Rh4AG213700

E3 ubiquitin-protein ligase LUL4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0013528
Physical Location & Seq
Reverse (-)
50773819 .. 50777402
3584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG213700.1

Sequence Viewer

Length: 1203 bp
ATGGGGATTTCTTTCAGCAGCAACCGAAGACGTAACAACTACTACCAACACCCGCCGCCGCCTCAGCCCCTCTACCTCTCCAATCCTCACTACTACCCCTCCGACCCACCCTCTTTCTCTCCGCCGCCGCCACCCCCGCCGCCGGTGACTTCTTTTTCTTCCTCCTCCTCCTCCTCTTCTTCTTCCGCCACCTACCCAGAACCCAATTCCGCCACCCCTTACTCCGCGCCGCCGCCTCCCAGGGCTCCATACCAGGGCTACCCTCTTCCTCCGCCGCCGCCGCAGTCGCATTACTGCTACGGTCAGTACAATTCTTGCAACCACGCGAATCCGATGATGGGTCGGTTCAGTTACAACCACAATTACCAGCCTTACTACGGTAATCAGGCGAGTGGGTGGCCGGCGATGCGGCCTCCGGTGGCCCCCCTTTATCCTCCGCCGCCGTACGTGGAGCACCAGAGTGCCAAGAAGGTGAAGAATGACGTCAACGTGCGTAAGGACACGTTGAGGCTGGAGATTGATGAGCAGAACCCTGATCAGCATTTGGTCTCGTTCGTTTTCGATGCCTTGTATGATGGGAGCATTACTATTCTCTACTTTGCCAAGGAAGAGGCAGATTGTACATTTGTTCCACTATTTCCTGAAGCATTTACACCGGTGCAAGTCCCTTTTCAGAAAGGAGTAGGCCAGAAATTTTGTCAGCCCTCAGGAACAGGCATCGATTTAGGCTTCTTCGAGTTGGATGATCTGTCAAAACCCTCACCTGGAGAAGATGTATTCCCACTTGTAATATCTGCGGAAACACGTACGCCGCCTGATTCAATCGACCATATTGGTGAGCCTGTCCAAGATGCATCTCCTCGTATGCAGATCACTCAAGCTGTGCTAGAAAAAAATAATGGTGACCCTTTCCAAGTGAAAGTAATTAAGCAGATACTGTGGATTGATGAAGTTCGCTATGAACTACGTGAGATATATGGAATTGCAACCTCAGCAGTGGAAGGCTTTGATGACAATGACCCTGGGAAGGAGTGTGTAATATGCATGACCGAACCGAAGGACACTGCTGTATTACCTTGTCGACATATGTGTATGTGCAGTGACTGTGCAAAAGAATTGAGGATTCAATCCAATAAATGCCCCATTTGCCGACAACCCATTGAAGAACTTATAGAGATAAAGATGAATAAAAGCCAGCAATGA

Protein Analysis

400

Amino Acids

44.76

Weight (kDa)

5.24

Isoelectric Point (pI)

69.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNF157-like_N PF26192 162 - 322 1.6e-70 RNF157-like N-terminal domain
zf-C3HC4_3 PF13920 343 - 389 8.6e-18 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 344 - 384 1.6e-07 Ring finger domain
Prok-RING_4 PF14447 345 - 388 2.3e-06 Prokaryotic RING finger family 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06140
fragaria_vesca FvH4_4g14510
malus_domestica MD13G1183800.v1.1 MD16G1184200.v1.1
prunus_persica Prupe.1G151600_v2.0.a1 Prupe.1G151600_v2.0.a1
pyrus_communis pycom13g15860 pycom16g15470
rosa_chinensis RchiOBHm_Chr4g0418321
rosa_laevigata RLG00000007877
rosa_multiflora Rmu_ssc0000153.1_g000004
rosa_roxburghii Rroxscaffold_5G00361510
rosa_rugosa Rorug04G0152200
rosa_samantha Rh4AG213700 Rh4BG216700 Rh4CG225300 Rh4DG212200
rosa_wichuraiana Rw4G018150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 486
AccI GTMKAC 1 cut(s) 1081
AccII CGCG 2 cut(s) 227, 326
AcoI YGGCCR 1 cut(s) 398
AcsI RAATTY 1 cut(s) 692
AcuI CTGAAG 1 cut(s) 663
AcyI GRCGYC 1 cut(s) 483
AfaI GTAC 4 cut(s) 308, 446, 622, 808
AfiI CCNNNNNNNGG 6 cut(s) 142, 254, 338, 377, 764, 1027
AflIII ACRYGT 2 cut(s) 501, 803
AgeI ACCGGT 1 cut(s) 655
AgsI TTSAA 3 cut(s) 822, 1127, 1163
AjnI CCWGG 4 cut(s) 239, 252, 763, 1021
AleI CACNNNNGTG 1 cut(s) 459
AluBI AGCT 1 cut(s) 881
AluI AGCT 1 cut(s) 881
Alw21I GWGCWC 1 cut(s) 456
Alw26I GTCTC 1 cut(s) 553
AlwNI CAGNNNCTG 2 cut(s) 937, 1104
AoxI GGCC 4 cut(s) 398, 410, 420, 685
ApeKI GCWGC 1 cut(s) 18
ApoI RAATTY 1 cut(s) 692
AsiGI ACCGGT 1 cut(s) 655
AspLEI GCGC 1 cut(s) 229
AspS9I GGNCC 1 cut(s) 421
AsuHPI GGTGA 5 cut(s) 157, 484, 753, 848, 914
AxyI CCTNAGG 1 cut(s) 706
BanII GRGCYC 1 cut(s) 247
BbsI GAAGAC 1 cut(s) 34
Bbv12I GWGCWC 1 cut(s) 456
BbvCI CCTCAGC 2 cut(s) 63, 991
BbvI GCAGC 1 cut(s) 30
BccI CCATC 2 cut(s) 331, 569
BceAI ACGGC 1 cut(s) 427
BciT130I CCWGG 4 cut(s) 241, 254, 765, 1023
BclI TGATCA 1 cut(s) 535
BcoDI GTCTC 1 cut(s) 553
BfaI CTAG 1 cut(s) 887
Bme1390I CCNGG 4 cut(s) 241, 254, 765, 1023
BmgT120I GGNCC 1 cut(s) 421
BmiI GGNNCC 2 cut(s) 246, 423
BmrFI CCNGG 4 cut(s) 241, 254, 765, 1023
BmsI GCATC 5 cut(s) 396, 553, 726, 841, 863
BpiI GAAGAC 1 cut(s) 34
BpmI CTGGAG 2 cut(s) 533, 786
Bpu10I CCTNAGC 2 cut(s) 63, 991
BpuEI CTTGAG 1 cut(s) 861
Bsa29I ATCGAT 1 cut(s) 720
BsaAI YACGTR 3 cut(s) 448, 806, 968
BsaHI GRCGYC 1 cut(s) 483
BsaI GGTCTC 1 cut(s) 553
BsaJI CCNNGG 6 cut(s) 239, 240, 253, 603, 1021, 1022
BsaWI WCCGGW 2 cut(s) 415, 655
BsaXI ACNNNNNCTCC 4 cut(s) 83, 113, 759, 789
Bsc4I CCNNNNNNNGG 6 cut(s) 142, 254, 338, 377, 764, 1027
Bse118I RCCGGY 3 cut(s) 142, 400, 655
Bse21I CCTNAGG 1 cut(s) 706
BseBI CCWGG 4 cut(s) 241, 254, 765, 1023
BseCI ATCGAT 1 cut(s) 720
BseDI CCNNGG 6 cut(s) 239, 240, 253, 603, 1021, 1022
BseGI GGATG 1 cut(s) 748
BseLI CCNNNNNNNGG 6 cut(s) 142, 254, 338, 377, 764, 1027
BseMII CTCAG 3 cut(s) 77, 720, 1005
BseRI GAGGAG 5 cut(s) 154, 157, 160, 163, 849
BseXI GCAGC 1 cut(s) 30
BsgI GTGCAG 1 cut(s) 1117
Bsh1236I CGCG 2 cut(s) 227, 326
BshFI GGCC 4 cut(s) 400, 412, 422, 687
BshTI ACCGGT 1 cut(s) 655
BshVI ATCGAT 1 cut(s) 720
BsiHKAI GWGCWC 1 cut(s) 456
BsiSI CCGG 4 cut(s) 143, 401, 416, 656
BsiWI CGTACG 2 cut(s) 444, 806
BslFI GGGAC 1 cut(s) 650
BslI CCNNNNNNNGG 6 cut(s) 142, 254, 338, 377, 764, 1027
BsmAI GTCTC 1 cut(s) 553
BsmFI GGGAC 1 cut(s) 650
BsnI GGCC 4 cut(s) 400, 412, 422, 687
Bso31I GGTCTC 1 cut(s) 553
Bsp1286I GDGCHC 2 cut(s) 247, 456
Bsp1407I TGTACA 1 cut(s) 620
Bsp143I GATC 3 cut(s) 535, 745, 870
BspANI GGCC 4 cut(s) 400, 412, 422, 687
BspCNI CTCAG 3 cut(s) 76, 719, 1004
BspDI ATCGAT 1 cut(s) 720
BspFNI CGCG 2 cut(s) 227, 326
BspLI GGNNCC 2 cut(s) 246, 423
BspTNI GGTCTC 1 cut(s) 553
BsrFI RCCGGY 3 cut(s) 142, 400, 655
BsrGI TGTACA 1 cut(s) 620
BssAI RCCGGY 3 cut(s) 142, 400, 655
BssECI CCNNGG 6 cut(s) 239, 240, 253, 603, 1021, 1022
BssMI GATC 3 cut(s) 535, 745, 870
BssNI GRCGYC 1 cut(s) 483
BssT1I CCWWGG 1 cut(s) 603
Bst2UI CCWGG 4 cut(s) 241, 254, 765, 1023
Bst4CI ACNGT 4 cut(s) 302, 380, 939, 1106
Bst6I CTCTTC 3 cut(s) 181, 270, 603
BstACI GRCGYC 1 cut(s) 483
BstAUI TGTACA 1 cut(s) 620
BstBAI YACGTR 3 cut(s) 448, 806, 968
BstC8I GCNNGC 2 cut(s) 402, 1196
BstDEI CTNAG 3 cut(s) 63, 706, 991
BstEII GGTNACC 1 cut(s) 902
BstF5I GGATG 1 cut(s) 748
BstFNI CGCG 2 cut(s) 227, 326
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 3 cut(s) 538, 748, 873
BstMAI GTCTC 1 cut(s) 553
BstMBI GATC 3 cut(s) 535, 745, 870
BstMWI GCNNNNNNNGC 7 cut(s) 64, 136, 280, 286, 406, 992, 1146
BstNI CCWGG 4 cut(s) 241, 254, 765, 1023
BstPI GGTNACC 1 cut(s) 902
BstSCI CCNGG 4 cut(s) 239, 252, 763, 1021
BstUI CGCG 2 cut(s) 227, 326
BstV1I GCAGC 1 cut(s) 30
BstV2I GAAGAC 1 cut(s) 34
Bsu15I ATCGAT 1 cut(s) 720
Bsu36I CCTNAGG 1 cut(s) 706
BsuRI GGCC 4 cut(s) 400, 412, 422, 687
BsuTUI ATCGAT 1 cut(s) 720
BtgZI GCGATG 1 cut(s) 419
BtsCI GGATG 1 cut(s) 748
BtsI GCAGTG 3 cut(s) 1002, 1062, 1105
BtsIMutI CAGTG 3 cut(s) 1002, 1062, 1105
Cac8I GCNNGC 2 cut(s) 402, 1196
CaiI CAGNNNCTG 2 cut(s) 937, 1104
CfoI GCGC 1 cut(s) 229
Cfr10I RCCGGY 3 cut(s) 142, 400, 655
Cfr13I GGNCC 1 cut(s) 421
ClaI ATCGAT 1 cut(s) 720
Csp6I GTAC 4 cut(s) 307, 445, 621, 807
CspAI ACCGGT 1 cut(s) 655
CviAII CATG 1 cut(s) 1045
CviQI GTAC 4 cut(s) 307, 445, 621, 807
DdeI CTNAG 3 cut(s) 63, 706, 991
DpnI GATC 3 cut(s) 537, 747, 872
DpnII GATC 3 cut(s) 535, 745, 870
EaeI YGGCCR 1 cut(s) 398
Eam1104I CTCTTC 3 cut(s) 181, 270, 603
EarI CTCTTC 3 cut(s) 181, 270, 603
EciI GGCGGA 5 cut(s) 111, 175, 199, 261, 426
Eco130I CCWWGG 1 cut(s) 603
Eco24I GRGCYC 1 cut(s) 247
Eco31I GGTCTC 1 cut(s) 553
Eco57I CTGAAG 1 cut(s) 663
Eco81I CCTNAGG 1 cut(s) 706
Eco91I GGTNACC 1 cut(s) 902
EcoO65I GGTNACC 1 cut(s) 902
EcoRII CCWGG 4 cut(s) 239, 252, 763, 1021
EcoT14I CCWWGG 1 cut(s) 603
EcoT22I ATGCAT 2 cut(s) 856, 1046
EcoT38I GRGCYC 1 cut(s) 247
ErhI CCWWGG 1 cut(s) 603
FaeI CATG 1 cut(s) 1048
FaqI GGGAC 1 cut(s) 650
FatI CATG 1 cut(s) 1044
FauI CCCGC 2 cut(s) 60, 144
FauNDI CATATG 1 cut(s) 1086
FbaI TGATCA 1 cut(s) 535
FblI GTMKAC 1 cut(s) 1081
FokI GGATG 1 cut(s) 755
FriOI GRGCYC 1 cut(s) 247
FspBI CTAG 1 cut(s) 887
GlaI GCGC 1 cut(s) 228
GsuI CTGGAG 2 cut(s) 533, 786
HaeIII GGCC 4 cut(s) 400, 412, 422, 687
HapII CCGG 4 cut(s) 143, 401, 416, 656
HhaI GCGC 1 cut(s) 229
Hin1I GRCGYC 1 cut(s) 483
Hin1II CATG 1 cut(s) 1048
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HincII GTYRAC 2 cut(s) 487, 1082
HindII GTYRAC 2 cut(s) 487, 1082
HinfI GANTC 3 cut(s) 328, 818, 1123
HpaII CCGG 4 cut(s) 143, 401, 416, 656
HphI GGTGA 5 cut(s) 157, 484, 753, 848, 914
Hpy166II GTNNAC 2 cut(s) 487, 1082
Hpy188I TCNGA 3 cut(s) 103, 333, 675
Hpy188III TCNNGA 2 cut(s) 641, 708
Hpy8I GTNNAC 2 cut(s) 487, 1082
HpyAV CCTTC 4 cut(s) 463, 995, 1021, 1051
HpyCH4III ACNGT 4 cut(s) 302, 380, 939, 1106
HpyCH4IV ACGT 7 cut(s) 31, 447, 483, 489, 503, 805, 967
HpyCH4V TGCA 8 cut(s) 318, 661, 854, 868, 986, 1044, 1098, 1109
HpyF10VI GCNNNNNNNGC 7 cut(s) 64, 136, 280, 286, 406, 992, 1146
HpyF3I CTNAG 3 cut(s) 63, 706, 991
HpySE526I ACGT 7 cut(s) 31, 447, 483, 489, 503, 805, 967
Hsp92I GRCGYC 1 cut(s) 483
Hsp92II CATG 1 cut(s) 1048
HspAI GCGC 1 cut(s) 227
KroI GCCGGC 1 cut(s) 400
KroNI GCCGGC 1 cut(s) 402
Ksp22I TGATCA 1 cut(s) 535
Kzo9I GATC 3 cut(s) 535, 745, 870
LmnI GCTCC 3 cut(s) 250, 451, 579
Lsp1109I GCAGC 1 cut(s) 30
LweI GCATC 5 cut(s) 396, 553, 726, 841, 863
MaeI CTAG 1 cut(s) 887
MaeII ACGT 7 cut(s) 31, 447, 483, 489, 503, 805, 967
MaeIII GTNAC 5 cut(s) 32, 145, 350, 902, 1100
MalI GATC 3 cut(s) 537, 747, 872
MboI GATC 3 cut(s) 535, 745, 870
MhlI GDGCHC 2 cut(s) 247, 456
MluCI AATT 7 cut(s) 205, 310, 361, 692, 924, 981, 1115
MmeI TCCRAC 2 cut(s) 126, 720
Mph1103I ATGCAT 2 cut(s) 856, 1046
MroNI GCCGGC 1 cut(s) 400
MseI TTAA 1 cut(s) 927
MslI CAYNNNNRTG 2 cut(s) 459, 834
MspI CCGG 4 cut(s) 143, 401, 416, 656
MspR9I CCNGG 4 cut(s) 241, 254, 765, 1023
MvaI CCWGG 4 cut(s) 241, 254, 765, 1023
MvnI CGCG 2 cut(s) 227, 326
MwoI GCNNNNNNNGC 7 cut(s) 64, 136, 280, 286, 406, 992, 1146
NaeI GCCGGC 1 cut(s) 402
NdeI CATATG 1 cut(s) 1086
NdeII GATC 3 cut(s) 535, 745, 870
NgoMIV GCCGGC 1 cut(s) 400
NlaIII CATG 1 cut(s) 1048
NlaIV GGNNCC 2 cut(s) 246, 423
NmuCI GTSAC 3 cut(s) 145, 902, 1100
NsiI ATGCAT 2 cut(s) 856, 1046
OliI CACNNNNGTG 1 cut(s) 459
PasI CCCWGGG 2 cut(s) 240, 1022
PdiI GCCGGC 1 cut(s) 402
PfeI GAWTC 3 cut(s) 328, 818, 1123
Pfl23II CGTACG 2 cut(s) 444, 806
PinAI ACCGGT 1 cut(s) 655
Ppu21I YACGTR 3 cut(s) 448, 806, 968
Psp6I CCWGG 4 cut(s) 239, 252, 763, 1021
PspEI GGTNACC 1 cut(s) 902
PspGI CCWGG 4 cut(s) 239, 252, 763, 1021
PspLI CGTACG 2 cut(s) 444, 806
PspN4I GGNNCC 2 cut(s) 246, 423
PspPI GGNCC 1 cut(s) 421
PstNI CAGNNNCTG 2 cut(s) 937, 1104
RsaI GTAC 4 cut(s) 308, 446, 622, 808
RsaNI GTAC 4 cut(s) 307, 445, 621, 807
RseI CAYNNNNRTG 2 cut(s) 459, 834
SalI GTCGAC 1 cut(s) 1080
SaqAI TTAA 1 cut(s) 927
Sau3AI GATC 3 cut(s) 535, 745, 870
Sau96I GGNCC 1 cut(s) 421
ScrFI CCNGG 4 cut(s) 241, 254, 765, 1023
SduI GDGCHC 2 cut(s) 247, 456
SfaNI GCATC 5 cut(s) 396, 553, 726, 841, 863
SgrAI CRCCGGYG 2 cut(s) 142, 655
SmiMI CAYNNNNRTG 2 cut(s) 459, 834
SmlI CTYRAG 1 cut(s) 876
SmoI CTYRAG 1 cut(s) 876
Sse9I AATT 7 cut(s) 205, 310, 361, 692, 924, 981, 1115
SspMI CTAG 1 cut(s) 887
StyD4I CCNGG 4 cut(s) 239, 252, 763, 1021
StyI CCWWGG 1 cut(s) 603
TaaI ACNGT 4 cut(s) 302, 380, 939, 1106
TaiI ACGT 7 cut(s) 34, 450, 486, 492, 506, 808, 970
TaqI TCGA 5 cut(s) 561, 720, 735, 825, 1081
TaqII GACCGA 1 cut(s) 1064
TasI AATT 7 cut(s) 205, 310, 361, 692, 924, 981, 1115
TatI WGTACW 2 cut(s) 306, 620
TfiI GAWTC 3 cut(s) 328, 818, 1123
Tru1I TTAA 1 cut(s) 927
Tru9I TTAA 1 cut(s) 927
TscAI CASTG 3 cut(s) 1002, 1069, 1105
TseFI GTSAC 3 cut(s) 145, 902, 1100
TseI GCWGC 1 cut(s) 18
Tsp45I GTSAC 3 cut(s) 145, 902, 1100
TspDTI ATGAA 3 cut(s) 963, 975, 1199
TspRI CASTG 3 cut(s) 1002, 1069, 1105
XapI RAATTY 1 cut(s) 692
XmiI GTMKAC 1 cut(s) 1081
XspI CTAG 1 cut(s) 887
ZraI GACGTC 1 cut(s) 484
Zsp2I ATGCAT 2 cut(s) 856, 1046
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.