MD13G1183800.v1.1

E3 ubiquitin-protein ligase LUL4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0013528
Physical Location & Seq
Forward (+)
15481526 .. 15485580
4055 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1183800.v1.1.491

Sequence Viewer

Length: 1263 bp
ATGGGGATTTCAAGTAGCAACAACAGAAGAAGAAACAACTATTACCAAAACCCACCACCGCCTCCGCCGCCACCGCCGCCACGACAGCCCCATTACATCTCAAGTTCTCATCCTTATTACTCATCAGAGCATGCCTCTCTTTCTCCACCGCCACCGCCACTGCCACCTCCACCTCCTCCTCCACTTCCACCTGGTCCTCTGGTTTCTGCCTCTCCTTCTTCCTCTTTTTCTTTTACTTCAAATAATAACTACCCATATGCCAATTCCGCCACGCCTTACACTCCACAAGGACCGCAGCCCAGAGCTCCTTACCCCACCCACCCTCTTCCTTTCCCGCCTCCGCCGCAGCAAACCCATTACAGCTATGGCCAATACAACTCCCGCAACCATGGGAATTCCATGATGGGGCGCTTCAGTTACAATTACAATTACCAGCAGCCTTATAATTATGGTGCCAGTCAGAGTAATGGGTGGCCCGCAGTTCGGCCTCCGCCGCCGCCTTACGTTGAGCATCAGAACGCCAAGAAGGTTAAGAACGATGTCAACGTGCGTAAGGACACGTTGAGGCTTGAGATTGATGAGCTGAACCCTGATCAGCATTTGGTGTCTTTCGTTTTTGACGCCATGTATGATGGGAGCATCACGGTTTTCTACTTTGCCAAGGAAGAGCCAGACTGTAGGTTTGTTCCACTATTTCCTGAAGCATTTATGCCGGTGAGAGTTCCCTTTCAGAAGGGTCTTGGCCAAAAATTTCGTCAGCCCTCAGGAACAGGCATTGCTTTAGGCTTCTTTGAGTTGGATGATCTTTCAAAACCATCACCTGGAGAAGATGTATTTCCCCTTGTAATATCTGCTGAAACATGTTTGCCACCTGATTCAACAGATGAGCATGTTGGTGAGCCTGCCCCAGATGCTTCCCCTCGTATGCAGATTACTCAAGCTGTACTGGAAAAGAACAATGGTGACCATTTCCAAGTGAAAGTAATTAGGCAGATACTGTGGATTGATGAAGTTCGGTATGAGCTACGTGAGATATATGGAATAGGAACCTCGACAGTGGAAAGCTTTGATGACACTGAACCAGGGAAGGAATGCGTGATATGCATGACTGAGCCTAAGGACACTGCTGTGTTACCTTGTCGACATATGTGTATGTGCAGTGACTGTGCAAAAGAATTGCGGATACAATCCAATAAATGCCCTATCTGCCGTCAACCCATTGAGGAACTTATAGAAATCAAGATAAATAAAAGTGATCAATGA

Protein Analysis

421

Amino Acids

47.17

Weight (kDa)

5.79

Isoelectric Point (pI)

67.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNF157-like_N PF26192 181 - 342 1.4e-69 RNF157-like N-terminal domain
zf-C3HC4_3 PF13920 363 - 409 9.2e-18 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 364 - 404 1.7e-07 Ring finger domain
Prok-RING_4 PF14447 365 - 408 2.4e-06 Prokaryotic RING finger family 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06140
fragaria_vesca FvH4_4g14510
malus_domestica MD13G1183800.v1.1 MD16G1184200.v1.1
prunus_persica Prupe.1G151600_v2.0.a1 Prupe.1G151600_v2.0.a1
pyrus_communis pycom13g15860 pycom16g15470
rosa_chinensis RchiOBHm_Chr4g0418321
rosa_laevigata RLG00000007877
rosa_multiflora Rmu_ssc0000153.1_g000004
rosa_roxburghii Rroxscaffold_5G00361510
rosa_rugosa Rorug04G0152200
rosa_samantha Rh4AG213700 Rh4BG216700 Rh4CG225300 Rh4DG212200
rosa_wichuraiana Rw4G018150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 444
AccB1I GGYRCC 1 cut(s) 452
AccB7I CCANNNNNTGG 1 cut(s) 821
AccI GTMKAC 1 cut(s) 1141
AcoI YGGCCR 2 cut(s) 367, 742
AcsI RAATTY 2 cut(s) 394, 749
AcuI CTGAAG 2 cut(s) 397, 720
AcyI GRCGYC 1 cut(s) 621
AfaI GTAC 1 cut(s) 945
AfiI CCNNNNNNNGG 3 cut(s) 405, 483, 821
AflIII ACRYGT 2 cut(s) 558, 860
AgsI TTSAA 4 cut(s) 12, 240, 810, 879
AjnI CCWGG 3 cut(s) 190, 820, 1081
AleI CACNNNNGTG 1 cut(s) 1127
AluBI AGCT 6 cut(s) 305, 363, 583, 941, 1024, 1065
AluI AGCT 6 cut(s) 305, 363, 583, 941, 1024, 1065
Alw21I GWGCWC 1 cut(s) 307
AlwNI CAGNNNCTG 2 cut(s) 997, 1164
AoxI GGCC 4 cut(s) 367, 473, 485, 742
ApeKI GCWGC 3 cut(s) 295, 346, 436
ApoI RAATTY 2 cut(s) 394, 749
ArsI GACNNNNNNTTYG 4 cut(s) 665, 697, 739, 771
AspLEI GCGC 1 cut(s) 411
AspS9I GGNCC 3 cut(s) 194, 290, 474
AsuHPI GGTGA 4 cut(s) 727, 810, 908, 974
AvaII GGWCC 2 cut(s) 194, 290
AxyI CCTNAGG 2 cut(s) 763, 1116
BalI TGGCCA 2 cut(s) 369, 744
BanI GGYRCC 1 cut(s) 452
BanII GRGCYC 1 cut(s) 307
Bbv12I GWGCWC 1 cut(s) 307
BbvI GCAGC 3 cut(s) 307, 358, 448
BccI CCATC 3 cut(s) 397, 626, 823
BceAI ACGGC 1 cut(s) 1194
BciT130I CCWGG 3 cut(s) 192, 822, 1083
BciVI GTATCC 1 cut(s) 1176
BclI TGATCA 2 cut(s) 592, 1255
BfmI CTRYAG 1 cut(s) 676
BfoI RGCGCY 1 cut(s) 412
BfuI GTATCC 1 cut(s) 1176
BisI GCNGC 8 cut(s) 68, 77, 296, 344, 347, 437, 494, 497
BlsI GCNGC 8 cut(s) 69, 78, 297, 345, 348, 438, 495, 498
Bme1390I CCNGG 3 cut(s) 192, 822, 1083
Bme18I GGWCC 2 cut(s) 194, 290
BmgT120I GGNCC 3 cut(s) 194, 290, 474
BmiI GGNNCC 2 cut(s) 454, 1048
BmrFI CCNGG 3 cut(s) 192, 822, 1083
BmsI GCATC 3 cut(s) 520, 648, 901
BplI GAGNNNNNCTC 2 cut(s) 119, 151
BpmI CTGGAG 1 cut(s) 843
BpuEI CTTGAG 3 cut(s) 85, 590, 921
BsaAI YACGTR 1 cut(s) 1028
BsaHI GRCGYC 1 cut(s) 621
BsaJI CCNNGG 3 cut(s) 388, 660, 1082
BsaXI ACNNNNNCTCC 2 cut(s) 816, 846
Bsc4I CCNNNNNNNGG 3 cut(s) 405, 483, 821
Bse118I RCCGGY 1 cut(s) 712
Bse1I ACTGG 2 cut(s) 456, 951
Bse21I CCTNAGG 2 cut(s) 763, 1116
Bse3DI GCAATG 1 cut(s) 774
BseBI CCWGG 3 cut(s) 192, 822, 1083
BseDI CCNNGG 3 cut(s) 388, 660, 1082
BseGI GGATG 2 cut(s) 109, 805
BseLI CCNNNNNNNGG 3 cut(s) 405, 483, 821
BseMI GCAATG 1 cut(s) 774
BseMII CTCAG 2 cut(s) 777, 1101
BseNI ACTGG 2 cut(s) 456, 951
BseRI GAGGAG 2 cut(s) 165, 168
BseXI GCAGC 3 cut(s) 307, 358, 448
BsgI GTGCAG 1 cut(s) 1177
BshFI GGCC 4 cut(s) 369, 475, 487, 744
BshNI GGYRCC 1 cut(s) 452
BsiHKAI GWGCWC 1 cut(s) 307
BsiSI CCGG 1 cut(s) 713
BslI CCNNNNNNNGG 3 cut(s) 405, 483, 821
BsmI GAATGC 1 cut(s) 1097
BsnI GGCC 4 cut(s) 369, 475, 487, 744
Bsp1286I GDGCHC 1 cut(s) 307
Bsp143I GATC 3 cut(s) 592, 802, 1255
Bsp19I CCATGG 1 cut(s) 388
BspANI GGCC 4 cut(s) 369, 475, 487, 744
BspCNI CTCAG 2 cut(s) 776, 1102
BspLI GGNNCC 2 cut(s) 454, 1048
BspQI GCTCTTC 1 cut(s) 660
BspT107I GGYRCC 1 cut(s) 452
BsrDI GCAATG 1 cut(s) 774
BsrFI RCCGGY 1 cut(s) 712
BsrI ACTGG 2 cut(s) 456, 951
BssAI RCCGGY 1 cut(s) 712
BssECI CCNNGG 3 cut(s) 388, 660, 1082
BssMI GATC 3 cut(s) 592, 802, 1255
BssNI GRCGYC 1 cut(s) 621
BssT1I CCWWGG 2 cut(s) 388, 660
Bst2UI CCWGG 3 cut(s) 192, 822, 1083
Bst4CI ACNGT 5 cut(s) 646, 677, 999, 1057, 1166
Bst6I CTCTTC 2 cut(s) 330, 660
BstACI GRCGYC 1 cut(s) 621
BstBAI YACGTR 1 cut(s) 1028
BstC8I GCNNGC 3 cut(s) 132, 477, 903
BstDEI CTNAG 3 cut(s) 763, 1110, 1116
BstDSI CCRYGG 1 cut(s) 388
BstEII GGTNACC 1 cut(s) 962
BstF5I GGATG 2 cut(s) 109, 805
BstH2I RGCGCY 1 cut(s) 412
BstHHI GCGC 1 cut(s) 411
BstKTI GATC 3 cut(s) 595, 805, 1258
BstMBI GATC 3 cut(s) 592, 802, 1255
BstNI CCWGG 3 cut(s) 192, 822, 1083
BstNSI RCATGY 3 cut(s) 134, 864, 893
BstPI GGTNACC 1 cut(s) 962
BstSCI CCNGG 3 cut(s) 190, 820, 1081
BstSFI CTRYAG 1 cut(s) 676
BstV1I GCAGC 3 cut(s) 307, 358, 448
Bsu36I CCTNAGG 2 cut(s) 763, 1116
BsuI GTATCC 1 cut(s) 1176
BsuRI GGCC 4 cut(s) 369, 475, 487, 744
BtgI CCRYGG 1 cut(s) 388
BtsCI GGATG 2 cut(s) 109, 805
BtsI GCAGTG 3 cut(s) 158, 1122, 1165
BtsIMutI CAGTG 5 cut(s) 158, 1062, 1074, 1122, 1165
Cac8I GCNNGC 3 cut(s) 132, 477, 903
CaiI CAGNNNCTG 2 cut(s) 997, 1164
CfoI GCGC 1 cut(s) 411
Cfr10I RCCGGY 1 cut(s) 712
Cfr13I GGNCC 3 cut(s) 194, 290, 474
CseI GACGC 1 cut(s) 629
CsiI ACCWGGT 1 cut(s) 190
Csp6I GTAC 1 cut(s) 944
CviAII CATG 7 cut(s) 131, 389, 400, 625, 861, 890, 1105
CviQI GTAC 1 cut(s) 944
DdeI CTNAG 3 cut(s) 763, 1110, 1116
DpnI GATC 3 cut(s) 594, 804, 1257
DpnII GATC 3 cut(s) 592, 802, 1255
EaeI YGGCCR 2 cut(s) 367, 742
Eam1104I CTCTTC 2 cut(s) 330, 660
EarI CTCTTC 2 cut(s) 330, 660
EciI GGCGGA 4 cut(s) 54, 256, 330, 480
Ecl136II GAGCTC 1 cut(s) 305
Eco130I CCWWGG 2 cut(s) 388, 660
Eco24I GRGCYC 1 cut(s) 307
Eco47I GGWCC 2 cut(s) 194, 290
Eco53kI GAGCTC 1 cut(s) 305
Eco57I CTGAAG 2 cut(s) 397, 720
Eco81I CCTNAGG 2 cut(s) 763, 1116
Eco91I GGTNACC 1 cut(s) 962
EcoICRI GAGCTC 1 cut(s) 305
EcoO65I GGTNACC 1 cut(s) 962
EcoRI GAATTC 1 cut(s) 394
EcoRII CCWGG 3 cut(s) 190, 820, 1081
EcoT14I CCWWGG 2 cut(s) 388, 660
EcoT22I ATGCAT 1 cut(s) 1106
EcoT38I GRGCYC 1 cut(s) 307
ErhI CCWWGG 2 cut(s) 388, 660
FaeI CATG 7 cut(s) 134, 392, 403, 628, 864, 893, 1108
FatI CATG 7 cut(s) 130, 388, 399, 624, 860, 889, 1104
FauI CCCGC 3 cut(s) 342, 389, 484
FauNDI CATATG 2 cut(s) 256, 1146
FbaI TGATCA 2 cut(s) 592, 1255
FblI GTMKAC 1 cut(s) 1141
Fnu4HI GCNGC 8 cut(s) 68, 77, 296, 344, 347, 437, 494, 497
FokI GGATG 2 cut(s) 96, 812
FriOI GRGCYC 1 cut(s) 307
Fsp4HI GCNGC 8 cut(s) 68, 77, 296, 344, 347, 437, 494, 497
GlaI GCGC 1 cut(s) 410
GluI GCNGC 8 cut(s) 68, 77, 296, 344, 347, 437, 494, 497
GsuI CTGGAG 1 cut(s) 843
HaeII RGCGCY 1 cut(s) 412
HaeIII GGCC 4 cut(s) 369, 475, 487, 744
HapII CCGG 1 cut(s) 713
HgaI GACGC 1 cut(s) 629
HhaI GCGC 1 cut(s) 411
Hin1I GRCGYC 1 cut(s) 621
Hin1II CATG 7 cut(s) 134, 392, 403, 628, 864, 893, 1108
Hin6I GCGC 1 cut(s) 409
HinP1I GCGC 1 cut(s) 409
HincII GTYRAC 3 cut(s) 544, 1142, 1214
HindII GTYRAC 3 cut(s) 544, 1142, 1214
HindIII AAGCTT 1 cut(s) 1063
HinfI GANTC 1 cut(s) 875
HpaII CCGG 1 cut(s) 713
HphI GGTGA 4 cut(s) 727, 810, 908, 974
Hpy166II GTNNAC 3 cut(s) 544, 1142, 1214
Hpy188I TCNGA 4 cut(s) 127, 462, 516, 732
Hpy188III TCNNGA 3 cut(s) 698, 765, 1240
Hpy8I GTNNAC 3 cut(s) 544, 1142, 1214
HpyAV CCTTC 4 cut(s) 225, 520, 727, 1081
HpyCH4III ACNGT 5 cut(s) 646, 677, 999, 1057, 1166
HpyCH4IV ACGT 4 cut(s) 504, 546, 560, 1027
HpyCH4V TGCA 4 cut(s) 928, 1104, 1158, 1169
HpyF3I CTNAG 3 cut(s) 763, 1110, 1116
HpySE526I ACGT 4 cut(s) 504, 546, 560, 1027
Hsp92I GRCGYC 1 cut(s) 621
Hsp92II CATG 7 cut(s) 134, 392, 403, 628, 864, 893, 1108
HspAI GCGC 1 cut(s) 409
Ksp22I TGATCA 2 cut(s) 592, 1255
Kzo9I GATC 3 cut(s) 592, 802, 1255
LguI GCTCTTC 1 cut(s) 660
LmnI GCTCC 2 cut(s) 310, 636
Lsp1109I GCAGC 3 cut(s) 307, 358, 448
LweI GCATC 3 cut(s) 520, 648, 901
MabI ACCWGGT 1 cut(s) 190
MaeII ACGT 4 cut(s) 504, 546, 560, 1027
MaeIII GTNAC 4 cut(s) 416, 962, 1131, 1160
MalI GATC 3 cut(s) 594, 804, 1257
MboI GATC 3 cut(s) 592, 802, 1255
MboII GAAGA 6 cut(s) 39, 42, 210, 317, 677, 839
MhlI GDGCHC 1 cut(s) 307
MlsI TGGCCA 2 cut(s) 369, 744
MluCI AATT 8 cut(s) 262, 394, 421, 427, 445, 749, 984, 1175
MluNI TGGCCA 2 cut(s) 369, 744
MmeI TCCRAC 1 cut(s) 777
Mox20I TGGCCA 2 cut(s) 369, 744
Mph1103I ATGCAT 1 cut(s) 1106
MscI TGGCCA 2 cut(s) 369, 744
MseI TTAA 1 cut(s) 531
MslI CAYNNNNRTG 2 cut(s) 894, 1127
Msp20I TGGCCA 2 cut(s) 369, 744
MspI CCGG 1 cut(s) 713
MspR9I CCNGG 3 cut(s) 192, 822, 1083
Mva1269I GAATGC 1 cut(s) 1097
MvaI CCWGG 3 cut(s) 192, 822, 1083
NcoI CCATGG 1 cut(s) 388
NdeI CATATG 2 cut(s) 256, 1146
NdeII GATC 3 cut(s) 592, 802, 1255
NlaIII CATG 7 cut(s) 134, 392, 403, 628, 864, 893, 1108
NlaIV GGNNCC 2 cut(s) 454, 1048
NmuCI GTSAC 2 cut(s) 962, 1160
NsiI ATGCAT 1 cut(s) 1106
NspI RCATGY 3 cut(s) 134, 864, 893
OliI CACNNNNGTG 1 cut(s) 1127
PaeI GCATGC 1 cut(s) 134
PciI ACATGT 1 cut(s) 860
PciSI GCTCTTC 1 cut(s) 660
PcsI WCGNNNNNNNCGW 1 cut(s) 543
PctI GAATGC 1 cut(s) 1097
PfeI GAWTC 1 cut(s) 875
PflMI CCANNNNNTGG 1 cut(s) 821
PkrI GCNGC 8 cut(s) 69, 78, 297, 345, 348, 438, 495, 498
Ppu21I YACGTR 1 cut(s) 1028
PscI ACATGT 1 cut(s) 860
PsiI TTATAA 1 cut(s) 444
Psp124BI GAGCTC 1 cut(s) 307
Psp6I CCWGG 3 cut(s) 190, 820, 1081
PspEI GGTNACC 1 cut(s) 962
PspGI CCWGG 3 cut(s) 190, 820, 1081
PspN4I GGNNCC 2 cut(s) 454, 1048
PspPI GGNCC 3 cut(s) 194, 290, 474
PstNI CAGNNNCTG 2 cut(s) 997, 1164
RsaI GTAC 1 cut(s) 945
RsaNI GTAC 1 cut(s) 944
RseI CAYNNNNRTG 2 cut(s) 894, 1127
SacI GAGCTC 1 cut(s) 307
SalI GTCGAC 1 cut(s) 1140
SapI GCTCTTC 1 cut(s) 660
SaqAI TTAA 1 cut(s) 531
SatI GCNGC 8 cut(s) 68, 77, 296, 344, 347, 437, 494, 497
Sau3AI GATC 3 cut(s) 592, 802, 1255
Sau96I GGNCC 3 cut(s) 194, 290, 474
ScrFI CCNGG 3 cut(s) 192, 822, 1083
SduI GDGCHC 1 cut(s) 307
SexAI ACCWGGT 1 cut(s) 190
SfaNI GCATC 3 cut(s) 520, 648, 901
SfcI CTRYAG 1 cut(s) 676
SinI GGWCC 2 cut(s) 194, 290
SmiMI CAYNNNNRTG 2 cut(s) 894, 1127
SmlI CTYRAG 3 cut(s) 100, 569, 936
SmoI CTYRAG 3 cut(s) 100, 569, 936
SphI GCATGC 1 cut(s) 134
Sse9I AATT 8 cut(s) 262, 394, 421, 427, 445, 749, 984, 1175
SstI GAGCTC 1 cut(s) 307
StyD4I CCNGG 3 cut(s) 190, 820, 1081
StyI CCWWGG 2 cut(s) 388, 660
TaaI ACNGT 5 cut(s) 646, 677, 999, 1057, 1166
TaiI ACGT 4 cut(s) 507, 549, 563, 1030
TaqI TCGA 2 cut(s) 1052, 1141
TasI AATT 8 cut(s) 262, 394, 421, 427, 445, 749, 984, 1175
TatI WGTACW 1 cut(s) 943
TauI GCSGC 5 cut(s) 70, 79, 346, 496, 499
TfiI GAWTC 1 cut(s) 875
Tru1I TTAA 1 cut(s) 531
Tru9I TTAA 1 cut(s) 531
TscAI CASTG 5 cut(s) 165, 1062, 1081, 1129, 1165
TseFI GTSAC 2 cut(s) 962, 1160
TseI GCWGC 3 cut(s) 295, 346, 436
Tsp45I GTSAC 2 cut(s) 962, 1160
TspDTI ATGAA 1 cut(s) 1023
TspRI CASTG 5 cut(s) 165, 1062, 1081, 1129, 1165
Van91I CCANNNNNTGG 1 cut(s) 821
VpaK11BI GGWCC 2 cut(s) 194, 290
XapI RAATTY 2 cut(s) 394, 749
XceI RCATGY 3 cut(s) 134, 864, 893
XcmI CCANNNNNNNNNTGG 1 cut(s) 362
XmiI GTMKAC 1 cut(s) 1141
Zsp2I ATGCAT 1 cut(s) 1106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.