FvH4_4g14510

E3 ubiquitin-protein ligase LUL4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0013528
Physical Location & Seq
Forward (+)
18171423 .. 18175113
3691 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g14510.t1

Sequence Viewer

Length: 1221 bp
ATGGGGATTTCCTTCAGCAGCAACCGGAGACGAAACAACAACAACAACAACCCCTATTACCAAAACCCACCACCTCCTCCTCCTCCTCCGCCTCAGCCCCACTACCTCTCCAACCCTCACTACTACTCCGACCCTCCTTCTTTCTCTCCGCCGCCTCCGCCGCCGGAGCCTTCTTTCTCTTCCTCCTCCGCCTCGTCTTCCTCTTCCGTCAACTACCCAGAACCCAATTCCGCAATAATCCCCTACGCCGCTCCCAGGGCTGCTGCTTACCAGGCCTACCCTCTCCCTCTTCCGCCGCCTCCGCCGCCGCCGCAGACCCATTACTGCTATGGACAGTATAATTCTTGCAACCAGATGATGGGGAGGTATAGTTACAACCAGAATTACCAGCCTTACTATGGTAATCAGGTTCAGGTTGGTGGGTGGCCGGCGATGCGGCCGCCGGTGGCTCCGGTGCAGCCTCCGCCGCCGTACGTGGAGCACCAGAATGCTAAGAAGGTGAAGAATGATGTCAACGTGCATAAGGACACGTTGAGGGTGGAGATTGATGAGCAGAACCCTGATCAGCATTTGGTTTCTTTCGTTTTCGATGCCTTGTATGATGGCAGCATTACTATTCTCTACTTTGCCAAGGAAGAGACAGATTGTAGATTTGTTCCACTATTTCCTGAAGCATTTACACCAGTGGTAGTCCCCTTTCAGAAAGGAGTAGGCCAGAAATTTCGTCAGCCCTCAGGTTCCGGCATCGATTTAGGCTTCTTCGAGTTGGATGATCTTTCAAAACCTTCACCTGCAGAAGATGTATTCCCACTTGTAATATCTGCTGAAACATGTTCACCACCTGATTCGGTCGATCATATTGGTGAGCCTGTCCTAGATGCATCTCCTCGTATGCAGATTACTCAAGCTGTGCTAGAAAAGAATAATGATGACGCTTTCCAAGTGAAAGTTATTAAGCAGATATTATGGATTGATGAAGTTCGCTATGAGCTACGTGAGATATATGGAATTGCAACCTCAGCAGTGGGCTTTGATGACAATGACCCCGGGAAGGAGTGTGTAATATGCATGACCGAACCGAAGGACACTGCTGTGTTACCTTGTCGACATATGTGTATGTGCAGTGACTGTGCAAAAGAATTGAGGATTCAATCCAATAAATGCCCCATTTGCCGTCAACCCATTGAAGAACTTATAGAGATAAAGATGAATAAAAGCTAG

Protein Analysis

407

Amino Acids

45.4

Weight (kDa)

5.1

Isoelectric Point (pI)

68.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNF157-like_N PF26192 171 - 331 7.9e-71 RNF157-like N-terminal domain
zf-C3HC4_3 PF13920 351 - 397 8.8e-18 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 352 - 392 1.6e-07 Ring finger domain
Prok-RING_4 PF14447 353 - 396 2.7e-06 Prokaryotic RING finger family 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06140
fragaria_vesca FvH4_4g14510
malus_domestica MD13G1183800.v1.1 MD16G1184200.v1.1
prunus_persica Prupe.1G151600_v2.0.a1 Prupe.1G151600_v2.0.a1
pyrus_communis pycom13g15860 pycom16g15470
rosa_chinensis RchiOBHm_Chr4g0418321
rosa_laevigata RLG00000007877
rosa_multiflora Rmu_ssc0000153.1_g000004
rosa_roxburghii Rroxscaffold_5G00361510
rosa_rugosa Rorug04G0152200
rosa_samantha Rh4AG213700 Rh4BG216700 Rh4CG225300 Rh4DG212200
rosa_wichuraiana Rw4G018150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 799
Acc36I ACCTGC 1 cut(s) 799
AccB7I CCANNNNNTGG 1 cut(s) 358
AccBSI CCGCTC 1 cut(s) 251
AccI GTMKAC 1 cut(s) 1105
AcoI YGGCCR 2 cut(s) 425, 437
AcsI RAATTY 1 cut(s) 719
AcuI CTGAAG 1 cut(s) 690
AfaI GTAC 1 cut(s) 473
AfiI CCNNNNNNNGG 4 cut(s) 255, 358, 398, 1051
AflIII ACRYGT 2 cut(s) 528, 830
AgsI TTSAA 3 cut(s) 780, 1151, 1187
AjnI CCWGG 2 cut(s) 254, 270
AleI CACNNNNGTG 1 cut(s) 1091
AluBI AGCT 3 cut(s) 908, 991, 1218
AluI AGCT 3 cut(s) 908, 991, 1218
Alw21I GWGCWC 1 cut(s) 483
Alw26I GTCTC 2 cut(s) 22, 632
AlwNI CAGNNNCTG 1 cut(s) 1128
Ama87I CYCGRG 1 cut(s) 1046
AoxI GGCC 4 cut(s) 273, 425, 437, 712
ApeKI GCWGC 5 cut(s) 18, 260, 263, 457, 606
ApoI RAATTY 1 cut(s) 719
AsuC2I CCSGG 2 cut(s) 1047, 1048
AsuHPI GGTGA 4 cut(s) 511, 780, 828, 875
AvaI CYCGRG 1 cut(s) 1046
AxyI CCTNAGG 1 cut(s) 733
BbsI GAAGAC 1 cut(s) 189
Bbv12I GWGCWC 1 cut(s) 483
BbvCI CCTCAGC 2 cut(s) 93, 1018
BbvI GCAGC 5 cut(s) 30, 247, 250, 469, 618
BccI CCATC 2 cut(s) 352, 596
BceAI ACGGC 2 cut(s) 454, 1158
BciT130I CCWGG 2 cut(s) 256, 272
BclI TGATCA 1 cut(s) 562
BcnI CCSGG 2 cut(s) 1047, 1048
BcoDI GTCTC 2 cut(s) 22, 632
BfaI CTAG 3 cut(s) 875, 914, 1219
BfmI CTRYAG 1 cut(s) 792
BfuAI ACCTGC 1 cut(s) 799
Bme1390I CCNGG 4 cut(s) 256, 272, 1047, 1048
BmeT110I CYCGRG 1 cut(s) 1046
BmiI GGNNCC 3 cut(s) 168, 450, 739
BmrFI CCNGG 4 cut(s) 256, 272, 1047, 1048
BmsI GCATC 5 cut(s) 423, 580, 753, 868, 890
BpiI GAAGAC 1 cut(s) 189
Bpu10I CCTNAGC 2 cut(s) 93, 1018
BpuEI CTTGAG 1 cut(s) 888
BpuMI CCSGG 2 cut(s) 1047, 1048
Bsa29I ATCGAT 1 cut(s) 747
BsaAI YACGTR 2 cut(s) 475, 995
BsaJI CCNNGG 5 cut(s) 254, 255, 630, 1045, 1046
BsaWI WCCGGW 2 cut(s) 24, 451
BsaXI ACNNNNNCTCC 6 cut(s) 92, 110, 122, 140, 355, 385
Bsc4I CCNNNNNNNGG 4 cut(s) 255, 358, 398, 1051
Bse118I RCCGGY 2 cut(s) 427, 442
Bse1I ACTGG 1 cut(s) 683
Bse21I CCTNAGG 1 cut(s) 733
BseBI CCWGG 2 cut(s) 256, 272
BseCI ATCGAT 1 cut(s) 747
BseDI CCNNGG 5 cut(s) 254, 255, 630, 1045, 1046
BseGI GGATG 1 cut(s) 775
BseLI CCNNNNNNNGG 4 cut(s) 255, 358, 398, 1051
BseMII CTCAG 3 cut(s) 107, 747, 1032
BseNI ACTGG 1 cut(s) 683
BseRI GAGGAG 6 cut(s) 66, 69, 72, 75, 175, 876
BseX3I CGGCCG 1 cut(s) 437
BseXI GCAGC 5 cut(s) 30, 247, 250, 469, 618
BsgI GTGCAG 2 cut(s) 476, 1141
Bsh1285I CGRYCG 2 cut(s) 440, 852
BshFI GGCC 4 cut(s) 275, 427, 439, 714
BshVI ATCGAT 1 cut(s) 747
BsiEI CGRYCG 2 cut(s) 440, 852
BsiHKAI GWGCWC 1 cut(s) 483
BsiHKCI CYCGRG 1 cut(s) 1046
BsiSI CCGG 7 cut(s) 25, 164, 428, 443, 452, 741, 1047
BsiWI CGTACG 1 cut(s) 471
BslFI GGGAC 1 cut(s) 677
BslI CCNNNNNNNGG 4 cut(s) 255, 358, 398, 1051
BsmAI GTCTC 2 cut(s) 22, 632
BsmBI CGTCTC 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 677
BsmI GAATGC 1 cut(s) 493
BsnI GGCC 4 cut(s) 275, 427, 439, 714
BsoBI CYCGRG 1 cut(s) 1046
Bsp1286I GDGCHC 1 cut(s) 483
Bsp143I GATC 3 cut(s) 562, 772, 853
BspANI GGCC 4 cut(s) 275, 427, 439, 714
BspCNI CTCAG 3 cut(s) 106, 746, 1031
BspDI ATCGAT 1 cut(s) 747
BspLI GGNNCC 3 cut(s) 168, 450, 739
BspMAI CTGCAG 1 cut(s) 796
BspMI ACCTGC 1 cut(s) 799
BsrBI CCGCTC 1 cut(s) 251
BsrFI RCCGGY 2 cut(s) 427, 442
BsrI ACTGG 1 cut(s) 683
BssAI RCCGGY 2 cut(s) 427, 442
BssECI CCNNGG 5 cut(s) 254, 255, 630, 1045, 1046
BssMI GATC 3 cut(s) 562, 772, 853
BssT1I CCWWGG 1 cut(s) 630
Bst2UI CCWGG 2 cut(s) 256, 272
Bst4CI ACNGT 2 cut(s) 336, 1130
Bst6I CTCTTC 4 cut(s) 184, 208, 294, 630
BstBAI YACGTR 2 cut(s) 475, 995
BstC8I GCNNGC 1 cut(s) 429
BstDEI CTNAG 4 cut(s) 93, 492, 733, 1018
BstF5I GGATG 1 cut(s) 775
BstKTI GATC 3 cut(s) 565, 775, 856
BstMAI GTCTC 2 cut(s) 22, 632
BstMBI GATC 3 cut(s) 562, 772, 853
BstMCI CGRYCG 2 cut(s) 440, 852
BstNI CCWGG 2 cut(s) 256, 272
BstNSI RCATGY 1 cut(s) 834
BstSCI CCNGG 4 cut(s) 254, 270, 1045, 1046
BstSFI CTRYAG 1 cut(s) 792
BstV1I GCAGC 5 cut(s) 30, 247, 250, 469, 618
BstV2I GAAGAC 1 cut(s) 189
BstZI CGGCCG 1 cut(s) 437
Bsu15I ATCGAT 1 cut(s) 747
Bsu36I CCTNAGG 1 cut(s) 733
BsuRI GGCC 4 cut(s) 275, 427, 439, 714
BsuTUI ATCGAT 1 cut(s) 747
BtgZI GCGATG 1 cut(s) 446
BtsCI GGATG 1 cut(s) 775
BtsI GCAGTG 3 cut(s) 1029, 1086, 1129
BtsIMutI CAGTG 4 cut(s) 690, 1029, 1086, 1129
BveI ACCTGC 1 cut(s) 799
Cac8I GCNNGC 1 cut(s) 429
CaiI CAGNNNCTG 1 cut(s) 1128
CciNI GCGGCCGC 1 cut(s) 437
Cfr10I RCCGGY 2 cut(s) 427, 442
Cfr9I CCCGGG 1 cut(s) 1046
ClaI ATCGAT 1 cut(s) 747
CseI GACGC 1 cut(s) 941
Csp6I GTAC 1 cut(s) 472
CviAII CATG 2 cut(s) 831, 1069
CviQI GTAC 1 cut(s) 472
DdeI CTNAG 4 cut(s) 93, 492, 733, 1018
DpnI GATC 3 cut(s) 564, 774, 855
DpnII GATC 3 cut(s) 562, 772, 853
EaeI YGGCCR 2 cut(s) 425, 437
EagI CGGCCG 1 cut(s) 437
Eam1104I CTCTTC 4 cut(s) 184, 208, 294, 630
EarI CTCTTC 4 cut(s) 184, 208, 294, 630
EciI GGCGGA 7 cut(s) 78, 138, 147, 178, 282, 291, 453
EclXI CGGCCG 1 cut(s) 437
Eco130I CCWWGG 1 cut(s) 630
Eco147I AGGCCT 1 cut(s) 275
Eco52I CGGCCG 1 cut(s) 437
Eco57I CTGAAG 1 cut(s) 690
Eco81I CCTNAGG 1 cut(s) 733
Eco88I CYCGRG 1 cut(s) 1046
EcoRII CCWGG 2 cut(s) 254, 270
EcoT14I CCWWGG 1 cut(s) 630
EcoT22I ATGCAT 2 cut(s) 883, 1070
ErhI CCWWGG 1 cut(s) 630
Esp3I CGTCTC 1 cut(s) 22
FaeI CATG 2 cut(s) 834, 1072
FaqI GGGAC 1 cut(s) 677
FatI CATG 2 cut(s) 830, 1068
FauNDI CATATG 1 cut(s) 1110
FbaI TGATCA 1 cut(s) 562
FblI GTMKAC 1 cut(s) 1105
FokI GGATG 1 cut(s) 782
FspBI CTAG 3 cut(s) 875, 914, 1219
HaeIII GGCC 4 cut(s) 275, 427, 439, 714
HapII CCGG 7 cut(s) 25, 164, 428, 443, 452, 741, 1047
HgaI GACGC 1 cut(s) 941
Hin1II CATG 2 cut(s) 834, 1072
HincII GTYRAC 4 cut(s) 211, 514, 1106, 1178
HindII GTYRAC 4 cut(s) 211, 514, 1106, 1178
HinfI GANTC 2 cut(s) 845, 1147
HpaII CCGG 7 cut(s) 25, 164, 428, 443, 452, 741, 1047
HphI GGTGA 4 cut(s) 511, 780, 828, 875
Hpy166II GTNNAC 5 cut(s) 211, 514, 836, 1106, 1178
Hpy188I TCNGA 2 cut(s) 130, 702
Hpy188III TCNNGA 1 cut(s) 668
Hpy8I GTNNAC 5 cut(s) 211, 514, 836, 1106, 1178
HpyAV CCTTC 7 cut(s) 22, 147, 180, 490, 795, 1045, 1075
HpyCH4III ACNGT 2 cut(s) 336, 1130
HpyCH4IV ACGT 4 cut(s) 474, 516, 530, 994
HpyF3I CTNAG 4 cut(s) 93, 492, 733, 1018
HpySE526I ACGT 4 cut(s) 474, 516, 530, 994
Hsp92II CATG 2 cut(s) 834, 1072
KroI GCCGGC 1 cut(s) 427
KroNI GCCGGC 1 cut(s) 429
Ksp22I TGATCA 1 cut(s) 562
Kzo9I GATC 3 cut(s) 562, 772, 853
LmnI GCTCC 4 cut(s) 166, 256, 454, 478
Lsp1109I GCAGC 5 cut(s) 30, 247, 250, 469, 618
LweI GCATC 5 cut(s) 423, 580, 753, 868, 890
MaeI CTAG 3 cut(s) 875, 914, 1219
MaeII ACGT 4 cut(s) 474, 516, 530, 994
MaeIII GTNAC 3 cut(s) 371, 1095, 1124
MalI GATC 3 cut(s) 564, 774, 855
MbiI CCGCTC 1 cut(s) 251
MboI GATC 3 cut(s) 562, 772, 853
MboII GAAGA 9 cut(s) 171, 189, 195, 281, 514, 647, 751, 809, 1199
MhlI GDGCHC 1 cut(s) 483
MluCI AATT 6 cut(s) 226, 340, 382, 719, 1008, 1139
MmeI TCCRAC 3 cut(s) 135, 153, 747
Mph1103I ATGCAT 2 cut(s) 883, 1070
MroNI GCCGGC 1 cut(s) 427
MseI TTAA 1 cut(s) 954
MslI CAYNNNNRTG 3 cut(s) 486, 861, 1091
MspI CCGG 7 cut(s) 25, 164, 428, 443, 452, 741, 1047
MspR9I CCNGG 4 cut(s) 256, 272, 1047, 1048
Mva1269I GAATGC 1 cut(s) 493
MvaI CCWGG 2 cut(s) 256, 272
NaeI GCCGGC 1 cut(s) 429
NciI CCSGG 2 cut(s) 1047, 1048
NdeI CATATG 1 cut(s) 1110
NdeII GATC 3 cut(s) 562, 772, 853
NgoMIV GCCGGC 1 cut(s) 427
NlaIII CATG 2 cut(s) 834, 1072
NlaIV GGNNCC 3 cut(s) 168, 450, 739
NmuCI GTSAC 1 cut(s) 1124
NotI GCGGCCGC 1 cut(s) 437
NsiI ATGCAT 2 cut(s) 883, 1070
NspI RCATGY 1 cut(s) 834
OliI CACNNNNGTG 1 cut(s) 1091
PaqCI CACCTGC 1 cut(s) 799
PasI CCCWGGG 1 cut(s) 255
PceI AGGCCT 1 cut(s) 275
PciI ACATGT 1 cut(s) 830
PctI GAATGC 1 cut(s) 493
PdiI GCCGGC 1 cut(s) 429
PfeI GAWTC 2 cut(s) 845, 1147
Pfl23II CGTACG 1 cut(s) 471
PflMI CCANNNNNTGG 1 cut(s) 358
Ppu21I YACGTR 2 cut(s) 475, 995
PscI ACATGT 1 cut(s) 830
Psp6I CCWGG 2 cut(s) 254, 270
PspGI CCWGG 2 cut(s) 254, 270
PspLI CGTACG 1 cut(s) 471
PspN4I GGNNCC 3 cut(s) 168, 450, 739
PstI CTGCAG 1 cut(s) 796
PstNI CAGNNNCTG 1 cut(s) 1128
RsaI GTAC 1 cut(s) 473
RsaNI GTAC 1 cut(s) 472
RseI CAYNNNNRTG 3 cut(s) 486, 861, 1091
SalI GTCGAC 1 cut(s) 1104
SaqAI TTAA 1 cut(s) 954
Sau3AI GATC 3 cut(s) 562, 772, 853
ScrFI CCNGG 4 cut(s) 256, 272, 1047, 1048
SduI GDGCHC 1 cut(s) 483
SfaNI GCATC 5 cut(s) 423, 580, 753, 868, 890
SfcI CTRYAG 1 cut(s) 792
SgrAI CRCCGGYG 1 cut(s) 442
SmaI CCCGGG 1 cut(s) 1048
SmiMI CAYNNNNRTG 3 cut(s) 486, 861, 1091
SmlI CTYRAG 1 cut(s) 903
SmoI CTYRAG 1 cut(s) 903
Sse9I AATT 6 cut(s) 226, 340, 382, 719, 1008, 1139
SseBI AGGCCT 1 cut(s) 275
SspMI CTAG 3 cut(s) 875, 914, 1219
StuI AGGCCT 1 cut(s) 275
StyD4I CCNGG 4 cut(s) 254, 270, 1045, 1046
StyI CCWWGG 1 cut(s) 630
TaaI ACNGT 2 cut(s) 336, 1130
TaiI ACGT 4 cut(s) 477, 519, 533, 997
TaqI TCGA 5 cut(s) 588, 747, 762, 852, 1105
TaqII GACCGA 2 cut(s) 838, 1088
TasI AATT 6 cut(s) 226, 340, 382, 719, 1008, 1139
TfiI GAWTC 2 cut(s) 845, 1147
Tru1I TTAA 1 cut(s) 954
Tru9I TTAA 1 cut(s) 954
TscAI CASTG 4 cut(s) 690, 1029, 1093, 1129
TseFI GTSAC 1 cut(s) 1124
TseI GCWGC 5 cut(s) 18, 260, 263, 457, 606
Tsp45I GTSAC 1 cut(s) 1124
TspDTI ATGAA 1 cut(s) 990
TspGWI ACGGA 1 cut(s) 196
TspMI CCCGGG 1 cut(s) 1046
TspRI CASTG 4 cut(s) 690, 1029, 1093, 1129
Van91I CCANNNNNTGG 1 cut(s) 358
XapI RAATTY 1 cut(s) 719
XceI RCATGY 1 cut(s) 834
XcmI CCANNNNNNNNNTGG 2 cut(s) 326, 395
XmaI CCCGGG 1 cut(s) 1046
XmiI GTMKAC 1 cut(s) 1105
XspI CTAG 3 cut(s) 875, 914, 1219
Zsp2I ATGCAT 2 cut(s) 883, 1070
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.