) 340, 394
BsaJI CCNNGG 2 cut(s) 68, 180
BsaWI WCCGGW 1 cut(s) 111
Bsc4I CCNNNNNNNGG 3 cut(s) 159, 181, 196
Bse1I ACTGG 1 cut(s) 361
BseBI CCWGG 2 cut(s) 237, 293
BseDI CCNNGG 2 cut(s) 68, 180
BseLI CCNNNNNNNGG 3 cut(s) 159, 181, 196
BseMII CTCAG 2 cut(s) 88, 401
BseNI ACTGG 1 cut(s) 361
Bsh1285I CGRYCG 2 cut(s) 112, 175
BshFI GGCC 1 cut(s) 240
BsiEI CGRYCG 2 cut(s) 112, 175
BsiHKAI GWGCWC 1 cut(s) 189
BsiHKCI CYCGRG 2 cut(s) 67, 401
BsiSI CCGG 1 cut(s) 112
BsiWI CGTACG 1 cut(s) 336
BslFI GGGAC 1 cut(s) 162
BslI CCNNNNNNNGG 3 cut(s) 159, 181, 196
BsmAI GTCTC 3 cut(s) 347, 404, 471
BsmFI GGGAC 1 cut(s) 162
BsmI GAATGC 1 cut(s) 267
BsnI GGCC 1 cut(s) 240
BsoBI CYCGRG 2 cut(s) 67, 401
Bsp1286I GDGCHC 1 cut(s) 189
Bsp143I GATC 1 cut(s) 406
Bsp1720I GCTNAGC 1 cut(s) 74
BspACI CCGC 2 cut(s) 105, 154
BspANI GGCC 1 cut(s) 240
BspCNI CTCAG 2 cut(s) 87, 402
BspLI GGNNCC 2 cut(s) 164, 221
BspPI GGATC 1 cut(s) 414
BsrI ACTGG 1 cut(s) 361
BssECI CCNNGG 2 cut(s) 68, 180
BssMI GATC 1 cut(s) 406
BssSI CACGAG 1 cut(s) 350
Bst2BI CACGAG 1 cut(s) 350
Bst2UI CCWGG 2 cut(s) 237, 293
Bst4CI ACNGT 4 cut(s) 98, 176, 336, 390
BstBAI YACGTR 2 cut(s) 340, 394
BstDEI CTNAG 3 cut(s) 74, 254, 410
BstDSI CCRYGG 1 cut(s) 180
BstKTI GATC 1 cut(s) 409
BstMAI GTCTC 3 cut(s) 347, 404, 471
BstMBI GATC 1 cut(s) 406
BstMCI CGRYCG 2 cut(s) 112, 175
BstMWI GCNNNNNNNGC 1 cut(s) 70
BstNI CCWGG 2 cut(s) 237, 293
BstPAI GACNNNNGTC 1 cut(s) 327
BstSCI CCNGG 2 cut(s) 235, 291
BstSNI TACGTA 1 cut(s) 340
BstX2I RGATCY 1 cut(s) 406
BstYI RGATCY 1 cut(s) 406
BsuRI GGCC 1 cut(s) 240
BtgI CCRYGG 1 cut(s) 180
BtgZI GCGATG 1 cut(s) 121
Cfr13I GGNCC 1 cut(s) 220
CseI GACGC 1 cut(s) 124
Csp6I GTAC 4 cut(s) 313, 337, 360, 391
CviJI RGCY 9 cut(s) 64, 73, 78, 187, 240, 253, 278, 310, 485
CviKI_1 RGCY 9 cut(s) 64, 73, 78, 187, 240, 253, 278, 310, 485
CviQI GTAC 4 cut(s) 313, 337, 360, 391
DdeI CTNAG 3 cut(s) 74, 254, 410
DpnI GATC 1 cut(s) 408
DpnII GATC 1 cut(s) 406
EaeI YGGCCR 1 cut(s) 238
Ecl136II GAGCTC 1 cut(s) 187
Eco105I TACGTA 1 cut(s) 340
Eco24I GRGCYC 1 cut(s) 189
Eco47I GGWCC 1 cut(s) 220
Eco53kI GAGCTC 1 cut(s) 187
Eco88I CYCGRG 2 cut(s) 67, 401
EcoICRI GAGCTC 1 cut(s) 187
EcoRII CCWGG 2 cut(s) 235, 291
EcoT38I GRGCYC 1 cut(s) 189
FaiI YATR 2 cut(s) 8, 343
FaqI GGGAC 1 cut(s) 162
FauI CCCGC 1 cut(s) 161
FblI GTMKAC 1 cut(s) 331
Fnu4HI GCNGC 1 cut(s) 106
FriOI GRGCYC 1 cut(s) 189
Fsp4HI GCNGC 1 cut(s) 106
GluI GCNGC 1 cut(s) 106
GsuI CTGGAG 1 cut(s) 173
HaeIII GGCC 1 cut(s) 240
HapII CCGG 1 cut(s) 112
HgaI GACGC 1 cut(s) 124
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 3 cut(s) 47, 193, 397
HpaII CCGG 1 cut(s) 112
HphI GGTGA 1 cut(s) 391
Hpy166II GTNNAC 4 cut(s) 30, 223, 332, 349
Hpy188I TCNGA 4 cut(s) 86, 172, 411, 424
Hpy188III TCNNGA 4 cut(s) 67, 190, 350, 401
Hpy8I GTNNAC 4 cut(s) 30, 223, 332, 349
Hpy99I CGWCG 1 cut(s) 323
HpyAV CCTTC 1 cut(s) 290
HpyCH4III ACNGT 4 cut(s) 98, 176, 336, 390
HpyCH4IV ACGT 4 cut(s) 282, 301, 339, 393
HpyF10VI GCNNNNNNNGC 1 cut(s) 70
HpyF3I CTNAG 3 cut(s) 74, 254, 410
HpySE526I ACGT 4 cut(s) 282, 301, 339, 393
Kzo9I GATC 1 cut(s) 406
LmnI GCTCC 4 cut(s) 69, 137, 184, 192
LpnPI CCDG 7 cut(s) 125, 203, 222, 249, 278, 305, 342
MaeII ACGT 4 cut(s) 282, 301, 339, 393
MalI GATC 1 cut(s) 408
MboI GATC 1 cut(s) 406
MboII GAAGA 1 cut(s) 385
MflI RGATCY 1 cut(s) 406
MhlI GDGCHC 1 cut(s) 189
MluCI AATT 1 cut(s) 207
MlyI GAGTC 2 cut(s) 56, 406
MmeI TCCRAC 2 cut(s) 109, 195
MnlI CCTC 6 cut(s) 63, 92, 176, 397, 405, 446
MseI TTAA 1 cut(s) 438
MspI CCGG 1 cut(s) 112
MspR9I CCNGG 2 cut(s) 237, 293
Mva1269I GAATGC 1 cut(s) 267
MvaI CCWGG 2 cut(s) 237, 293
MwoI GCNNNNNNNGC 1 cut(s) 70
NdeII GATC 1 cut(s) 406
NlaIV GGNNCC 2 cut(s) 164, 221
PaeR7I CTCGAG 1 cut(s) 401
PcsI WCGNNNNNNNCGW 2 cut(s) 368, 399
PctI GAATGC 1 cut(s) 267
PfeI GAWTC 1 cut(s) 193
Pfl23II CGTACG 1 cut(s) 336
PkrI GCNGC 1 cut(s) 107
PleI GAGTC 2 cut(s) 55, 405
PpsI GAGTC 2 cut(s) 55, 405
Ppu21I YACGTR 2 cut(s) 340, 394
PshAI GACNNNNGTC 1 cut(s) 327
Psp124BI GAGCTC 1 cut(s) 189
Psp6I CCWGG 2 cut(s) 235, 291
PspGI CCWGG 2 cut(s) 235, 291
PspLI CGTACG 1 cut(s) 336
PspN4I GGNNCC 2 cut(s) 164, 221
PspPI GGNCC 1 cut(s) 220
PsuI RGATCY 1 cut(s) 406
RsaI GTAC 4 cut(s) 314, 338, 361, 392
RsaNI GTAC 4 cut(s) 313, 337, 360, 391
SacI GAGCTC 1 cut(s) 189
SaqAI TTAA 1 cut(s) 438
SatI GCNGC 1 cut(s) 106
Sau3AI GATC 1 cut(s) 406
Sau96I GGNCC 1 cut(s) 220
SchI GAGTC 2 cut(s) 56, 406
ScrFI CCNGG 2 cut(s) 237, 293
SduI GDGCHC 1 cut(s) 189
Sfr274I CTCGAG 1 cut(s) 401
SinI GGWCC 1 cut(s) 220
SlaI CTCGAG 1 cut(s) 401
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
SnaBI TACGTA 1 cut(s) 340
Sse9I AATT 1 cut(s) 207
SsiI CCGC 2 cut(s) 105, 154
SstI GAGCTC 1 cut(s) 189
StyD4I CCNGG 2 cut(s) 235, 291
TaaI ACNGT 4 cut(s) 98, 176, 336, 390
TaiI ACGT 4 cut(s) 285, 304, 342, 396
TaqI TCGA 2 cut(s) 371, 402
TasI AATT 1 cut(s) 207
TatI WGTACW 1 cut(s) 312
TauI GCSGC 1 cut(s) 108
TfiI GAWTC 1 cut(s) 193
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TspDTI ATGAA 3 cut(s) 17, 23, 38
TspGWI ACGGA 1 cut(s) 377
VpaK11BI GGWCC 1 cut(s) 220
XhoI CTCGAG 1 cut(s) 401
XmiI GTMKAC 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.