Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013528

Physical Location & Seq

Genomic Coordinates Forward (+)

11957002 .. 11961700

Gene Structure 4699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G151600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGTCAATACCGCCACCCCTTTACGCTCAACAACCCAGAGGTCCTTATCCCGCCTACCCTCTTCCTCTTACACCTCCTCCTCCTCCACCTCAAACCCATTATTGCTATGGCCACTACAGTTCATGCAACCATGCCAATTCCGCCATGGGTCGCTTCAGTTACAATTACAATTACCAGCCTTATTATGCTGCCAATCAGGCTAATGGGTGGCCCGCAATTCGGCCTCCCGTGGGCCCCGTGCTGCCTCCTCCGCCTCACGTTGAGCATCAGAACGCCAAGAAGGTGAAGAACGATGTCAACGTGCATAAGGACACATTGAGGCTTGAGATAGATGAGCTGAACCCTGATCAACATTTGGTTTCTTTCGTTTTCGATGCCATGTATGATGGGAGCATTACAGTGTTCTACTTTGCCAAGGAAGAGCCAGACTGTAGGTTTGTTCCCCTATTCCCTGAAGCATTTGTGCCAGTGAGAGTCCCCTTTCAGAAGGGTTCCGGGCAAAAATTTCGTCAGCCCTCAGGAACAGGCATTGATTTAGGTTTCTTTGAGTTGGATGATCTTTCAAAACCATCACCCGGAGAAGATGTATTTCCGCTTGTAATATCTGCTGAAACATTTCCACCTCATTCAACAGATGAGCATATTGTTGAGCCCACCCCAGATACATCCCCTCGTATGCAGATTACTCAAGCTGTACTAGAAAAGAACAATGGTGACCATTTCCAAGTGAGAGTAATTAGGCAGATACTGTGGATTGATGAAGTTCGTTATGAGCTACGTGAGATATATGGAATAGCAAGCTCGACAGTGGAAGGCTTTGATGACAATGACCCTGGGAAGGAGTGTGTGATATGCATGACTGAACCTAAGGACACTGCTGTGCTACCTTGTCGACATATGTGTATGTGCAGTGATTGTGCAAAAGAGTTGACGCTTCAATCCAATAAATGCCCTATCTGCCGTCAACCCATTGAGGAACTCATAGGGATTGAGATAAATAAAAGTCGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

338

Amino Acids

38.04

Weight (kDa)

5.29

Isoelectric Point (pI)

60.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06140
fragaria_vesca	FvH4_4g14510
malus_domestica	MD13G1183800.v1.1 MD16G1184200.v1.1
prunus_persica	Prupe.1G151600_v2.0.a1 Prupe.1G151600_v2.0.a1
pyrus_communis	pycom13g15860 pycom16g15470
rosa_chinensis	RchiOBHm_Chr4g0418321
rosa_laevigata	RLG00000007877
rosa_multiflora	Rmu_ssc0000153.1_g000004
rosa_roxburghii	Rroxscaffold_5G00361510
rosa_rugosa	Rorug04G0152200
rosa_samantha	Rh4AG213700 Rh4BG216700 Rh4CG225300 Rh4DG212200
rosa_wichuraiana	Rw4G018150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	892
AciI	CCGC	6 cut(s)	11, 51, 141, 213, 251, 593
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	1 cut(s)	503
AcuI	CTGAAG	2 cut(s)	139, 474
AfaI	GTAC	1 cut(s)	696
AfiI	CCNNNNNNNGG	4 cut(s)	219, 230, 575, 838
AgsI	TTSAA	3 cut(s)	564, 630, 938
AjnI	CCWGG	1 cut(s)	832
AleI	CACNNNNGTG	1 cut(s)	878
AluBI	AGCT	4 cut(s)	337, 692, 775, 801
AluI	AGCT	4 cut(s)	337, 692, 775, 801
AlwNI	CAGNNNCTG	1 cut(s)	748
AoxI	GGCC	4 cut(s)	109, 209, 221, 232
ApaI	GGGCCC	1 cut(s)	236
ApeKI	GCWGC	2 cut(s)	188, 241
ApoI	RAATTY	1 cut(s)	503
ArsI	GACNNNNNNTTYG	4 cut(s)	419, 451, 493, 525
Asp700I	GAANNNNTTC	1 cut(s)	615
AspS9I	GGNCC	4 cut(s)	41, 210, 232, 233
AsuC2I	CCSGG	2 cut(s)	496, 576
AsuHPI	GGTGA	3 cut(s)	295, 564, 725
AvaII	GGWCC	1 cut(s)	41
AxyI	CCTNAGG	2 cut(s)	517, 867
BaeGI	GKGCMC	1 cut(s)	236
BalI	TGGCCA	1 cut(s)	111
BanII	GRGCYC	2 cut(s)	236, 654
BbvI	GCAGC	2 cut(s)	175, 228
BccI	CCATC	2 cut(s)	380, 577
BceAI	ACGGC	1 cut(s)	945
BcgI	CGANNNNNNTGC	2 cut(s)	488, 522
BciT130I	CCWGG	1 cut(s)	834
BclI	TGATCA	1 cut(s)	346
BcnI	CCSGG	2 cut(s)	496, 576
BfaI	CTAG	1 cut(s)	698
BfmI	CTRYAG	2 cut(s)	115, 430
BglI	GCCNNNNNGGC	1 cut(s)	197
BisI	GCNGC	2 cut(s)	189, 242
BlsI	GCNGC	2 cut(s)	190, 243
Bme1390I	CCNGG	3 cut(s)	496, 576, 834
Bme18I	GGWCC	1 cut(s)	41
BmgT120I	GGNCC	4 cut(s)	41, 210, 232, 233
BmiI	GGNNCC	3 cut(s)	234, 235, 493
BmrFI	CCNGG	3 cut(s)	496, 576, 834
BmsI	GCATC	2 cut(s)	274, 364
BpuEI	CTTGAG	2 cut(s)	344, 672
BpuMI	CCSGG	2 cut(s)	496, 576
BsaAI	YACGTR	1 cut(s)	779
BsaJI	CCNNGG	5 cut(s)	144, 228, 414, 832, 833
BsaXI	ACNNNNNCTCC	4 cut(s)	61, 91, 570, 600
Bsc4I	CCNNNNNNNGG	4 cut(s)	219, 230, 575, 838
Bse1I	ACTGG	1 cut(s)	467
Bse21I	CCTNAGG	2 cut(s)	517, 867
BseBI	CCWGG	1 cut(s)	834
BseDI	CCNNGG	5 cut(s)	144, 228, 414, 832, 833
BseGI	GGATG	2 cut(s)	559, 665
BseLI	CCNNNNNNNGG	4 cut(s)	219, 230, 575, 838
BseMII	CTCAG	1 cut(s)	531
BseNI	ACTGG	1 cut(s)	467
BseRI	GAGGAG	4 cut(s)	66, 69, 72, 237
BseSI	GKGCMC	1 cut(s)	236
BseXI	GCAGC	2 cut(s)	175, 228
BsgI	GTGCAG	1 cut(s)	928
BshFI	GGCC	4 cut(s)	111, 211, 223, 234
BsiSI	CCGG	2 cut(s)	495, 576
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	4 cut(s)	219, 230, 575, 838
BsmFI	GGGAC	1 cut(s)	461
BsnI	GGCC	4 cut(s)	111, 211, 223, 234
Bsp120I	GGGCCC	1 cut(s)	232
Bsp1286I	GDGCHC	2 cut(s)	236, 654
Bsp143I	GATC	2 cut(s)	346, 556
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	6 cut(s)	11, 51, 141, 213, 251, 593
BspANI	GGCC	4 cut(s)	111, 211, 223, 234
BspCNI	CTCAG	1 cut(s)	530
BspLI	GGNNCC	3 cut(s)	234, 235, 493
BspQI	GCTCTTC	1 cut(s)	414
BsrI	ACTGG	1 cut(s)	467
BssECI	CCNNGG	5 cut(s)	144, 228, 414, 832, 833
BssMI	GATC	2 cut(s)	346, 556
BssT1I	CCWWGG	2 cut(s)	144, 414
Bst2UI	CCWGG	1 cut(s)	834
Bst4CI	ACNGT	5 cut(s)	119, 400, 431, 750, 808
Bst6I	CTCTTC	2 cut(s)	66, 414
BstBAI	YACGTR	1 cut(s)	779
BstC8I	GCNNGC	2 cut(s)	213, 799
BstDEI	CTNAG	2 cut(s)	517, 867
BstDSI	CCRYGG	2 cut(s)	144, 228
BstEII	GGTNACC	1 cut(s)	713
BstF5I	GGATG	2 cut(s)	559, 665
BstKTI	GATC	2 cut(s)	349, 559
BstMBI	GATC	2 cut(s)	346, 556
BstMWI	GCNNNNNNNGC	4 cut(s)	140, 197, 250, 957
BstNI	CCWGG	1 cut(s)	834
BstPI	GGTNACC	1 cut(s)	713
BstSCI	CCNGG	3 cut(s)	494, 574, 832
BstSFI	CTRYAG	2 cut(s)	115, 430
BstSLI	GKGCMC	1 cut(s)	236
BstV1I	GCAGC	2 cut(s)	175, 228
Bsu36I	CCTNAGG	2 cut(s)	517, 867
BsuRI	GGCC	4 cut(s)	111, 211, 223, 234
BtgI	CCRYGG	2 cut(s)	144, 228
BtsCI	GGATG	2 cut(s)	559, 665
BtsI	GCAGTG	2 cut(s)	873, 916
BtsIMutI	CAGTG	5 cut(s)	405, 474, 813, 873, 916
Cac8I	GCNNGC	2 cut(s)	213, 799
CaiI	CAGNNNCTG	1 cut(s)	748
Cfr13I	GGNCC	4 cut(s)	41, 210, 232, 233
CseI	GACGC	1 cut(s)	940
Csp6I	GTAC	1 cut(s)	695
CviAII	CATG	5 cut(s)	123, 131, 145, 379, 856
CviQI	GTAC	1 cut(s)	695
DdeI	CTNAG	2 cut(s)	517, 867
DpnI	GATC	2 cut(s)	348, 558
DpnII	GATC	2 cut(s)	346, 556
EaeI	YGGCCR	1 cut(s)	109
Eam1104I	CTCTTC	2 cut(s)	66, 414
EarI	CTCTTC	2 cut(s)	66, 414
EciI	GGCGGA	2 cut(s)	130, 240
Eco130I	CCWWGG	2 cut(s)	144, 414
Eco24I	GRGCYC	2 cut(s)	236, 654
Eco47I	GGWCC	1 cut(s)	41
Eco57I	CTGAAG	2 cut(s)	139, 474
Eco81I	CCTNAGG	2 cut(s)	517, 867
Eco91I	GGTNACC	1 cut(s)	713
EcoO109I	RGGNCCY	2 cut(s)	41, 233
EcoO65I	GGTNACC	1 cut(s)	713
EcoRII	CCWGG	1 cut(s)	832
EcoT14I	CCWWGG	2 cut(s)	144, 414
EcoT22I	ATGCAT	1 cut(s)	857
EcoT38I	GRGCYC	2 cut(s)	236, 654
ErhI	CCWWGG	2 cut(s)	144, 414
FaeI	CATG	5 cut(s)	126, 134, 148, 382, 859
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	5 cut(s)	122, 130, 144, 378, 855
FauI	CCCGC	2 cut(s)	58, 220
FauNDI	CATATG	1 cut(s)	897
FbaI	TGATCA	1 cut(s)	346
FblI	GTMKAC	1 cut(s)	892
Fnu4HI	GCNGC	2 cut(s)	189, 242
FokI	GGATG	2 cut(s)	566, 652
FriOI	GRGCYC	2 cut(s)	236, 654
Fsp4HI	GCNGC	2 cut(s)	189, 242
FspBI	CTAG	1 cut(s)	698
GluI	GCNGC	2 cut(s)	189, 242
HaeIII	GGCC	4 cut(s)	111, 211, 223, 234
HapII	CCGG	2 cut(s)	495, 576
HgaI	GACGC	1 cut(s)	940
Hin1II	CATG	5 cut(s)	126, 134, 148, 382, 859
HincII	GTYRAC	4 cut(s)	298, 893, 930, 965
HindII	GTYRAC	4 cut(s)	298, 893, 930, 965
HinfI	GANTC	1 cut(s)	474
HpaII	CCGG	2 cut(s)	495, 576
HphI	GGTGA	3 cut(s)	295, 564, 725
Hpy166II	GTNNAC	4 cut(s)	298, 893, 930, 965
Hpy188I	TCNGA	2 cut(s)	270, 486
Hpy188III	TCNNGA	1 cut(s)	519
Hpy8I	GTNNAC	4 cut(s)	298, 893, 930, 965
HpyAV	CCTTC	4 cut(s)	274, 481, 806, 832
HpyCH4III	ACNGT	5 cut(s)	119, 400, 431, 750, 808
HpyCH4IV	ACGT	3 cut(s)	258, 300, 778
HpyCH4V	TGCA	6 cut(s)	126, 304, 679, 855, 909, 920
HpyF10VI	GCNNNNNNNGC	4 cut(s)	140, 197, 250, 957
HpyF3I	CTNAG	2 cut(s)	517, 867
HpySE526I	ACGT	3 cut(s)	258, 300, 778
Hsp92II	CATG	5 cut(s)	126, 134, 148, 382, 859
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	2 cut(s)	346, 556
LguI	GCTCTTC	1 cut(s)	414
LmnI	GCTCC	1 cut(s)	390
Lsp1109I	GCAGC	2 cut(s)	175, 228
LweI	GCATC	2 cut(s)	274, 364
MaeI	CTAG	1 cut(s)	698
MaeII	ACGT	3 cut(s)	258, 300, 778
MaeIII	GTNAC	2 cut(s)	158, 713
MalI	GATC	2 cut(s)	348, 558
MboI	GATC	2 cut(s)	346, 556
MboII	GAAGA	4 cut(s)	53, 298, 431, 593
MhlI	GDGCHC	2 cut(s)	236, 654
MlsI	TGGCCA	1 cut(s)	111
MluCI	AATT	6 cut(s)	136, 163, 169, 216, 503, 735
MluNI	TGGCCA	1 cut(s)	111
MlyI	GAGTC	1 cut(s)	483
MmeI	TCCRAC	1 cut(s)	531
Mox20I	TGGCCA	1 cut(s)	111
Mph1103I	ATGCAT	1 cut(s)	857
MroXI	GAANNNNTTC	1 cut(s)	615
MscI	TGGCCA	1 cut(s)	111
MslI	CAYNNNNRTG	2 cut(s)	398, 878
Msp20I	TGGCCA	1 cut(s)	111
MspI	CCGG	2 cut(s)	495, 576
MspR9I	CCNGG	3 cut(s)	496, 576, 834
MvaI	CCWGG	1 cut(s)	834
MwoI	GCNNNNNNNGC	4 cut(s)	140, 197, 250, 957
NciI	CCSGG	2 cut(s)	496, 576
NcoI	CCATGG	1 cut(s)	144
NdeI	CATATG	1 cut(s)	897
NdeII	GATC	2 cut(s)	346, 556
NlaIII	CATG	5 cut(s)	126, 134, 148, 382, 859
NlaIV	GGNNCC	3 cut(s)	234, 235, 493
NmuCI	GTSAC	1 cut(s)	713
NsiI	ATGCAT	1 cut(s)	857
OliI	CACNNNNGTG	1 cut(s)	878
PasI	CCCWGGG	1 cut(s)	833
PciSI	GCTCTTC	1 cut(s)	414
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PdmI	GAANNNNTTC	1 cut(s)	615
PkrI	GCNGC	2 cut(s)	190, 243
PleI	GAGTC	1 cut(s)	482
PpsI	GAGTC	1 cut(s)	482
Ppu21I	YACGTR	1 cut(s)	779
PpuMI	RGGWCCY	1 cut(s)	41
Psp5II	RGGWCCY	1 cut(s)	41
Psp6I	CCWGG	1 cut(s)	832
PspEI	GGTNACC	1 cut(s)	713
PspGI	CCWGG	1 cut(s)	832
PspN4I	GGNNCC	3 cut(s)	234, 235, 493
PspOMI	GGGCCC	1 cut(s)	232
PspPI	GGNCC	4 cut(s)	41, 210, 232, 233
PspPPI	RGGWCCY	1 cut(s)	41
PstNI	CAGNNNCTG	1 cut(s)	748
RsaI	GTAC	1 cut(s)	696
RsaNI	GTAC	1 cut(s)	695
RseI	CAYNNNNRTG	2 cut(s)	398, 878
SalI	GTCGAC	1 cut(s)	891
SapI	GCTCTTC	1 cut(s)	414
SatI	GCNGC	2 cut(s)	189, 242
Sau3AI	GATC	2 cut(s)	346, 556
Sau96I	GGNCC	4 cut(s)	41, 210, 232, 233
SchI	GAGTC	1 cut(s)	483
ScrFI	CCNGG	3 cut(s)	496, 576, 834
SduI	GDGCHC	2 cut(s)	236, 654
SfaNI	GCATC	2 cut(s)	274, 364
SfcI	CTRYAG	2 cut(s)	115, 430
SinI	GGWCC	1 cut(s)	41
SmiMI	CAYNNNNRTG	2 cut(s)	398, 878
SmlI	CTYRAG	2 cut(s)	323, 687
SmoI	CTYRAG	2 cut(s)	323, 687
Sse9I	AATT	6 cut(s)	136, 163, 169, 216, 503, 735
SsiI	CCGC	6 cut(s)	11, 51, 141, 213, 251, 593
SspMI	CTAG	1 cut(s)	698
StyD4I	CCNGG	3 cut(s)	494, 574, 832
StyI	CCWWGG	2 cut(s)	144, 414
TaaI	ACNGT	5 cut(s)	119, 400, 431, 750, 808
TaiI	ACGT	3 cut(s)	261, 303, 781
TaqI	TCGA	3 cut(s)	372, 803, 892
TasI	AATT	6 cut(s)	136, 163, 169, 216, 503, 735
TatI	WGTACW	1 cut(s)	694
TscAI	CASTG	5 cut(s)	405, 474, 813, 880, 916
TseFI	GTSAC	1 cut(s)	713
TseI	GCWGC	2 cut(s)	188, 241
Tsp45I	GTSAC	1 cut(s)	713
TspDTI	ATGAA	2 cut(s)	111, 774
TspRI	CASTG	5 cut(s)	405, 474, 813, 880, 916
VpaK11BI	GGWCC	1 cut(s)	41
XapI	RAATTY	1 cut(s)	503
XcmI	CCANNNNNNNNNTGG	2 cut(s)	104, 142
XmiI	GTMKAC	1 cut(s)	892
XmnI	GAANNNNTTC	1 cut(s)	615
XspI	CTAG	1 cut(s)	698
Zsp2I	ATGCAT	1 cut(s)	857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.