Rh4CG225300

E3 ubiquitin-protein ligase LUL4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0013528
Physical Location & Seq
Reverse (-)
46179294 .. 46183302
4009 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG225300.1

Sequence Viewer

Length: 1227 bp
ATGGGGATTTCTTTCAGCAGCAACCGAAGACGTAACAACTACTACCAACACCCACCGCCGCCTCAGCCCCTCTACCTCTCCAATCCTCACTACTACCCCTCCGACCCACCCTCTTTCTCTCCCCCTCCGCCGCCGCCACCTCCTCCGCCGCCGGTGACTTCTTTCTCTTCCTCCTCCTCCTCCTCTTCTTCTTCCGCCACCTACCCAGAACCCAATTCCGCCACCCCTTACGCAGCGCCGCCGCCGCCGCCGCCGCCCAGGGCTCCATACCAGGGCTACCCTCTTCCGCCGCCGCCGCCGCCGCCGCAGTCGCATTACTGCTACGGTCAGTACAATTCTTGCAACCACGCGAATCCGATGATGGGTCGGTTCAGTTACAACCACAATTACCAGCCTTACTATGGTAATCAGGCTAGCGGGTGGCCGGCGATGCGGCCTCCGGTGGCCCCCCTTTATCCTCCGCCGCCGTACGTGGAGCACCAGAGTGCCAAGAAGGTGAAGAATGACGTCAACGTGCGTAAGGACACGTTGAGGCTGGAGATTGATGAGCAGAACCCTGATCAGCATTTGGTCTCGTTCGTTTTCGATGCCTTGTATGATGGGAGCATTACTATTCTCTACTTTGCCAAGGAAGAGGCAGATTGTACATTTGTTCCACTATTTCCTGAAGCATTTACACCGGTGCAAGTCCCTTTTCAGAAAGGAGTAGGCCAGAAATTTTGTCAGCCCTCAGGAACAGGCATCGATTTAGGCTTCTTCGAGTTGGATGATCTGTCAAAACCCTCACCTGGAGAAGATGTATTCCCACTTGTAATATCTGCGGAAACACGTACGCCGCCTGATTCAATCGACCATATTGGTGAGCCTGTCCAAGATGCATCTCCTCGTATGCAGATCACTCAAGCTGTGCTAGAAAAAAATAATGGTGACCCTTTCCAAGTGAAAGTAATTAAGCAGATACTGTGGATTGATGAAGTTCGCTATGAACTACGTGAGATATATGGAATTGCAACCTCAGCAGTGGAAGGCTTTGATGACAATGACCCTGGGAAGGAGTGTGTAATATGCATGACCGAACCGAAGGACACTGCTGTATTACCTTGTCGACATATGTGTATGTGCAGTGACTGTGCAAAAGAATTGAGGATTCAATCCAATAAATGCCCCATTTGCCGACAACCCATTGAAGAACTTATAGAGATAAAGATGAATAAAAGCCAGCAATGA

Protein Analysis

408

Amino Acids

45.52

Weight (kDa)

5.24

Isoelectric Point (pI)

72.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNF157-like_N PF26192 170 - 330 1.6e-70 RNF157-like N-terminal domain
zf-C3HC4_3 PF13920 351 - 397 8.8e-18 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 352 - 392 1.6e-07 Ring finger domain
Prok-RING_4 PF14447 353 - 396 2.7e-06 Prokaryotic RING finger family 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06140
fragaria_vesca FvH4_4g14510
malus_domestica MD13G1183800.v1.1 MD16G1184200.v1.1
prunus_persica Prupe.1G151600_v2.0.a1 Prupe.1G151600_v2.0.a1
pyrus_communis pycom13g15860 pycom16g15470
rosa_chinensis RchiOBHm_Chr4g0418321
rosa_laevigata RLG00000007877
rosa_multiflora Rmu_ssc0000153.1_g000004
rosa_roxburghii Rroxscaffold_5G00361510
rosa_rugosa Rorug04G0152200
rosa_samantha Rh4AG213700 Rh4BG216700 Rh4CG225300 Rh4DG212200
rosa_wichuraiana Rw4G018150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 510
AccI GTMKAC 1 cut(s) 1105
AccII CGCG 1 cut(s) 350
AcoI YGGCCR 1 cut(s) 422
AcsI RAATTY 1 cut(s) 716
AcuI CTGAAG 1 cut(s) 687
AcyI GRCGYC 1 cut(s) 507
AfaI GTAC 4 cut(s) 332, 470, 646, 832
AfiI CCNNNNNNNGG 5 cut(s) 272, 362, 401, 788, 1051
AflIII ACRYGT 2 cut(s) 525, 827
AgeI ACCGGT 1 cut(s) 679
AgsI TTSAA 3 cut(s) 846, 1151, 1187
AjnI CCWGG 4 cut(s) 257, 270, 787, 1045
AleI CACNNNNGTG 1 cut(s) 483
AluBI AGCT 1 cut(s) 905
AluI AGCT 1 cut(s) 905
Alw21I GWGCWC 1 cut(s) 480
Alw26I GTCTC 1 cut(s) 577
AlwNI CAGNNNCTG 2 cut(s) 961, 1128
AoxI GGCC 4 cut(s) 422, 434, 444, 709
ApeKI GCWGC 2 cut(s) 18, 233
ApoI RAATTY 1 cut(s) 716
AsiGI ACCGGT 1 cut(s) 679
AspLEI GCGC 1 cut(s) 238
AspS9I GGNCC 1 cut(s) 445
AsuHPI GGTGA 5 cut(s) 166, 508, 777, 872, 938
AsuNHI GCTAGC 1 cut(s) 413
AxyI CCTNAGG 1 cut(s) 730
BanII GRGCYC 1 cut(s) 265
BbsI GAAGAC 1 cut(s) 34
Bbv12I GWGCWC 1 cut(s) 480
BbvCI CCTCAGC 2 cut(s) 63, 1015
BbvI GCAGC 2 cut(s) 30, 245
BccI CCATC 2 cut(s) 355, 593
BceAI ACGGC 1 cut(s) 451
BciT130I CCWGG 4 cut(s) 259, 272, 789, 1047
BclI TGATCA 1 cut(s) 559
BcoDI GTCTC 1 cut(s) 577
BfaI CTAG 2 cut(s) 414, 911
BfoI RGCGCY 1 cut(s) 239
Bme1390I CCNGG 4 cut(s) 259, 272, 789, 1047
BmgT120I GGNCC 1 cut(s) 445
BmiI GGNNCC 2 cut(s) 264, 447
BmrFI CCNGG 4 cut(s) 259, 272, 789, 1047
BmsI GCATC 5 cut(s) 420, 577, 750, 865, 887
BmtI GCTAGC 1 cut(s) 417
BpiI GAAGAC 1 cut(s) 34
BpmI CTGGAG 2 cut(s) 557, 810
Bpu10I CCTNAGC 2 cut(s) 63, 1015
BpuEI CTTGAG 1 cut(s) 885
Bsa29I ATCGAT 1 cut(s) 744
BsaAI YACGTR 3 cut(s) 472, 830, 992
BsaHI GRCGYC 1 cut(s) 507
BsaI GGTCTC 1 cut(s) 577
BsaJI CCNNGG 6 cut(s) 257, 258, 271, 627, 1045, 1046
BsaWI WCCGGW 2 cut(s) 439, 679
BsaXI ACNNNNNCTCC 4 cut(s) 83, 113, 783, 813
Bsc4I CCNNNNNNNGG 5 cut(s) 272, 362, 401, 788, 1051
Bse118I RCCGGY 3 cut(s) 151, 424, 679
Bse21I CCTNAGG 1 cut(s) 730
BseBI CCWGG 4 cut(s) 259, 272, 789, 1047
BseCI ATCGAT 1 cut(s) 744
BseDI CCNNGG 6 cut(s) 257, 258, 271, 627, 1045, 1046
BseGI GGATG 1 cut(s) 772
BseLI CCNNNNNNNGG 5 cut(s) 272, 362, 401, 788, 1051
BseMII CTCAG 3 cut(s) 77, 744, 1029
BseRI GAGGAG 6 cut(s) 132, 163, 166, 169, 172, 873
BseXI GCAGC 2 cut(s) 30, 245
BsgI GTGCAG 1 cut(s) 1141
Bsh1236I CGCG 1 cut(s) 350
BshFI GGCC 4 cut(s) 424, 436, 446, 711
BshTI ACCGGT 1 cut(s) 679
BshVI ATCGAT 1 cut(s) 744
BsiHKAI GWGCWC 1 cut(s) 480
BsiSI CCGG 4 cut(s) 152, 425, 440, 680
BsiWI CGTACG 2 cut(s) 468, 830
BslFI GGGAC 1 cut(s) 674
BslI CCNNNNNNNGG 5 cut(s) 272, 362, 401, 788, 1051
BsmAI GTCTC 1 cut(s) 577
BsmFI GGGAC 1 cut(s) 674
BsnI GGCC 4 cut(s) 424, 436, 446, 711
Bso31I GGTCTC 1 cut(s) 577
Bsp1286I GDGCHC 2 cut(s) 265, 480
Bsp1407I TGTACA 1 cut(s) 644
Bsp143I GATC 3 cut(s) 559, 769, 894
BspANI GGCC 4 cut(s) 424, 436, 446, 711
BspCNI CTCAG 3 cut(s) 76, 743, 1028
BspDI ATCGAT 1 cut(s) 744
BspFNI CGCG 1 cut(s) 350
BspLI GGNNCC 2 cut(s) 264, 447
BspOI GCTAGC 1 cut(s) 417
BspTNI GGTCTC 1 cut(s) 577
BsrFI RCCGGY 3 cut(s) 151, 424, 679
BsrGI TGTACA 1 cut(s) 644
BssAI RCCGGY 3 cut(s) 151, 424, 679
BssECI CCNNGG 6 cut(s) 257, 258, 271, 627, 1045, 1046
BssMI GATC 3 cut(s) 559, 769, 894
BssNI GRCGYC 1 cut(s) 507
BssT1I CCWWGG 1 cut(s) 627
Bst2UI CCWGG 4 cut(s) 259, 272, 789, 1047
Bst4CI ACNGT 3 cut(s) 326, 963, 1130
Bst6I CTCTTC 4 cut(s) 172, 190, 288, 627
BstACI GRCGYC 1 cut(s) 507
BstAUI TGTACA 1 cut(s) 644
BstBAI YACGTR 3 cut(s) 472, 830, 992
BstC8I GCNNGC 3 cut(s) 415, 426, 1220
BstDEI CTNAG 3 cut(s) 63, 730, 1015
BstEII GGTNACC 1 cut(s) 926
BstF5I GGATG 1 cut(s) 772
BstFNI CGCG 1 cut(s) 350
BstH2I RGCGCY 1 cut(s) 239
BstHHI GCGC 1 cut(s) 238
BstKTI GATC 3 cut(s) 562, 772, 897
BstMAI GTCTC 1 cut(s) 577
BstMBI GATC 3 cut(s) 559, 769, 894
BstNI CCWGG 4 cut(s) 259, 272, 789, 1047
BstPI GGTNACC 1 cut(s) 926
BstSCI CCNGG 4 cut(s) 257, 270, 787, 1045
BstUI CGCG 1 cut(s) 350
BstV1I GCAGC 2 cut(s) 30, 245
BstV2I GAAGAC 1 cut(s) 34
Bsu15I ATCGAT 1 cut(s) 744
Bsu36I CCTNAGG 1 cut(s) 730
BsuRI GGCC 4 cut(s) 424, 436, 446, 711
BsuTUI ATCGAT 1 cut(s) 744
BtgZI GCGATG 1 cut(s) 443
BtsCI GGATG 1 cut(s) 772
BtsI GCAGTG 3 cut(s) 1026, 1086, 1129
BtsIMutI CAGTG 3 cut(s) 1026, 1086, 1129
Cac8I GCNNGC 3 cut(s) 415, 426, 1220
CaiI CAGNNNCTG 2 cut(s) 961, 1128
CfoI GCGC 1 cut(s) 238
Cfr10I RCCGGY 3 cut(s) 151, 424, 679
Cfr13I GGNCC 1 cut(s) 445
ClaI ATCGAT 1 cut(s) 744
Csp6I GTAC 4 cut(s) 331, 469, 645, 831
CspAI ACCGGT 1 cut(s) 679
CviAII CATG 1 cut(s) 1069
CviQI GTAC 4 cut(s) 331, 469, 645, 831
DdeI CTNAG 3 cut(s) 63, 730, 1015
DpnI GATC 3 cut(s) 561, 771, 896
DpnII GATC 3 cut(s) 559, 769, 894
EaeI YGGCCR 1 cut(s) 422
Eam1104I CTCTTC 4 cut(s) 172, 190, 288, 627
EarI CTCTTC 4 cut(s) 172, 190, 288, 627
EciI GGCGGA 6 cut(s) 117, 135, 184, 208, 276, 450
Eco130I CCWWGG 1 cut(s) 627
Eco24I GRGCYC 1 cut(s) 265
Eco31I GGTCTC 1 cut(s) 577
Eco57I CTGAAG 1 cut(s) 687
Eco81I CCTNAGG 1 cut(s) 730
Eco91I GGTNACC 1 cut(s) 926
EcoO65I GGTNACC 1 cut(s) 926
EcoRII CCWGG 4 cut(s) 257, 270, 787, 1045
EcoT14I CCWWGG 1 cut(s) 627
EcoT22I ATGCAT 2 cut(s) 880, 1070
EcoT38I GRGCYC 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 627
FaeI CATG 1 cut(s) 1072
FaqI GGGAC 1 cut(s) 674
FatI CATG 1 cut(s) 1068
FauI CCCGC 1 cut(s) 410
FauNDI CATATG 1 cut(s) 1110
FbaI TGATCA 1 cut(s) 559
FblI GTMKAC 1 cut(s) 1105
FokI GGATG 1 cut(s) 779
FriOI GRGCYC 1 cut(s) 265
FspBI CTAG 2 cut(s) 414, 911
GlaI GCGC 1 cut(s) 237
GsuI CTGGAG 2 cut(s) 557, 810
HaeII RGCGCY 1 cut(s) 239
HaeIII GGCC 4 cut(s) 424, 436, 446, 711
HapII CCGG 4 cut(s) 152, 425, 440, 680
HhaI GCGC 1 cut(s) 238
Hin1I GRCGYC 1 cut(s) 507
Hin1II CATG 1 cut(s) 1072
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HincII GTYRAC 2 cut(s) 511, 1106
HindII GTYRAC 2 cut(s) 511, 1106
HinfI GANTC 3 cut(s) 352, 842, 1147
HpaII CCGG 4 cut(s) 152, 425, 440, 680
HphI GGTGA 5 cut(s) 166, 508, 777, 872, 938
Hpy166II GTNNAC 2 cut(s) 511, 1106
Hpy188I TCNGA 3 cut(s) 103, 357, 699
Hpy188III TCNNGA 2 cut(s) 665, 732
Hpy8I GTNNAC 2 cut(s) 511, 1106
HpyAV CCTTC 4 cut(s) 487, 1019, 1045, 1075
HpyCH4III ACNGT 3 cut(s) 326, 963, 1130
HpyCH4IV ACGT 7 cut(s) 31, 471, 507, 513, 527, 829, 991
HpyCH4V TGCA 8 cut(s) 342, 685, 878, 892, 1010, 1068, 1122, 1133
HpyF3I CTNAG 3 cut(s) 63, 730, 1015
HpySE526I ACGT 7 cut(s) 31, 471, 507, 513, 527, 829, 991
Hsp92I GRCGYC 1 cut(s) 507
Hsp92II CATG 1 cut(s) 1072
HspAI GCGC 1 cut(s) 236
KroI GCCGGC 1 cut(s) 424
KroNI GCCGGC 1 cut(s) 426
Ksp22I TGATCA 1 cut(s) 559
Kzo9I GATC 3 cut(s) 559, 769, 894
LmnI GCTCC 3 cut(s) 268, 475, 603
Lsp1109I GCAGC 2 cut(s) 30, 245
LweI GCATC 5 cut(s) 420, 577, 750, 865, 887
MaeI CTAG 2 cut(s) 414, 911
MaeII ACGT 7 cut(s) 31, 471, 507, 513, 527, 829, 991
MaeIII GTNAC 5 cut(s) 32, 154, 374, 926, 1124
MalI GATC 3 cut(s) 561, 771, 896
MboI GATC 3 cut(s) 559, 769, 894
MhlI GDGCHC 2 cut(s) 265, 480
MluCI AATT 7 cut(s) 214, 334, 385, 716, 948, 1005, 1139
MmeI TCCRAC 2 cut(s) 126, 744
Mph1103I ATGCAT 2 cut(s) 880, 1070
MroNI GCCGGC 1 cut(s) 424
MseI TTAA 1 cut(s) 951
MslI CAYNNNNRTG 2 cut(s) 483, 858
MspI CCGG 4 cut(s) 152, 425, 440, 680
MspR9I CCNGG 4 cut(s) 259, 272, 789, 1047
MvaI CCWGG 4 cut(s) 259, 272, 789, 1047
MvnI CGCG 1 cut(s) 350
NaeI GCCGGC 1 cut(s) 426
NdeI CATATG 1 cut(s) 1110
NdeII GATC 3 cut(s) 559, 769, 894
NgoMIV GCCGGC 1 cut(s) 424
NheI GCTAGC 1 cut(s) 413
NlaIII CATG 1 cut(s) 1072
NlaIV GGNNCC 2 cut(s) 264, 447
NmuCI GTSAC 3 cut(s) 154, 926, 1124
NsiI ATGCAT 2 cut(s) 880, 1070
OliI CACNNNNGTG 1 cut(s) 483
PasI CCCWGGG 2 cut(s) 258, 1046
PdiI GCCGGC 1 cut(s) 426
PfeI GAWTC 3 cut(s) 352, 842, 1147
Pfl23II CGTACG 2 cut(s) 468, 830
PinAI ACCGGT 1 cut(s) 679
Ppu21I YACGTR 3 cut(s) 472, 830, 992
Psp6I CCWGG 4 cut(s) 257, 270, 787, 1045
PspEI GGTNACC 1 cut(s) 926
PspGI CCWGG 4 cut(s) 257, 270, 787, 1045
PspLI CGTACG 2 cut(s) 468, 830
PspN4I GGNNCC 2 cut(s) 264, 447
PspPI GGNCC 1 cut(s) 445
PstNI CAGNNNCTG 2 cut(s) 961, 1128
RsaI GTAC 4 cut(s) 332, 470, 646, 832
RsaNI GTAC 4 cut(s) 331, 469, 645, 831
RseI CAYNNNNRTG 2 cut(s) 483, 858
SalI GTCGAC 1 cut(s) 1104
SaqAI TTAA 1 cut(s) 951
Sau3AI GATC 3 cut(s) 559, 769, 894
Sau96I GGNCC 1 cut(s) 445
ScrFI CCNGG 4 cut(s) 259, 272, 789, 1047
SduI GDGCHC 2 cut(s) 265, 480
SfaNI GCATC 5 cut(s) 420, 577, 750, 865, 887
SgrAI CRCCGGYG 2 cut(s) 151, 679
SmiMI CAYNNNNRTG 2 cut(s) 483, 858
SmlI CTYRAG 1 cut(s) 900
SmoI CTYRAG 1 cut(s) 900
Sse9I AATT 7 cut(s) 214, 334, 385, 716, 948, 1005, 1139
SspMI CTAG 2 cut(s) 414, 911
StyD4I CCNGG 4 cut(s) 257, 270, 787, 1045
StyI CCWWGG 1 cut(s) 627
TaaI ACNGT 3 cut(s) 326, 963, 1130
TaiI ACGT 7 cut(s) 34, 474, 510, 516, 530, 832, 994
TaqI TCGA 5 cut(s) 585, 744, 759, 849, 1105
TaqII GACCGA 1 cut(s) 1088
TasI AATT 7 cut(s) 214, 334, 385, 716, 948, 1005, 1139
TatI WGTACW 2 cut(s) 330, 644
TfiI GAWTC 3 cut(s) 352, 842, 1147
Tru1I TTAA 1 cut(s) 951
Tru9I TTAA 1 cut(s) 951
TscAI CASTG 3 cut(s) 1026, 1093, 1129
TseFI GTSAC 3 cut(s) 154, 926, 1124
TseI GCWGC 2 cut(s) 18, 233
Tsp45I GTSAC 3 cut(s) 154, 926, 1124
TspDTI ATGAA 3 cut(s) 987, 999, 1223
TspRI CASTG 3 cut(s) 1026, 1093, 1129
XapI RAATTY 1 cut(s) 716
XcmI CCANNNNNNNNNTGG 1 cut(s) 398
XmiI GTMKAC 1 cut(s) 1105
XspI CTAG 2 cut(s) 414, 911
ZraI GACGTC 1 cut(s) 508
Zsp2I ATGCAT 2 cut(s) 880, 1070
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.