RchiOBHm_Chr4g0418321

E3 ubiquitin-protein ligase LUL4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0013528
Physical Location & Seq
Reverse (-)
43738612 .. 43742874
4263 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38831

Sequence Viewer

Length: 1221 bp
ATGGGGATTTCTTTCAGCAGCAACCGAAGACGTAACAACTACTACCAACACCCGCCGCCGCCTCAGCCCCTCTACCTCTCCAATCCTCACTACTACCCCTCCGACCCACCCTCTTTCTCTCCGCCTCCGCCGCCGCCGCCGCCTCCTCCGCCGCCGGTGACTTCTTTCTCTTCCTCCTCCTCCTCCTCTTCTTCTTCCGCCACCTACCCAGAACCCAATTCCGCCACCCCTTACACCGCGCCGCCGCCGCCGCCGCCCAGGGCTCCATACCAGGGCTACCCTCTTCCGCCGCCGCCGCCGCAGTCGCATTACTGCTACGGTCAGTACAATTCTTGCAACCACGCGAATCCGATGATGGGTCGGTTCAGTTACAACCACAATTACCAGCCTTACTATGGTAATCAGGCTAGTGGGTGGCCGGCGATGCGGCCTCCGGTGGCCCCCCTTTATCCTCCGCCGCCGTACGTGGAGCACCAGAGTGCCAAGAAGGTGAAGAATGACGTCAACGTGCGTAAGGACACGTTGAGGCTGGAGATTGATGAGCAGAACCCTGATCAGCATTTGGTCTCGTTCGTTTTCGATGCCTTGTATGATGGGAGCATTACTATTCTCTACTTTGCCAAGGAAGAGGCAGATTGTACATTTGTTCCACTATTTCCTGAAGCATTTACACCGGTGCAAGTCCCTTTTCAGAAAGGAGTAGGCCAGAAATTTTGTCAGCCCTCAGGAACAGGCATCGATTTAGGCTTCTTTGAGTTGGATGATCTGTCAAAACCCTCACCTGGAGAAGATGTATTCCCACTTGTAATATCTGCGGAAACACGTACGCCGCCTGATTCAATCGACCATATTGGTGAGCCTGTCCAAGATGCATCTCCTCGTATGCAGATCACTCAAGCTGTGCTAGAAAAAAATAATGGTGACCCTTTCCAAGTGAAAGTAATTAAGCAGATACTGTGGATTGATGAAGTTCGCTATGAACTACGTGAGATATATGGAATTGCAACCTCAGCAGTGGAAGGCTTTGATGACAATGACCCTGGGAAGGAGTGTGTAATATGCATGACCGAACCGAAGGACACTGCTGTATTACCTTGTCGACATATGTGTATGTGCAGTGACTGTGCAAAAGAATTGAGGATTCAATCCAATAAATGCCCCATTTGCCGACAACCCATTGAAGAACTTATAGAGATAAAGATGAATAAAAGCCAGCAATGA

Protein Analysis

406

Amino Acids

45.36

Weight (kDa)

5.24

Isoelectric Point (pI)

70.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNF157-like_N PF26192 168 - 328 1.6e-70 RNF157-like N-terminal domain
zf-C3HC4_3 PF13920 349 - 395 8.8e-18 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 350 - 390 1.6e-07 Ring finger domain
Prok-RING_4 PF14447 351 - 394 2.7e-06 Prokaryotic RING finger family 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06140
fragaria_vesca FvH4_4g14510
malus_domestica MD13G1183800.v1.1 MD16G1184200.v1.1
prunus_persica Prupe.1G151600_v2.0.a1 Prupe.1G151600_v2.0.a1
pyrus_communis pycom13g15860 pycom16g15470
rosa_chinensis RchiOBHm_Chr4g0418321
rosa_laevigata RLG00000007877
rosa_multiflora Rmu_ssc0000153.1_g000004
rosa_roxburghii Rroxscaffold_5G00361510
rosa_rugosa Rorug04G0152200
rosa_samantha Rh4AG213700 Rh4BG216700 Rh4CG225300 Rh4DG212200
rosa_wichuraiana Rw4G018150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 504
AccI GTMKAC 1 cut(s) 1099
AccII CGCG 2 cut(s) 239, 344
AcoI YGGCCR 1 cut(s) 416
AcsI RAATTY 1 cut(s) 710
AcuI CTGAAG 1 cut(s) 681
AcyI GRCGYC 1 cut(s) 501
AfaI GTAC 4 cut(s) 326, 464, 640, 826
AfiI CCNNNNNNNGG 5 cut(s) 272, 356, 395, 782, 1045
AflIII ACRYGT 2 cut(s) 519, 821
AgeI ACCGGT 1 cut(s) 673
AgsI TTSAA 3 cut(s) 840, 1145, 1181
AjnI CCWGG 4 cut(s) 257, 270, 781, 1039
AleI CACNNNNGTG 1 cut(s) 477
AluBI AGCT 1 cut(s) 899
AluI AGCT 1 cut(s) 899
Alw21I GWGCWC 1 cut(s) 474
Alw26I GTCTC 1 cut(s) 571
AlwNI CAGNNNCTG 2 cut(s) 955, 1122
AoxI GGCC 4 cut(s) 416, 428, 438, 703
ApeKI GCWGC 1 cut(s) 18
ApoI RAATTY 1 cut(s) 710
AsiGI ACCGGT 1 cut(s) 673
AspLEI GCGC 1 cut(s) 241
AspS9I GGNCC 1 cut(s) 439
AsuHPI GGTGA 5 cut(s) 169, 502, 771, 866, 932
AxyI CCTNAGG 1 cut(s) 724
BanII GRGCYC 1 cut(s) 265
BbsI GAAGAC 1 cut(s) 34
Bbv12I GWGCWC 1 cut(s) 474
BbvCI CCTCAGC 2 cut(s) 63, 1009
BbvI GCAGC 1 cut(s) 30
BccI CCATC 2 cut(s) 349, 587
BceAI ACGGC 1 cut(s) 445
BciT130I CCWGG 4 cut(s) 259, 272, 783, 1041
BclI TGATCA 1 cut(s) 553
BcoDI GTCTC 1 cut(s) 571
BfaI CTAG 2 cut(s) 408, 905
Bme1390I CCNGG 4 cut(s) 259, 272, 783, 1041
BmgT120I GGNCC 1 cut(s) 439
BmiI GGNNCC 2 cut(s) 264, 441
BmrFI CCNGG 4 cut(s) 259, 272, 783, 1041
BmsI GCATC 5 cut(s) 414, 571, 744, 859, 881
BpiI GAAGAC 1 cut(s) 34
BpmI CTGGAG 2 cut(s) 551, 804
Bpu10I CCTNAGC 2 cut(s) 63, 1009
BpuEI CTTGAG 1 cut(s) 879
Bsa29I ATCGAT 1 cut(s) 738
BsaAI YACGTR 3 cut(s) 466, 824, 986
BsaHI GRCGYC 1 cut(s) 501
BsaI GGTCTC 1 cut(s) 571
BsaJI CCNNGG 6 cut(s) 257, 258, 271, 621, 1039, 1040
BsaWI WCCGGW 2 cut(s) 433, 673
BsaXI ACNNNNNCTCC 4 cut(s) 83, 113, 777, 807
Bsc4I CCNNNNNNNGG 5 cut(s) 272, 356, 395, 782, 1045
Bse118I RCCGGY 3 cut(s) 154, 418, 673
Bse21I CCTNAGG 1 cut(s) 724
BseBI CCWGG 4 cut(s) 259, 272, 783, 1041
BseCI ATCGAT 1 cut(s) 738
BseDI CCNNGG 6 cut(s) 257, 258, 271, 621, 1039, 1040
BseGI GGATG 1 cut(s) 766
BseLI CCNNNNNNNGG 5 cut(s) 272, 356, 395, 782, 1045
BseMII CTCAG 3 cut(s) 77, 738, 1023
BseRI GAGGAG 6 cut(s) 135, 166, 169, 172, 175, 867
BseXI GCAGC 1 cut(s) 30
BsgI GTGCAG 1 cut(s) 1135
Bsh1236I CGCG 2 cut(s) 239, 344
BshFI GGCC 4 cut(s) 418, 430, 440, 705
BshTI ACCGGT 1 cut(s) 673
BshVI ATCGAT 1 cut(s) 738
BsiHKAI GWGCWC 1 cut(s) 474
BsiSI CCGG 4 cut(s) 155, 419, 434, 674
BsiWI CGTACG 2 cut(s) 462, 824
BslFI GGGAC 1 cut(s) 668
BslI CCNNNNNNNGG 5 cut(s) 272, 356, 395, 782, 1045
BsmAI GTCTC 1 cut(s) 571
BsmFI GGGAC 1 cut(s) 668
BsnI GGCC 4 cut(s) 418, 430, 440, 705
Bso31I GGTCTC 1 cut(s) 571
Bsp1286I GDGCHC 2 cut(s) 265, 474
Bsp1407I TGTACA 1 cut(s) 638
Bsp143I GATC 3 cut(s) 553, 763, 888
BspANI GGCC 4 cut(s) 418, 430, 440, 705
BspCNI CTCAG 3 cut(s) 76, 737, 1022
BspDI ATCGAT 1 cut(s) 738
BspFNI CGCG 2 cut(s) 239, 344
BspLI GGNNCC 2 cut(s) 264, 441
BspTNI GGTCTC 1 cut(s) 571
BsrFI RCCGGY 3 cut(s) 154, 418, 673
BsrGI TGTACA 1 cut(s) 638
BssAI RCCGGY 3 cut(s) 154, 418, 673
BssECI CCNNGG 6 cut(s) 257, 258, 271, 621, 1039, 1040
BssMI GATC 3 cut(s) 553, 763, 888
BssNI GRCGYC 1 cut(s) 501
BssT1I CCWWGG 1 cut(s) 621
Bst2UI CCWGG 4 cut(s) 259, 272, 783, 1041
Bst4CI ACNGT 3 cut(s) 320, 957, 1124
Bst6I CTCTTC 4 cut(s) 175, 193, 288, 621
BstACI GRCGYC 1 cut(s) 501
BstAUI TGTACA 1 cut(s) 638
BstBAI YACGTR 3 cut(s) 466, 824, 986
BstC8I GCNNGC 2 cut(s) 420, 1214
BstDEI CTNAG 3 cut(s) 63, 724, 1009
BstEII GGTNACC 1 cut(s) 920
BstF5I GGATG 1 cut(s) 766
BstFNI CGCG 2 cut(s) 239, 344
BstHHI GCGC 1 cut(s) 241
BstKTI GATC 3 cut(s) 556, 766, 891
BstMAI GTCTC 1 cut(s) 571
BstMBI GATC 3 cut(s) 553, 763, 888
BstNI CCWGG 4 cut(s) 259, 272, 783, 1041
BstPI GGTNACC 1 cut(s) 920
BstSCI CCNGG 4 cut(s) 257, 270, 781, 1039
BstUI CGCG 2 cut(s) 239, 344
BstV1I GCAGC 1 cut(s) 30
BstV2I GAAGAC 1 cut(s) 34
Bsu15I ATCGAT 1 cut(s) 738
Bsu36I CCTNAGG 1 cut(s) 724
BsuRI GGCC 4 cut(s) 418, 430, 440, 705
BsuTUI ATCGAT 1 cut(s) 738
BtgZI GCGATG 1 cut(s) 437
BtsCI GGATG 1 cut(s) 766
BtsI GCAGTG 3 cut(s) 1020, 1080, 1123
BtsIMutI CAGTG 3 cut(s) 1020, 1080, 1123
Cac8I GCNNGC 2 cut(s) 420, 1214
CaiI CAGNNNCTG 2 cut(s) 955, 1122
CfoI GCGC 1 cut(s) 241
Cfr10I RCCGGY 3 cut(s) 154, 418, 673
Cfr13I GGNCC 1 cut(s) 439
ClaI ATCGAT 1 cut(s) 738
Csp6I GTAC 4 cut(s) 325, 463, 639, 825
CspAI ACCGGT 1 cut(s) 673
CviAII CATG 1 cut(s) 1063
CviQI GTAC 4 cut(s) 325, 463, 639, 825
DdeI CTNAG 3 cut(s) 63, 724, 1009
DpnI GATC 3 cut(s) 555, 765, 890
DpnII GATC 3 cut(s) 553, 763, 888
EaeI YGGCCR 1 cut(s) 416
Eam1104I CTCTTC 4 cut(s) 175, 193, 288, 621
EarI CTCTTC 4 cut(s) 175, 193, 288, 621
EciI GGCGGA 7 cut(s) 111, 117, 138, 187, 211, 276, 444
Eco130I CCWWGG 1 cut(s) 621
Eco24I GRGCYC 1 cut(s) 265
Eco31I GGTCTC 1 cut(s) 571
Eco57I CTGAAG 1 cut(s) 681
Eco81I CCTNAGG 1 cut(s) 724
Eco91I GGTNACC 1 cut(s) 920
EcoO65I GGTNACC 1 cut(s) 920
EcoRII CCWGG 4 cut(s) 257, 270, 781, 1039
EcoT14I CCWWGG 1 cut(s) 621
EcoT22I ATGCAT 2 cut(s) 874, 1064
EcoT38I GRGCYC 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 621
FaeI CATG 1 cut(s) 1066
FaqI GGGAC 1 cut(s) 668
FatI CATG 1 cut(s) 1062
FauI CCCGC 1 cut(s) 60
FauNDI CATATG 1 cut(s) 1104
FbaI TGATCA 1 cut(s) 553
FblI GTMKAC 1 cut(s) 1099
FokI GGATG 1 cut(s) 773
FriOI GRGCYC 1 cut(s) 265
FspBI CTAG 2 cut(s) 408, 905
GlaI GCGC 1 cut(s) 240
GsuI CTGGAG 2 cut(s) 551, 804
HaeIII GGCC 4 cut(s) 418, 430, 440, 705
HapII CCGG 4 cut(s) 155, 419, 434, 674
HhaI GCGC 1 cut(s) 241
Hin1I GRCGYC 1 cut(s) 501
Hin1II CATG 1 cut(s) 1066
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HincII GTYRAC 2 cut(s) 505, 1100
HindII GTYRAC 2 cut(s) 505, 1100
HinfI GANTC 3 cut(s) 346, 836, 1141
HpaII CCGG 4 cut(s) 155, 419, 434, 674
HphI GGTGA 5 cut(s) 169, 502, 771, 866, 932
Hpy166II GTNNAC 2 cut(s) 505, 1100
Hpy188I TCNGA 3 cut(s) 103, 351, 693
Hpy188III TCNNGA 2 cut(s) 659, 726
Hpy8I GTNNAC 2 cut(s) 505, 1100
HpyAV CCTTC 4 cut(s) 481, 1013, 1039, 1069
HpyCH4III ACNGT 3 cut(s) 320, 957, 1124
HpyCH4IV ACGT 7 cut(s) 31, 465, 501, 507, 521, 823, 985
HpyCH4V TGCA 8 cut(s) 336, 679, 872, 886, 1004, 1062, 1116, 1127
HpyF3I CTNAG 3 cut(s) 63, 724, 1009
HpySE526I ACGT 7 cut(s) 31, 465, 501, 507, 521, 823, 985
Hsp92I GRCGYC 1 cut(s) 501
Hsp92II CATG 1 cut(s) 1066
HspAI GCGC 1 cut(s) 239
KroI GCCGGC 1 cut(s) 418
KroNI GCCGGC 1 cut(s) 420
Ksp22I TGATCA 1 cut(s) 553
Kzo9I GATC 3 cut(s) 553, 763, 888
LmnI GCTCC 3 cut(s) 268, 469, 597
Lsp1109I GCAGC 1 cut(s) 30
LweI GCATC 5 cut(s) 414, 571, 744, 859, 881
MaeI CTAG 2 cut(s) 408, 905
MaeII ACGT 7 cut(s) 31, 465, 501, 507, 521, 823, 985
MaeIII GTNAC 5 cut(s) 32, 157, 368, 920, 1118
MalI GATC 3 cut(s) 555, 765, 890
MboI GATC 3 cut(s) 553, 763, 888
MhlI GDGCHC 2 cut(s) 265, 474
MluCI AATT 7 cut(s) 217, 328, 379, 710, 942, 999, 1133
MmeI TCCRAC 2 cut(s) 126, 738
Mph1103I ATGCAT 2 cut(s) 874, 1064
MroNI GCCGGC 1 cut(s) 418
MseI TTAA 1 cut(s) 945
MslI CAYNNNNRTG 2 cut(s) 477, 852
MspI CCGG 4 cut(s) 155, 419, 434, 674
MspR9I CCNGG 4 cut(s) 259, 272, 783, 1041
MvaI CCWGG 4 cut(s) 259, 272, 783, 1041
MvnI CGCG 2 cut(s) 239, 344
NaeI GCCGGC 1 cut(s) 420
NdeI CATATG 1 cut(s) 1104
NdeII GATC 3 cut(s) 553, 763, 888
NgoMIV GCCGGC 1 cut(s) 418
NlaIII CATG 1 cut(s) 1066
NlaIV GGNNCC 2 cut(s) 264, 441
NmuCI GTSAC 3 cut(s) 157, 920, 1118
NsiI ATGCAT 2 cut(s) 874, 1064
OliI CACNNNNGTG 1 cut(s) 477
PasI CCCWGGG 2 cut(s) 258, 1040
PdiI GCCGGC 1 cut(s) 420
PfeI GAWTC 3 cut(s) 346, 836, 1141
Pfl23II CGTACG 2 cut(s) 462, 824
PinAI ACCGGT 1 cut(s) 673
Ppu21I YACGTR 3 cut(s) 466, 824, 986
Psp6I CCWGG 4 cut(s) 257, 270, 781, 1039
PspEI GGTNACC 1 cut(s) 920
PspGI CCWGG 4 cut(s) 257, 270, 781, 1039
PspLI CGTACG 2 cut(s) 462, 824
PspN4I GGNNCC 2 cut(s) 264, 441
PspPI GGNCC 1 cut(s) 439
PstNI CAGNNNCTG 2 cut(s) 955, 1122
RsaI GTAC 4 cut(s) 326, 464, 640, 826
RsaNI GTAC 4 cut(s) 325, 463, 639, 825
RseI CAYNNNNRTG 2 cut(s) 477, 852
SalI GTCGAC 1 cut(s) 1098
SaqAI TTAA 1 cut(s) 945
Sau3AI GATC 3 cut(s) 553, 763, 888
Sau96I GGNCC 1 cut(s) 439
ScrFI CCNGG 4 cut(s) 259, 272, 783, 1041
SduI GDGCHC 2 cut(s) 265, 474
SfaNI GCATC 5 cut(s) 414, 571, 744, 859, 881
SgrAI CRCCGGYG 2 cut(s) 154, 673
SmiMI CAYNNNNRTG 2 cut(s) 477, 852
SmlI CTYRAG 1 cut(s) 894
SmoI CTYRAG 1 cut(s) 894
Sse9I AATT 7 cut(s) 217, 328, 379, 710, 942, 999, 1133
SspMI CTAG 2 cut(s) 408, 905
StyD4I CCNGG 4 cut(s) 257, 270, 781, 1039
StyI CCWWGG 1 cut(s) 621
TaaI ACNGT 3 cut(s) 320, 957, 1124
TaiI ACGT 7 cut(s) 34, 468, 504, 510, 524, 826, 988
TaqI TCGA 4 cut(s) 579, 738, 843, 1099
TaqII GACCGA 1 cut(s) 1082
TasI AATT 7 cut(s) 217, 328, 379, 710, 942, 999, 1133
TatI WGTACW 2 cut(s) 324, 638
TfiI GAWTC 3 cut(s) 346, 836, 1141
Tru1I TTAA 1 cut(s) 945
Tru9I TTAA 1 cut(s) 945
TscAI CASTG 3 cut(s) 1020, 1087, 1123
TseFI GTSAC 3 cut(s) 157, 920, 1118
TseI GCWGC 1 cut(s) 18
Tsp45I GTSAC 3 cut(s) 157, 920, 1118
TspDTI ATGAA 3 cut(s) 981, 993, 1217
TspRI CASTG 3 cut(s) 1020, 1087, 1123
XapI RAATTY 1 cut(s) 710
XcmI CCANNNNNNNNNTGG 1 cut(s) 392
XmiI GTMKAC 1 cut(s) 1099
XspI CTAG 2 cut(s) 408, 905
ZraI GACGTC 1 cut(s) 502
Zsp2I ATGCAT 2 cut(s) 874, 1064
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.