Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0013528

Physical Location & Seq

Genomic Coordinates Forward (+)

26633328 .. 26689442

Gene Structure 56115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0152200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4533 bp

ATGGAGCTTTTTCATTCCTCAATGCGCCTACTCTCGCACCACTCGTCCTTCATGTCTCCAGGTACCGATTTCCTTCTTAAACCCATTTTCATTCGTGGGTTTTCTGGATCATTACATCTCCTTCTGTTATTTGTGTTGCTTGTCTCTTGGTTGTGGAAGAAATTCAAGGTGGGTGATGTGGGAGGGGCCCCAAAAGAGGGGTCTAGGAATAGGACAACTCTGTACTACAGGCACACTCTAATATGTTGTCTTGCTGTTTCTGCTGTTAGTGTTGGCTTTTGTTTATTCAACTACTTCTCCTGGTATAAACATGTCTGGTCTGAAGAAAAGCTAGTGACCCTTTTTGATTTAGCAATTAGAACACTTAGTTGGGGTGCAGTTTTTGTTTACTTGCATACCCACTTCTCTAGTTGTGATGAACCAAAGTTTCCATTCTTACTCAGAGTTTGGTGGGGTTTTTACTTTTCTTTATCTTGCTATTGCCTTGTCGTAGACATTGTTCTTTACCAAAAACACGTTGCCTTACCCGTTCAATCTCTAGTTTCTGATGCTGCCTTCCTTGTCTCTGCTCTGTTCTTTATATATGTGGGGTTTATTGGGTCGAAAGAGGGTAGAGATACCCTTCTTGAGGAACCCCTTTTGAATGGTAGTAGAGATTCTAGTGTAGGTAACACTGCAGAATCAAATAAGTCCAAAGGGGATGATGCAACTGTGAAAATCCCTTTTTCAAATGCTGGGATTTTCAGCATCCTCACCTTTTCTTGGATGGGTCCTGTAATCGCGTTGGGTAATAAGAAAACATTAGACCTTGAAGATGTTCCTGAACTAGACAAGGGGGATAGTGTAGTTGGGTCCTTTCCGGTTTTTAGAAATAAGCTCGAGTCGGACTGTGGTGCTCTTAGCAGAGTGACCACGCTTCATCTGGTGAAGGCATTAATCTTCTCGGCCTGGAGAGAGATTCTTTTGACAGCTTTCTTTGTGCTTCTTAAAACAATGGCTTCTTATGTTGGCCCATATCTAATCAACACATTTGTGCAATACCTTTATGGGCGGCGTGAGTTTGAATACGAGGGCTATGCTTTCGTTTCTGCCTTTTTGGTGGCGAAGCTCGTTCAGTGCCTCTCTCGGAGGCACTGGTTCTTTAGGTTGCAGCAGATAGGAGTAAGAGTAAGAGCTGTACTGGTTACCATGATCTATAATAAGGGTTTGACCCTGTCTTGCCAGTCCAAGCAGTGCCACACTAGTGGTGAGATTATCAATTTTATGACTGTTGATGCTGAGAGGGTTGGTGACTTCACTTGGTACATGCATGACCCATGGATGATCGTTCTACAAGTTGTTTTAGCCCTCTTAATTTTGTATAAAAATCTTGGCCTTGCTGTAATTGCAACTTTAGTTGCAACAATAGTTGTTATGTTGGCAAATGTTCCTTTGGGGAAATTGCAAGAGAAGTTTCAGGACAAATTAATGGAGTCAAAGGACAGAAGGATGAACGCAACATCGGAGATTTTAAGGAACATGCGGATTCTCAAGCTGCAGGCATGGGAGATGAAGTTTTTGTCTAAGATTATTGACCTCAGGAAGACTGAGACAGGATGGTTACGAAAGTTTGTTTATACATCGGCCATGACCACATTTGTCTTCTGGGGTGCCCCCACATTTGTGTCTGTGGTCACTTTTCTTACTTGCATGCTTTTGGGCATCCCACTGGAATCAGGGAAGATCTTATCTGCACTTGCAACGTTCAGAATTCTTCAAGAGCCCATCTACAATCTTCCAGACACAGTTTCAATGATAGCACAGACAAAGGTATCCCTTGATAGAATTGCATCGTTCCTTTCTCTTGATGAGTTGAAGCCTGATGTTATAGAGAACCTTCCTAGAGGTAGTTCTGATACTGCAATTGAAATATTAGATGCAAATTTCTCTTGGGAATTATCTTCGCCTAACCCTACATTGAAGGATATAAATCTTAAAGTTAGCCATGGTATGAAGGTTGCTGTTTGTGGTACTGTTGGCTCAGGCAAATCAAGCTTACTTTCTTGTATTCTGGGAGAAGTTCCCAAGATATCTGGGACTCTTACGTTGTGTGGGACAAAGGCCTATGTTTCTCAGTCACCATGGATACAGAGTGGTAAGATAGAACAAAACATATTGTTTGGTAAAGAGATGGACAGAGAAAGGTACGAGAGGGTTCTTGAAGCATGTTCGTTGAAGAAGGACCTGGAAATTCTATCATTTGGTGATCAGACGGTTATAGGGGAAAGGGGAATCAATTTAAGTGGAGGTCAGAAGCAAAGAATACAAATTGCACGAGCTTTGTACCAAGATGCTGATATCTATCTGTTTGATGATCCTTTTAGTGCTGTTGATGCTCATACAGGATCTCACCTTTTCAAGGAATGCTTGATGGGCCTCTTGAGTTCCAAAACAGTAATCTATGTCACTCATCAAGTGGAGTTCTTACCTGCTGCTGATATTGTCTTGGTCATGAAAGACGGAAAGATCACTCAAGCTGGAAAGTTCAATGACATTCTTAATTCAGGAACTGATTTTATGGATCTTGTGGGAGCACACAATGAAGCTTTGTCTGCGCTTGATTCTGTTGGGGTAGGGCCAGTTGAAATAATAAGCATCAGCAAAAAAGATAACAATTCGGCTAGTACTACTGGAGCTGTCCAAAAAGTAGACAACAGAGATGTTCAAGATAGTAAAATAGATGATTTAGGCGTGCCAAAGGGGCAGCTTGTTCAAGAAGAAGAGAGAGAGAAAGGTAAGGTTGGGTTTTCAGTGTACTGGAAATACATTACCACAGCATATGGAGGAGCTCTCGTGCCTTTTATATTACTTGCACAGATTCTCTTTCAACTCTTTCAAATTGGAAGCAATTACTGGATGGTTTGGGCAACTCCTGTGTCAGCAGACGTGAAACCAACTGTTACAAGCTCTGTGCTTATAATTGTCTATGTGGCTTTGGCTGTTGGAAGTTCTTTTTGTATCCTTTTCAGATCTCTGCTTCTCTCAACAGCTGGGTACAAGACAGCCACTATACTCTTCAATAAAATGCACTTGTGCATATTCCGTGCTCCCATGTCATTCTTCGATGCCACTCCAAGTGGACGAATCTTAAACAGAGCTTCTACAGACCAAAATACAGTGGACACGAACATTTCAAATCAAATTGGGGCCTTTGCCTTCTCAATGATACAGCTTTTAGGAATTATTGCAGTGATGTCTCAGGTGGCATGGCAGGTTTTCATCATATTTATACCTGTGATTACAGCCTGTGTTTGGTATCAGCAATATTACATACCTTCAGCACGAGAACTAGCAAGATTGGTTGGAGTATGCAAAGCTCCTGTGATACAACATTTTGCAGAAACAATTTCAGGGTCAACTACTATTAGGAGCTTCGATCAAGAATCTAGATTTCGAGATACCAACATGAAACTGATGGATGGATATGGTCGGCCAAAGTTCTACACAGCTGCTGCAATGGAATGGCTATGCTTTCGCTTGGATGTGTTGTCATCCATTACATTTGCATTCTGTTTAATTTTCTTGATCTCTGTTCCAGAAGGAGTGATAGATCCAGGCATTGCGGGCTTAGCCGTCACATATGGACTTAACCTAAACATGTTACAAGCTTGGGTTATATGGAACCTTTGCAATATGGAGAACAAGATAATATCTGTGGAGAGAATACTACAGTATACTACTTGTATACCAAGTGAACCTCCTCTGGTAATAGATTCTAAAAGACCTGATCATTCCTGGCCATCACAAGGAAAAGTTGATATGCATGATCTTCAGGTGCGGTATGCTCCACACATGCCACTTGTGTTGCGGGGTCTCACATGTTCCTTCCCTGGAGGAATGAAAACTGGGATTGTGGGGAGAACTGGCAGTGGAAAGTCAACTCTCATACAAACTCTTTTCCGAATTGTCGATCCTGCTGCTGGCCGGATTTTGATAGATGGCATCAATATCTCTTCTATTGGATTGCATGATCTGCGGTCTAGGCTAAGCATTATCCCTCAGGACCCAACCATGTTTGAAGGAACTGTAAGAAGCAATCTGGACCCACTTGAAGAGTATACAGATGAACAAATTTGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAGTTAGGAAGAAACAAGGGAAGCTTGATTCTGCAGTGAGTGAAAATGGAGAGAACTGGAGTATGGGTCAGAGGCAGCTGGTTTGCCTGGGCCGTGTGCTCCTCAAGAAAAGTAAAGTCCTGGTGCTTGATGAAGCTACTGCATCTGTTGATACTGCTACAGATAATTTGATTCAGCAGACCCTTCGGCACCACTTTTCAGACTGTACTGTCATTACTATTGCGCATCGAATAACTTCTGTTCTTGACAGTGACATGGTTCTACTTCTAAGTCATGGGCTGATTGAGGAATGTGATTCTCCTGCAAGATTGCTAGAAAACAAGTCATCATCTTTTGCCCAACTCGTAGCAGAGTACACAATGAGATCGAATTCCACTTTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

1510

Amino Acids

168.42

Weight (kDa)

7.12

Isoelectric Point (pI)

35.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	321 - 588	6.4e-22	ABC transporter transmembrane region
ABC_tran	PF00005	653 - 787	1.5e-20	ABC transporter
ABC_membrane	PF00664	947 - 1189	1.4e-30	ABC transporter transmembrane region
ABC_tran	PF00005	1282 - 1430	2.8e-27	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06140
fragaria_vesca	FvH4_4g14510
malus_domestica	MD13G1183800.v1.1 MD16G1184200.v1.1
prunus_persica	Prupe.1G151600_v2.0.a1 Prupe.1G151600_v2.0.a1
pyrus_communis	pycom13g15860 pycom16g15470
rosa_chinensis	RchiOBHm_Chr4g0418321
rosa_laevigata	RLG00000007877
rosa_multiflora	Rmu_ssc0000153.1_g000004
rosa_roxburghii	Rroxscaffold_5G00361510
rosa_rugosa	Rorug04G0152200
rosa_samantha	Rh4AG213700 Rh4BG216700 Rh4CG225300 Rh4DG212200
rosa_wichuraiana	Rw4G018150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2957
AasI	GACNNNNNNGTC	1 cut(s)	4355
Acc16I	TGCGCA	1 cut(s)	4371
Acc36I	ACCTGC	2 cut(s)	2476, 3241
Acc65I	GGTACC	1 cut(s)	62
AccB1I	GGYRCC	3 cut(s)	62, 1649, 4335
AccI	GTMKAC	5 cut(s)	492, 2688, 3713, 3724, 4097
AccII	CGCG	1 cut(s)	782
AciI	CCGC	6 cut(s)	1051, 1522, 3602, 3817, 3847, 4015
AclI	AACGTT	1 cut(s)	1742
AclWI	GGATC	6 cut(s)	115, 2348, 2392, 2568, 3584, 3944
AcoI	YGGCCR	4 cut(s)	1623, 3470, 3776, 3961
AcsI	RAATTY	6 cut(s)	161, 1749, 1921, 2229, 4110, 4516
AcuI	CTGAAG	3 cut(s)	342, 3300, 3794
AfiI	CCNNNNNNNGG	8 cut(s)	196, 197, 628, 762, 2398, 3291, 3785, 3959
AflIII	ACRYGT	4 cut(s)	310, 514, 3636, 3857
AhlI	ACTAGT	1 cut(s)	1241
AjiI	CACGTC	1 cut(s)	2926
AjnI	CCWGG	9 cut(s)	58, 299, 947, 2223, 3592, 3773, 3868, 4233, 4266
AjuI	GAANNNNNNNTTGG	2 cut(s)	352, 384
AleI	CACNNNNGTG	3 cut(s)	1031, 1242, 1661
Alw21I	GWGCWC	5 cut(s)	898, 2575, 2830, 3088, 4248
Alw26I	GTCTC	6 cut(s)	60, 148, 568, 1583, 3240, 3857
AlwI	GGATC	6 cut(s)	115, 2348, 2392, 2568, 3584, 3944
AlwNI	CAGNNNCTG	2 cut(s)	2549, 3491
Ama87I	CYCGRG	1 cut(s)	878
ApaI	GGGCCC	1 cut(s)	190
ApeKI	GCWGC	9 cut(s)	551, 1150, 1534, 2471, 2743, 3488, 3491, 3956, 4222
ApoI	RAATTY	6 cut(s)	161, 1749, 1921, 2229, 4110, 4516
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
AseI	ATTAAT	2 cut(s)	935, 1466
Asp700I	GAANNNNTTC	3 cut(s)	161, 816, 4381
Asp718I	GGTACC	1 cut(s)	62
AspLEI	GCGC	3 cut(s)	27, 2596, 4372
AsuHPI	GGTGA	8 cut(s)	185, 745, 937, 1259, 1301, 2109, 2255, 2381
AvaI	CYCGRG	1 cut(s)	878
AvaII	GGWCC	5 cut(s)	770, 852, 2221, 4042, 4081
AxyI	CCTNAGG	2 cut(s)	1577, 4038
BaeGI	GKGCMC	2 cut(s)	190, 1654
BaeI	ACNNNNGTAYC	2 cut(s)	1794, 1827
BalI	TGGCCA	1 cut(s)	3778
BanI	GGYRCC	3 cut(s)	62, 1649, 4335
BanII	GRGCYC	3 cut(s)	190, 1764, 2830
BauI	CACGAG	3 cut(s)	2313, 2831, 3321
BbsI	GAAGAC	2 cut(s)	1589, 1633
Bbv12I	GWGCWC	5 cut(s)	898, 2575, 2830, 3088, 4248
BbvI	GCAGC	9 cut(s)	538, 1162, 1521, 2458, 2755, 3475, 3478, 3943, 4234
BceAI	ACGGC	2 cut(s)	3596, 4224
BcgI	CGANNNNNNTGC	6 cut(s)	1058, 1092, 3938, 3972, 4313, 4347
BciT130I	CCWGG	9 cut(s)	60, 301, 949, 2225, 3594, 3775, 3870, 4235, 4268
BciVI	GTATCC	3 cut(s)	1822, 2118, 3008
BclI	TGATCA	2 cut(s)	2245, 3766
BcoDI	GTCTC	6 cut(s)	60, 148, 568, 1583, 3240, 3857
BcuI	ACTAGT	1 cut(s)	1241
BfmI	CTRYAG	7 cut(s)	226, 675, 1535, 3141, 3707, 4179, 4305
BfuAI	ACCTGC	2 cut(s)	2476, 3241
BfuI	GTATCC	3 cut(s)	1822, 2118, 3008
BglI	GCCNNNNNGGC	1 cut(s)	2740
BglII	AGATCT	2 cut(s)	1722, 3008
BlpI	GCTNAGC	2 cut(s)	3607, 4025
BmcAI	AGTACT	1 cut(s)	2665
Bme1390I	CCNGG	9 cut(s)	60, 301, 949, 2225, 3594, 3775, 3870, 4235, 4268
Bme18I	GGWCC	5 cut(s)	770, 852, 2221, 4042, 4081
BmeT110I	CYCGRG	1 cut(s)	878
BmgBI	CACGTC	1 cut(s)	2926
BmrFI	CCNGG	9 cut(s)	60, 301, 949, 2225, 3594, 3775, 3870, 4235, 4268
BmrI	ACTGGG	1 cut(s)	3894
BmuI	ACTGGG	1 cut(s)	3894
BpiI	GAAGAC	2 cut(s)	1589, 1633
BplI	GAGNNNNNCTC	2 cut(s)	2814, 2846
BpmI	CTGGAG	5 cut(s)	42, 970, 2691, 3891, 4225
Bpu10I	CCTNAGC	1 cut(s)	2020
Bpu1102I	GCTNAGC	2 cut(s)	3607, 4025
BpuEI	CTTGAG	5 cut(s)	647, 1514, 2440, 2496, 4235
BsaBI	GATNNNNATC	2 cut(s)	1968, 2340
BsaI	GGTCTC	1 cut(s)	3857
BsaJI	CCNNGG	5 cut(s)	1316, 1984, 2120, 3868, 4234
BsaWI	WCCGGW	1 cut(s)	859
Bsc4I	CCNNNNNNNGG	8 cut(s)	196, 197, 628, 762, 2398, 3291, 3785, 3959
Bse21I	CCTNAGG	2 cut(s)	1577, 4038
Bse3DI	GCAATG	2 cut(s)	3501, 3597
Bse8I	GATNNNNATC	2 cut(s)	1968, 2340
BseBI	CCWGG	9 cut(s)	60, 301, 949, 2225, 3594, 3775, 3870, 4235, 4268
BseDI	CCNNGG	5 cut(s)	1316, 1984, 2120, 3868, 4234
BseJI	GATNNNNATC	2 cut(s)	1968, 2340
BseLI	CCNNNNNNNGG	8 cut(s)	196, 197, 628, 762, 2398, 3291, 3785, 3959
BseMI	GCAATG	2 cut(s)	3501, 3597
BseMII	CTCAG	8 cut(s)	454, 1269, 1578, 1591, 2034, 2126, 3251, 4052
BseRI	GAGGAG	3 cut(s)	2838, 3729, 4238
BseSI	GKGCMC	2 cut(s)	190, 1654
BseXI	GCAGC	9 cut(s)	538, 1162, 1521, 2458, 2755, 3475, 3478, 3943, 4234
BseYI	CCCAGC	2 cut(s)	734, 3029
BsgI	GTGCAG	2 cut(s)	396, 1716
Bsh1236I	CGCG	1 cut(s)	782
BshNI	GGYRCC	3 cut(s)	62, 1649, 4335
BsiHKAI	GWGCWC	5 cut(s)	898, 2575, 2830, 3088, 4248
BsiHKCI	CYCGRG	1 cut(s)	878
BsiSI	CCGG	2 cut(s)	860, 3964
BslFI	GGGAC	2 cut(s)	2089, 2107
BslI	CCNNNNNNNGG	8 cut(s)	196, 197, 628, 762, 2398, 3291, 3785, 3959
BsmAI	GTCTC	6 cut(s)	60, 148, 568, 1583, 3240, 3857
BsmFI	GGGAC	2 cut(s)	2089, 2107
BsmI	GAATGC	2 cut(s)	2408, 3545
Bso31I	GGTCTC	1 cut(s)	3857
BsoBI	CYCGRG	1 cut(s)	878
Bsp120I	GGGCCC	1 cut(s)	186
Bsp1286I	GDGCHC	8 cut(s)	190, 898, 1654, 1764, 2575, 2830, 3088, 4248
Bsp1720I	GCTNAGC	2 cut(s)	3607, 4025
Bsp19I	CCATGG	3 cut(s)	1316, 1984, 2120
BspACI	CCGC	6 cut(s)	1051, 1522, 3602, 3817, 3847, 4015
BspCNI	CTCAG	8 cut(s)	453, 1270, 1579, 1590, 2033, 2125, 3250, 4051
BspFNI	CGCG	1 cut(s)	782
BspHI	TCATGA	1 cut(s)	2490
BspMAI	CTGCAG	3 cut(s)	679, 1539, 4183
BspMI	ACCTGC	2 cut(s)	2476, 3241
BspPI	GGATC	6 cut(s)	115, 2348, 2392, 2568, 3584, 3944
BspT107I	GGYRCC	3 cut(s)	62, 1649, 4335
BspTNI	GGTCTC	1 cut(s)	3857
BsrDI	GCAATG	2 cut(s)	3501, 3597
BssECI	CCNNGG	5 cut(s)	1316, 1984, 2120, 3868, 4234
BssNAI	GTATAC	3 cut(s)	3714, 3725, 4098
BssSI	CACGAG	3 cut(s)	2313, 2831, 3321
BssT1I	CCWWGG	3 cut(s)	1316, 1984, 2120
Bst1107I	GTATAC	3 cut(s)	3714, 3725, 4098
Bst2BI	CACGAG	3 cut(s)	2313, 2831, 3321
Bst2UI	CCWGG	9 cut(s)	60, 301, 949, 2225, 3594, 3775, 3870, 4235, 4268
Bst6I	CTCTTC	4 cut(s)	2754, 3059, 3997, 4086
BstAPI	GCANNNNNTGC	1 cut(s)	4012
BstC8I	GCNNGC	5 cut(s)	1539, 1691, 2732, 3604, 3961
BstDSI	CCRYGG	3 cut(s)	1316, 1984, 2120
BstEII	GGTNACC	1 cut(s)	1183
BstENI	CCTNNNNNAGG	2 cut(s)	626, 2396
BstFNI	CGCG	1 cut(s)	782
BstHHI	GCGC	3 cut(s)	27, 2596, 4372
BstMAI	GTCTC	6 cut(s)	60, 148, 568, 1583, 3240, 3857
BstNI	CCWGG	9 cut(s)	60, 301, 949, 2225, 3594, 3775, 3870, 4235, 4268
BstNSI	RCATGY	8 cut(s)	314, 1309, 1522, 1693, 2208, 3640, 3835, 3861
BstPI	GGTNACC	1 cut(s)	1183
BstSCI	CCNGG	9 cut(s)	58, 299, 947, 2223, 3592, 3773, 3868, 4233, 4266
BstSFI	CTRYAG	7 cut(s)	226, 675, 1535, 3141, 3707, 4179, 4305
BstSLI	GKGCMC	2 cut(s)	190, 1654
BstUI	CGCG	1 cut(s)	782
BstV1I	GCAGC	9 cut(s)	538, 1162, 1521, 2458, 2755, 3475, 3478, 3943, 4234
BstV2I	GAAGAC	2 cut(s)	1589, 1633
BstX2I	RGATCY	5 cut(s)	1722, 2384, 2560, 3008, 3589
BstXI	CCANNNNNNTGG	1 cut(s)	1244
BstYI	RGATCY	5 cut(s)	1722, 2384, 2560, 3008, 3589
BstZ17I	GTATAC	3 cut(s)	3714, 3725, 4098
Bsu36I	CCTNAGG	2 cut(s)	1577, 4038
BsuI	GTATCC	3 cut(s)	1822, 2118, 3008
BtgI	CCRYGG	3 cut(s)	1316, 1984, 2120
BtrI	CACGTC	1 cut(s)	2926
BtsI	GCAGTG	5 cut(s)	672, 1238, 3234, 3913, 4188
BveI	ACCTGC	2 cut(s)	2476, 3241
Cac8I	GCNNGC	5 cut(s)	1539, 1691, 2732, 3604, 3961
CaiI	CAGNNNCTG	2 cut(s)	2549, 3491
CciI	TCATGA	1 cut(s)	2490
CfoI	GCGC	3 cut(s)	27, 2596, 4372
CspCI	CAANNNNNGTGG	4 cut(s)	2263, 2298, 3825, 3860
DrdI	GACNNNNNNGTC	1 cut(s)	4355
DseDI	GACNNNNNNGTC	1 cut(s)	4355
EaeI	YGGCCR	4 cut(s)	1623, 3470, 3776, 3961
Eam1104I	CTCTTC	4 cut(s)	2754, 3059, 3997, 4086
EarI	CTCTTC	4 cut(s)	2754, 3059, 3997, 4086
Ecl136II	GAGCTC	1 cut(s)	2828
Eco130I	CCWWGG	3 cut(s)	1316, 1984, 2120
Eco147I	AGGCCT	1 cut(s)	2102
Eco24I	GRGCYC	3 cut(s)	190, 1764, 2830
Eco31I	GGTCTC	1 cut(s)	3857
Eco32I	GATATC	2 cut(s)	2070, 2338
Eco47I	GGWCC	5 cut(s)	770, 852, 2221, 4042, 4081
Eco53kI	GAGCTC	1 cut(s)	2828
Eco57I	CTGAAG	3 cut(s)	342, 3300, 3794
Eco81I	CCTNAGG	2 cut(s)	1577, 4038
Eco88I	CYCGRG	1 cut(s)	878
Eco91I	GGTNACC	1 cut(s)	1183
EcoICRI	GAGCTC	1 cut(s)	2828
EcoNI	CCTNNNNNAGG	2 cut(s)	626, 2396
EcoO109I	RGGNCCY	7 cut(s)	186, 187, 770, 852, 2221, 3186, 4042
EcoO65I	GGTNACC	1 cut(s)	1183
EcoRI	GAATTC	2 cut(s)	1749, 4516
EcoRII	CCWGG	9 cut(s)	58, 299, 947, 2223, 3592, 3773, 3868, 4233, 4266
EcoRV	GATATC	2 cut(s)	2070, 2338
EcoT14I	CCWWGG	3 cut(s)	1316, 1984, 2120
EcoT22I	ATGCAT	2 cut(s)	1311, 3804
EcoT38I	GRGCYC	3 cut(s)	190, 1764, 2830
ErhI	CCWWGG	3 cut(s)	1316, 1984, 2120
FalI	AAGNNNNNCTT	4 cut(s)	2390, 2422, 4155, 4187
FaqI	GGGAC	2 cut(s)	2089, 2107
FauI	CCCGC	2 cut(s)	3595, 3840
FauNDI	CATATG	2 cut(s)	2818, 3619
FbaI	TGATCA	2 cut(s)	2245, 3766
FblI	GTMKAC	5 cut(s)	492, 2688, 3713, 3724, 4097
FriOI	GRGCYC	3 cut(s)	190, 1764, 2830
FspI	TGCGCA	1 cut(s)	4371
GlaI	GCGC	3 cut(s)	26, 2595, 4371
GsaI	CCCAGC	2 cut(s)	738, 3033
GsuI	CTGGAG	5 cut(s)	42, 970, 2691, 3891, 4225
HapII	CCGG	2 cut(s)	860, 3964
HhaI	GCGC	3 cut(s)	27, 2596, 4372
Hin6I	GCGC	3 cut(s)	25, 2594, 4370
HinP1I	GCGC	3 cut(s)	25, 2594, 4370
HincII	GTYRAC	2 cut(s)	3396, 3918
HindII	GTYRAC	2 cut(s)	3396, 3918
HindIII	AAGCTT	4 cut(s)	2032, 2583, 3645, 4169
HpaII	CCGG	2 cut(s)	860, 3964
HphI	GGTGA	8 cut(s)	185, 745, 937, 1259, 1301, 2109, 2255, 2381
HpyCH4IV	ACGT	4 cut(s)	516, 1742, 2084, 2925
HpySE526I	ACGT	4 cut(s)	516, 1742, 2084, 2925
HspAI	GCGC	3 cut(s)	25, 2594, 4370
KpnI	GGTACC	1 cut(s)	66
Ksp22I	TGATCA	2 cut(s)	2245, 3766
LmnI	GCTCC	9 cut(s)	4, 2570, 2672, 2825, 3091, 3361, 3408, 3829, 4251
Lsp1109I	GCAGC	9 cut(s)	538, 1162, 1521, 2458, 2755, 3475, 3478, 3943, 4234
MaeII	ACGT	4 cut(s)	516, 1742, 2084, 2925
MfeI	CAATTG	1 cut(s)	1902
MflI	RGATCY	5 cut(s)	1722, 2384, 2560, 3008, 3589
MhlI	GDGCHC	8 cut(s)	190, 898, 1654, 1764, 2575, 2830, 3088, 4248
MlsI	TGGCCA	1 cut(s)	3778
MluNI	TGGCCA	1 cut(s)	3778
MlyI	GAGTC	3 cut(s)	890, 1481, 2071
MmeI	TCCRAC	3 cut(s)	864, 2962, 3322
Mox20I	TGGCCA	1 cut(s)	3778
Mph1103I	ATGCAT	2 cut(s)	1311, 3804
MroXI	GAANNNNTTC	3 cut(s)	161, 816, 4381
MscI	TGGCCA	1 cut(s)	3778
MslI	CAYNNNNRTG	3 cut(s)	1031, 1242, 1661
Msp20I	TGGCCA	1 cut(s)	3778
MspA1I	CMGCKG	3 cut(s)	3029, 3488, 4225
MspI	CCGG	2 cut(s)	860, 3964
MspR9I	CCNGG	9 cut(s)	60, 301, 949, 2225, 3594, 3775, 3870, 4235, 4268
MunI	CAATTG	1 cut(s)	1902
Mva1269I	GAATGC	2 cut(s)	2408, 3545
MvaI	CCWGG	9 cut(s)	60, 301, 949, 2225, 3594, 3775, 3870, 4235, 4268
MvnI	CGCG	1 cut(s)	782
NcoI	CCATGG	3 cut(s)	1316, 1984, 2120
NdeI	CATATG	2 cut(s)	2818, 3619
NmeAIII	GCCGAG	1 cut(s)	923
NmuCI	GTSAC	8 cut(s)	334, 907, 1289, 1672, 2115, 2443, 3613, 4397
NsbI	TGCGCA	1 cut(s)	4371
NsiI	ATGCAT	2 cut(s)	1311, 3804
NspI	RCATGY	8 cut(s)	314, 1309, 1522, 1693, 2208, 3640, 3835, 3861
OliI	CACNNNNGTG	3 cut(s)	1031, 1242, 1661
PaeI	GCATGC	1 cut(s)	1693
PaeR7I	CTCGAG	1 cut(s)	878
PagI	TCATGA	1 cut(s)	2490
PceI	AGGCCT	1 cut(s)	2102
PciI	ACATGT	3 cut(s)	310, 3636, 3857
PcsI	WCGNNNNNNNCGW	1 cut(s)	41
PctI	GAATGC	2 cut(s)	2408, 3545
PdmI	GAANNNNTTC	3 cut(s)	161, 816, 4381
PflFI	GACNNNGTC	1 cut(s)	1213
PleI	GAGTC	3 cut(s)	889, 1480, 2071
PpsI	GAGTC	3 cut(s)	889, 1480, 2071
PpuMI	RGGWCCY	4 cut(s)	770, 852, 2221, 4042
PscI	ACATGT	3 cut(s)	310, 3636, 3857
PshBI	ATTAAT	2 cut(s)	935, 1466
PsiI	TTATAA	1 cut(s)	2957
Psp124BI	GAGCTC	1 cut(s)	2830
Psp1406I	AACGTT	1 cut(s)	1742
Psp5II	RGGWCCY	4 cut(s)	770, 852, 2221, 4042
Psp6I	CCWGG	9 cut(s)	58, 299, 947, 2223, 3592, 3773, 3868, 4233, 4266
PspEI	GGTNACC	1 cut(s)	1183
PspFI	CCCAGC	2 cut(s)	734, 3029
PspGI	CCWGG	9 cut(s)	58, 299, 947, 2223, 3592, 3773, 3868, 4233, 4266
PspOMI	GGGCCC	1 cut(s)	186
PspPPI	RGGWCCY	4 cut(s)	770, 852, 2221, 4042
PspXI	VCTCGAGB	1 cut(s)	878
PsrI	GAACNNNNNNTAC	2 cut(s)	483, 515
PstI	CTGCAG	3 cut(s)	679, 1539, 4183
PstNI	CAGNNNCTG	2 cut(s)	2549, 3491
PsuI	RGATCY	5 cut(s)	1722, 2384, 2560, 3008, 3589
PsyI	GACNNNGTC	1 cut(s)	1213
PvuII	CAGCTG	3 cut(s)	3029, 3488, 4225
RseI	CAYNNNNRTG	3 cut(s)	1031, 1242, 1661
SacI	GAGCTC	1 cut(s)	2830
ScaI	AGTACT	1 cut(s)	2665
SchI	GAGTC	3 cut(s)	890, 1481, 2071
ScrFI	CCNGG	9 cut(s)	60, 301, 949, 2225, 3594, 3775, 3870, 4235, 4268
SduI	GDGCHC	8 cut(s)	190, 898, 1654, 1764, 2575, 2830, 3088, 4248
SfcI	CTRYAG	7 cut(s)	226, 675, 1535, 3141, 3707, 4179, 4305
Sfr274I	CTCGAG	1 cut(s)	878
SinI	GGWCC	5 cut(s)	770, 852, 2221, 4042, 4081
SlaI	CTCGAG	1 cut(s)	878
SmiMI	CAYNNNNRTG	3 cut(s)	1031, 1242, 1661
SmlI	CTYRAG	6 cut(s)	626, 878, 1529, 2419, 2511, 4250
SmoI	CTYRAG	6 cut(s)	626, 878, 1529, 2419, 2511, 4250
SpeI	ACTAGT	1 cut(s)	1241
SphI	GCATGC	1 cut(s)	1693
SseBI	AGGCCT	1 cut(s)	2102
SsiI	CCGC	6 cut(s)	1051, 1522, 3602, 3817, 3847, 4015
SspI	AATATT	2 cut(s)	1911, 3305
SstI	GAGCTC	1 cut(s)	2830
StuI	AGGCCT	1 cut(s)	2102
StyD4I	CCNGG	9 cut(s)	58, 299, 947, 2223, 3592, 3773, 3868, 4233, 4266
StyI	CCWWGG	3 cut(s)	1316, 1984, 2120
TaiI	ACGT	4 cut(s)	519, 1745, 2087, 2928
TaqI	TCGA	8 cut(s)	602, 879, 3102, 3414, 3433, 3948, 4375, 4514
TatI	WGTACW	6 cut(s)	222, 1177, 2663, 2793, 4352, 4500
TauI	GCSGC	1 cut(s)	1054
TseFI	GTSAC	8 cut(s)	334, 907, 1289, 1672, 2115, 2443, 3613, 4397
TseI	GCWGC	9 cut(s)	551, 1150, 1534, 2471, 2743, 3488, 3491, 3956, 4222
Tsp45I	GTSAC	8 cut(s)	334, 907, 1289, 1672, 2115, 2443, 3613, 4397
TspGWI	ACGGA	2 cut(s)	2514, 3071
Tth111I	GACNNNGTC	1 cut(s)	1213
VpaK11BI	GGWCC	5 cut(s)	770, 852, 2221, 4042, 4081
VspI	ATTAAT	2 cut(s)	935, 1466
XagI	CCTNNNNNAGG	2 cut(s)	626, 2396
XapI	RAATTY	6 cut(s)	161, 1749, 1921, 2229, 4110, 4516
XbaI	TCTAGA	1 cut(s)	3425
XceI	RCATGY	8 cut(s)	314, 1309, 1522, 1693, 2208, 3640, 3835, 3861
XcmI	CCANNNNNNNNNTGG	1 cut(s)	919
XhoI	CTCGAG	1 cut(s)	878
XmiI	GTMKAC	5 cut(s)	492, 2688, 3713, 3724, 4097
XmnI	GAANNNNTTC	3 cut(s)	161, 816, 4381
ZrmI	AGTACT	1 cut(s)	2665
Zsp2I	ATGCAT	2 cut(s)	1311, 3804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.