Rroxscaffold_5G00361510

E3 ubiquitin-protein ligase LUL4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0013528
Physical Location & Seq
Reverse (-)
42213655 .. 42217599
3945 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00361510.1

Sequence Viewer

Length: 1128 bp
ATGGGGATTTCTTTCAGCAGCAACCGAAGACGTAACCACTACTACCAACACCCACCGCCGCCTCAGCCCCTCTACCTCTCCAATCCTCACTACTACCCCTCCGACCCACCCTCTTTCTCTCCGCCGCCTCCTCCGCCGCCGGTGACTTCTTTCTCTTCCTCCTCCTCCTCCTCCTCTTCTTCCGCCACCTACCCAGAACCCAATTCCGCCACCCCTTACGCAGCGCCGCCGCCCAGGGCTCCATACCAGGCCTACCCTCTTCCTCCGCCGCCGCCGCCGCCGCAGTCGCATTACTGCTATGGTCAGTACAATTCTTGCAACCACGCGAATCCGATGATGGGTCGGTTCAGTTACAACCATAATTACCAGCCTTACTATGGTAATCAGGCGAGTGGGTGGCCGGCGATCCGGCCTCCGGTGGCCCCCCTTTATCCTCCGCCGCCGTACGTGGAGCACCAGAGTGCCAAGAAGGTGAAGAATGACGTCAACGTGCGTAAGGACACGTTGAGGCTTGAGATTGATGAGCAGAACCCTGATCAGCATTTGGTCTCGTTCGTTTTCGATGCCTTGTATGATGGGAGCATTACTATTCTCTACTTTGCCAAGGAAGAGGCAGATTGTACATTTGTTCCACTATTTCCTGAAGCATTTACGCCGGTGCAAGTCCCTTTTCAGAAAGGAGTAGGCCAGAAATTTTGTCAGCCCTCAGGAACTGGCATCGATTTAGGCTTCTTCGAGTTGGATGATCTGTCAAAACCCTCACCGGGAGAAGATGTATTCCCACTTGTAATATCTGCGGAAACACGTACGCCGCCTGATTCAATCGACCATATTGGTGAGCCTGTCCAAGATGCATCTCCTCGTATGCAGATCACTCAAGCTGTGCTAGAAAAGAATAATGGTGAACCTTTCCAAGTGAAAGTAATTAAGCAGATACTGTGGATTGATGAAGTTCGCTATGAACTACGTGAGATATATGGAATTGCAACCTCAGCAGTGGAAGGCTTTGATGACAATGACCCTGGGAAGGAGTGTGTAATATGCATGACCGAACCGAAGGACACTGCTGTATTACCTTGTCGACATATGATGAATCTAATTAATCCTCAAAAGAATGAACTTTCATAA

Protein Analysis

375

Amino Acids

41.87

Weight (kDa)

5.19

Isoelectric Point (pI)

65.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNF157-like_N PF26192 162 - 322 1.8e-70 RNF157-like N-terminal domain
zf-C3HC4_3 PF13920 343 - 363 1e-05 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06140
fragaria_vesca FvH4_4g14510
malus_domestica MD13G1183800.v1.1 MD16G1184200.v1.1
prunus_persica Prupe.1G151600_v2.0.a1 Prupe.1G151600_v2.0.a1
pyrus_communis pycom13g15860 pycom16g15470
rosa_chinensis RchiOBHm_Chr4g0418321
rosa_laevigata RLG00000007877
rosa_multiflora Rmu_ssc0000153.1_g000004
rosa_roxburghii Rroxscaffold_5G00361510
rosa_rugosa Rorug04G0152200
rosa_samantha Rh4AG213700 Rh4BG216700 Rh4CG225300 Rh4DG212200
rosa_wichuraiana Rw4G018150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 486
AccI GTMKAC 1 cut(s) 1081
AccII CGCG 1 cut(s) 326
AclWI GGATC 1 cut(s) 400
AcoI YGGCCR 1 cut(s) 398
AcsI RAATTY 1 cut(s) 692
AcuI CTGAAG 1 cut(s) 663
AcyI GRCGYC 1 cut(s) 483
AfaI GTAC 4 cut(s) 308, 446, 622, 808
AfiI CCNNNNNNNGG 5 cut(s) 338, 377, 415, 764, 1027
AflIII ACRYGT 2 cut(s) 501, 803
AgsI TTSAA 1 cut(s) 822
AjnI CCWGG 3 cut(s) 233, 246, 1021
AleI CACNNNNGTG 1 cut(s) 459
AluBI AGCT 1 cut(s) 881
AluI AGCT 1 cut(s) 881
Alw21I GWGCWC 1 cut(s) 456
Alw26I GTCTC 1 cut(s) 553
AlwI GGATC 1 cut(s) 400
AlwNI CAGNNNCTG 2 cut(s) 713, 937
AoxI GGCC 5 cut(s) 249, 398, 410, 420, 685
ApeKI GCWGC 2 cut(s) 18, 221
ApoI RAATTY 1 cut(s) 692
AseI ATTAAT 1 cut(s) 1101
AspLEI GCGC 1 cut(s) 226
AspS9I GGNCC 1 cut(s) 421
AsuC2I CCSGG 1 cut(s) 765
AsuHPI GGTGA 5 cut(s) 154, 484, 753, 848, 914
AxyI CCTNAGG 1 cut(s) 706
BanII GRGCYC 1 cut(s) 241
BbsI GAAGAC 1 cut(s) 34
Bbv12I GWGCWC 1 cut(s) 456
BbvCI CCTCAGC 2 cut(s) 63, 991
BbvI GCAGC 2 cut(s) 30, 233
BccI CCATC 2 cut(s) 331, 569
BceAI ACGGC 1 cut(s) 427
BciT130I CCWGG 3 cut(s) 235, 248, 1023
BclI TGATCA 1 cut(s) 535
BcnI CCSGG 1 cut(s) 765
BcoDI GTCTC 1 cut(s) 553
BfaI CTAG 1 cut(s) 887
BfoI RGCGCY 1 cut(s) 227
Bme1390I CCNGG 4 cut(s) 235, 248, 765, 1023
BmgT120I GGNCC 1 cut(s) 421
BmiI GGNNCC 2 cut(s) 240, 423
BmrFI CCNGG 4 cut(s) 235, 248, 765, 1023
BmsI GCATC 4 cut(s) 553, 726, 841, 863
BpiI GAAGAC 1 cut(s) 34
Bpu10I CCTNAGC 2 cut(s) 63, 991
BpuEI CTTGAG 2 cut(s) 533, 861
BpuMI CCSGG 1 cut(s) 765
Bsa29I ATCGAT 1 cut(s) 720
BsaAI YACGTR 3 cut(s) 448, 806, 968
BsaHI GRCGYC 1 cut(s) 483
BsaI GGTCTC 1 cut(s) 553
BsaJI CCNNGG 5 cut(s) 233, 234, 603, 1021, 1022
BsaWI WCCGGW 1 cut(s) 415
BsaXI ACNNNNNCTCC 4 cut(s) 83, 113, 759, 789
Bsc4I CCNNNNNNNGG 5 cut(s) 338, 377, 415, 764, 1027
Bse118I RCCGGY 3 cut(s) 139, 400, 655
Bse1I ACTGG 1 cut(s) 718
Bse21I CCTNAGG 1 cut(s) 706
BseBI CCWGG 3 cut(s) 235, 248, 1023
BseCI ATCGAT 1 cut(s) 720
BseDI CCNNGG 5 cut(s) 233, 234, 603, 1021, 1022
BseGI GGATG 1 cut(s) 748
BseLI CCNNNNNNNGG 5 cut(s) 338, 377, 415, 764, 1027
BseMII CTCAG 3 cut(s) 77, 720, 1005
BseNI ACTGG 1 cut(s) 718
BseRI GAGGAG 7 cut(s) 120, 151, 154, 157, 160, 163, 849
BseXI GCAGC 2 cut(s) 30, 233
Bsh1236I CGCG 1 cut(s) 326
BshFI GGCC 5 cut(s) 251, 400, 412, 422, 687
BshVI ATCGAT 1 cut(s) 720
BsiHKAI GWGCWC 1 cut(s) 456
BsiSI CCGG 6 cut(s) 140, 401, 409, 416, 656, 764
BsiWI CGTACG 2 cut(s) 444, 806
BslFI GGGAC 1 cut(s) 650
BslI CCNNNNNNNGG 5 cut(s) 338, 377, 415, 764, 1027
BsmAI GTCTC 1 cut(s) 553
BsmFI GGGAC 1 cut(s) 650
BsnI GGCC 5 cut(s) 251, 400, 412, 422, 687
Bso31I GGTCTC 1 cut(s) 553
Bsp1286I GDGCHC 2 cut(s) 241, 456
Bsp1407I TGTACA 1 cut(s) 620
Bsp143I GATC 4 cut(s) 405, 535, 745, 870
BspANI GGCC 5 cut(s) 251, 400, 412, 422, 687
BspCNI CTCAG 3 cut(s) 76, 719, 1004
BspDI ATCGAT 1 cut(s) 720
BspFNI CGCG 1 cut(s) 326
BspLI GGNNCC 2 cut(s) 240, 423
BspPI GGATC 1 cut(s) 400
BspTNI GGTCTC 1 cut(s) 553
BsrFI RCCGGY 3 cut(s) 139, 400, 655
BsrGI TGTACA 1 cut(s) 620
BsrI ACTGG 1 cut(s) 718
BssAI RCCGGY 3 cut(s) 139, 400, 655
BssECI CCNNGG 5 cut(s) 233, 234, 603, 1021, 1022
BssMI GATC 4 cut(s) 405, 535, 745, 870
BssNI GRCGYC 1 cut(s) 483
BssT1I CCWWGG 1 cut(s) 603
Bst2UI CCWGG 3 cut(s) 235, 248, 1023
Bst4CI ACNGT 1 cut(s) 939
Bst6I CTCTTC 4 cut(s) 160, 181, 264, 603
BstACI GRCGYC 1 cut(s) 483
BstAUI TGTACA 1 cut(s) 620
BstBAI YACGTR 3 cut(s) 448, 806, 968
BstC8I GCNNGC 1 cut(s) 402
BstDEI CTNAG 3 cut(s) 63, 706, 991
BstF5I GGATG 1 cut(s) 748
BstFNI CGCG 1 cut(s) 326
BstH2I RGCGCY 1 cut(s) 227
BstHHI GCGC 1 cut(s) 226
BstKTI GATC 4 cut(s) 408, 538, 748, 873
BstMAI GTCTC 1 cut(s) 553
BstMBI GATC 4 cut(s) 405, 535, 745, 870
BstMWI GCNNNNNNNGC 7 cut(s) 64, 133, 274, 277, 280, 286, 992
BstNI CCWGG 3 cut(s) 235, 248, 1023
BstSCI CCNGG 4 cut(s) 233, 246, 763, 1021
BstUI CGCG 1 cut(s) 326
BstV1I GCAGC 2 cut(s) 30, 233
BstV2I GAAGAC 1 cut(s) 34
Bsu15I ATCGAT 1 cut(s) 720
Bsu36I CCTNAGG 1 cut(s) 706
BsuRI GGCC 5 cut(s) 251, 400, 412, 422, 687
BsuTUI ATCGAT 1 cut(s) 720
BtsCI GGATG 1 cut(s) 748
BtsI GCAGTG 2 cut(s) 1002, 1062
BtsIMutI CAGTG 2 cut(s) 1002, 1062
Cac8I GCNNGC 1 cut(s) 402
CaiI CAGNNNCTG 2 cut(s) 713, 937
CfoI GCGC 1 cut(s) 226
Cfr10I RCCGGY 3 cut(s) 139, 400, 655
Cfr13I GGNCC 1 cut(s) 421
ClaI ATCGAT 1 cut(s) 720
Csp6I GTAC 4 cut(s) 307, 445, 621, 807
CviAII CATG 1 cut(s) 1045
CviQI GTAC 4 cut(s) 307, 445, 621, 807
DdeI CTNAG 3 cut(s) 63, 706, 991
DpnI GATC 4 cut(s) 407, 537, 747, 872
DpnII GATC 4 cut(s) 405, 535, 745, 870
EaeI YGGCCR 1 cut(s) 398
Eam1104I CTCTTC 4 cut(s) 160, 181, 264, 603
EarI CTCTTC 4 cut(s) 160, 181, 264, 603
EciI GGCGGA 6 cut(s) 111, 123, 172, 196, 255, 426
Eco130I CCWWGG 1 cut(s) 603
Eco147I AGGCCT 1 cut(s) 251
Eco24I GRGCYC 1 cut(s) 241
Eco31I GGTCTC 1 cut(s) 553
Eco57I CTGAAG 1 cut(s) 663
Eco81I CCTNAGG 1 cut(s) 706
EcoRII CCWGG 3 cut(s) 233, 246, 1021
EcoT14I CCWWGG 1 cut(s) 603
EcoT22I ATGCAT 2 cut(s) 856, 1046
EcoT38I GRGCYC 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 603
FaeI CATG 1 cut(s) 1048
FaqI GGGAC 1 cut(s) 650
FatI CATG 1 cut(s) 1044
FauNDI CATATG 1 cut(s) 1086
FbaI TGATCA 1 cut(s) 535
FblI GTMKAC 1 cut(s) 1081
FokI GGATG 1 cut(s) 755
FriOI GRGCYC 1 cut(s) 241
FspBI CTAG 1 cut(s) 887
GlaI GCGC 1 cut(s) 225
HaeII RGCGCY 1 cut(s) 227
HaeIII GGCC 5 cut(s) 251, 400, 412, 422, 687
HapII CCGG 6 cut(s) 140, 401, 409, 416, 656, 764
HhaI GCGC 1 cut(s) 226
Hin1I GRCGYC 1 cut(s) 483
Hin1II CATG 1 cut(s) 1048
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HincII GTYRAC 2 cut(s) 487, 1082
HindII GTYRAC 2 cut(s) 487, 1082
HinfI GANTC 3 cut(s) 328, 818, 1093
HpaII CCGG 6 cut(s) 140, 401, 409, 416, 656, 764
HphI GGTGA 5 cut(s) 154, 484, 753, 848, 914
Hpy166II GTNNAC 3 cut(s) 487, 905, 1082
Hpy188I TCNGA 3 cut(s) 103, 333, 675
Hpy188III TCNNGA 2 cut(s) 641, 708
Hpy8I GTNNAC 3 cut(s) 487, 905, 1082
HpyAV CCTTC 4 cut(s) 463, 995, 1021, 1051
HpyCH4III ACNGT 1 cut(s) 939
HpyCH4IV ACGT 7 cut(s) 31, 447, 483, 489, 503, 805, 967
HpyCH4V TGCA 6 cut(s) 318, 661, 854, 868, 986, 1044
HpyF10VI GCNNNNNNNGC 7 cut(s) 64, 133, 274, 277, 280, 286, 992
HpyF3I CTNAG 3 cut(s) 63, 706, 991
HpySE526I ACGT 7 cut(s) 31, 447, 483, 489, 503, 805, 967
Hsp92I GRCGYC 1 cut(s) 483
Hsp92II CATG 1 cut(s) 1048
HspAI GCGC 1 cut(s) 224
KroI GCCGGC 1 cut(s) 400
KroNI GCCGGC 1 cut(s) 402
Ksp22I TGATCA 1 cut(s) 535
Kzo9I GATC 4 cut(s) 405, 535, 745, 870
LmnI GCTCC 3 cut(s) 244, 451, 579
Lsp1109I GCAGC 2 cut(s) 30, 233
LweI GCATC 4 cut(s) 553, 726, 841, 863
MaeI CTAG 1 cut(s) 887
MaeII ACGT 7 cut(s) 31, 447, 483, 489, 503, 805, 967
MaeIII GTNAC 3 cut(s) 32, 142, 350
MalI GATC 4 cut(s) 407, 537, 747, 872
MboI GATC 4 cut(s) 405, 535, 745, 870
MboII GAAGA 9 cut(s) 39, 147, 168, 171, 251, 487, 620, 724, 782
MhlI GDGCHC 2 cut(s) 241, 456
MluCI AATT 7 cut(s) 202, 310, 361, 692, 924, 981, 1098
MmeI TCCRAC 2 cut(s) 126, 720
Mph1103I ATGCAT 2 cut(s) 856, 1046
MroNI GCCGGC 1 cut(s) 400
MseI TTAA 2 cut(s) 927, 1101
MslI CAYNNNNRTG 2 cut(s) 459, 834
MspI CCGG 6 cut(s) 140, 401, 409, 416, 656, 764
MspR9I CCNGG 4 cut(s) 235, 248, 765, 1023
MvaI CCWGG 3 cut(s) 235, 248, 1023
MvnI CGCG 1 cut(s) 326
MwoI GCNNNNNNNGC 7 cut(s) 64, 133, 274, 277, 280, 286, 992
NaeI GCCGGC 1 cut(s) 402
NciI CCSGG 1 cut(s) 765
NdeI CATATG 1 cut(s) 1086
NdeII GATC 4 cut(s) 405, 535, 745, 870
NgoMIV GCCGGC 1 cut(s) 400
NlaIII CATG 1 cut(s) 1048
NlaIV GGNNCC 2 cut(s) 240, 423
NmuCI GTSAC 1 cut(s) 142
NsiI ATGCAT 2 cut(s) 856, 1046
OliI CACNNNNGTG 1 cut(s) 459
PasI CCCWGGG 2 cut(s) 234, 1022
PceI AGGCCT 1 cut(s) 251
PdiI GCCGGC 1 cut(s) 402
PfeI GAWTC 3 cut(s) 328, 818, 1093
Pfl23II CGTACG 2 cut(s) 444, 806
Ppu21I YACGTR 3 cut(s) 448, 806, 968
PshBI ATTAAT 1 cut(s) 1101
Psp6I CCWGG 3 cut(s) 233, 246, 1021
PspGI CCWGG 3 cut(s) 233, 246, 1021
PspLI CGTACG 2 cut(s) 444, 806
PspN4I GGNNCC 2 cut(s) 240, 423
PspPI GGNCC 1 cut(s) 421
PstNI CAGNNNCTG 2 cut(s) 713, 937
RsaI GTAC 4 cut(s) 308, 446, 622, 808
RsaNI GTAC 4 cut(s) 307, 445, 621, 807
RseI CAYNNNNRTG 2 cut(s) 459, 834
SalI GTCGAC 1 cut(s) 1080
SaqAI TTAA 2 cut(s) 927, 1101
Sau3AI GATC 4 cut(s) 405, 535, 745, 870
Sau96I GGNCC 1 cut(s) 421
ScrFI CCNGG 4 cut(s) 235, 248, 765, 1023
SduI GDGCHC 2 cut(s) 241, 456
SfaNI GCATC 4 cut(s) 553, 726, 841, 863
SgrAI CRCCGGYG 2 cut(s) 139, 655
SmiMI CAYNNNNRTG 2 cut(s) 459, 834
SmlI CTYRAG 2 cut(s) 512, 876
SmoI CTYRAG 2 cut(s) 512, 876
Sse9I AATT 7 cut(s) 202, 310, 361, 692, 924, 981, 1098
SseBI AGGCCT 1 cut(s) 251
SspMI CTAG 1 cut(s) 887
StuI AGGCCT 1 cut(s) 251
StyD4I CCNGG 4 cut(s) 233, 246, 763, 1021
StyI CCWWGG 1 cut(s) 603
TaaI ACNGT 1 cut(s) 939
TaiI ACGT 7 cut(s) 34, 450, 486, 492, 506, 808, 970
TaqI TCGA 5 cut(s) 561, 720, 735, 825, 1081
TaqII GACCGA 1 cut(s) 1064
TasI AATT 7 cut(s) 202, 310, 361, 692, 924, 981, 1098
TatI WGTACW 2 cut(s) 306, 620
TfiI GAWTC 3 cut(s) 328, 818, 1093
Tru1I TTAA 2 cut(s) 927, 1101
Tru9I TTAA 2 cut(s) 927, 1101
TscAI CASTG 2 cut(s) 1002, 1069
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 2 cut(s) 18, 221
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 4 cut(s) 963, 975, 1106, 1113
TspRI CASTG 2 cut(s) 1002, 1069
VspI ATTAAT 1 cut(s) 1101
XapI RAATTY 1 cut(s) 692
XcmI CCANNNNNNNNNTGG 1 cut(s) 374
XmiI GTMKAC 1 cut(s) 1081
XspI CTAG 1 cut(s) 887
ZraI GACGTC 1 cut(s) 484
Zsp2I ATGCAT 2 cut(s) 856, 1046
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.