RLG00000007877

E3 ubiquitin-protein ligase LUL4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0013528
Physical Location & Seq
Forward (+)
22325599 .. 22329319
3721 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007877

Sequence Viewer

Length: 1212 bp
ATGGGGCTTTCTTTAAGCAGCAACCGAAGACGTAACAACTACTACCACCAACACCCACCACCGCCTCAGCCCCCCTACCTCTCCAATCCTCACTACTACCCCTCCGACCCACCCTCTTTCTCTCCGCCGCCGCCACCCCCGCCGCCTCCTCCGCCGCCGCTGACTTCTTTCTCTTCCTCCTCCTCCTCTTCTTCTTCCGCCAACTACCCAGAACCCAATTCCGCCACCCCTTACGCAGCGCCGCCGCCCAGGGCTCCATACCAGGCCTACCCTCTTCCGCCGCCGCCGCCGCAGTCGCATTACTGCTATGGTCAGTACAATTCTTGCAGCCACGCGAATCTGATGATGGGTCGGTTCAGTTACAACCACAATTACCAGCCTTACTATGGTAATCAGGCGAGTGGGTGGCCTGCGATGCGGCCTCCGGTGGCCCCCCTTTATCCTCCTCCGCCGTACGTGGAGCACCAGAGTGCCAAGAAGGTGAAGAATGACGTCAACGTGCGTAAGGACACGTTGAGGCTTGAGATTGATGAGCAGAACCCTGATCAGCATTTGGTCTCGTTCGTTTTCGATGCCTTGTATGATGGGAGCATTACTATTCTCTACTTTGCCAAGGAAGAGGCAGATTGTTCATTTGTTCCGCTATTTCCTGAAGCATTTACGCCGGTACAAGTCCCTTTTCAGAAAGGAGTAGGCCAGAAATTTTGTCAGCCCTCAGGAACAGGCATCGATTTAGGCTTCTTCGAGTTGGATGATCTGTCAAAACCCTCACCTGGAGAAGATGTATTCCCACTTGTAATATCTGCGGAAACACATACGCCGCCTGATTCAATCGACCATATTGGTGAGCCTGTCCAAGATACATCTCCTCGTAAGCAGATCACTCAAGCTGTGCTAGAAAAGAATAATGGTGACCCTTTCCAAGTGAAAGTAATTAAGCAGATACTGTGGATTGATGAAGTTCGCTATGAACTACGTGAGATATATGGAATTGCAACCTCAGCAGTGGAAGGCTTTGATGACAATGACCCTGGGAAGGAGTGTGTAATATGCATGACCGAACCGAAGGACACTGCTGTATTACCTTGTCGACATATGTGTATGTGCAGTGACTGTGCAAAAGAATTGAGGATTCAATCCAATAAATGCCCCATTTGCCGACAGCCCATTGAAGAACTTATAGAGATAAAGATGAATAAAAGCCAGCAATGA

Protein Analysis

404

Amino Acids

45.06

Weight (kDa)

5.39

Isoelectric Point (pI)

70.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNF157-like_N PF26192 165 - 325 1.9e-70 RNF157-like N-terminal domain
zf-C3HC4_3 PF13920 346 - 392 8.7e-18 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 347 - 387 1.6e-07 Ring finger domain
Prok-RING_4 PF14447 348 - 391 2.3e-06 Prokaryotic RING finger family 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06140
fragaria_vesca FvH4_4g14510
malus_domestica MD13G1183800.v1.1 MD16G1184200.v1.1
prunus_persica Prupe.1G151600_v2.0.a1 Prupe.1G151600_v2.0.a1
pyrus_communis pycom13g15860 pycom16g15470
rosa_chinensis RchiOBHm_Chr4g0418321
rosa_laevigata RLG00000007877
rosa_multiflora Rmu_ssc0000153.1_g000004
rosa_roxburghii Rroxscaffold_5G00361510
rosa_rugosa Rorug04G0152200
rosa_samantha Rh4AG213700 Rh4BG216700 Rh4CG225300 Rh4DG212200
rosa_wichuraiana Rw4G018150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 495
AccI GTMKAC 1 cut(s) 1090
AccII CGCG 1 cut(s) 335
AcsI RAATTY 1 cut(s) 701
AcuI CTGAAG 1 cut(s) 672
AcyI GRCGYC 1 cut(s) 492
AfaI GTAC 3 cut(s) 317, 455, 669
AfiI CCNNNNNNNGG 3 cut(s) 386, 773, 1036
AflIII ACRYGT 1 cut(s) 510
AgsI TTSAA 3 cut(s) 831, 1136, 1172
AjnI CCWGG 4 cut(s) 248, 261, 772, 1030
AleI CACNNNNGTG 1 cut(s) 468
AluBI AGCT 1 cut(s) 890
AluI AGCT 1 cut(s) 890
Alw21I GWGCWC 1 cut(s) 465
Alw26I GTCTC 1 cut(s) 562
AlwNI CAGNNNCTG 2 cut(s) 946, 1113
AoxI GGCC 5 cut(s) 264, 407, 419, 429, 694
ApeKI GCWGC 3 cut(s) 18, 236, 327
ApoI RAATTY 1 cut(s) 701
AspLEI GCGC 1 cut(s) 241
AspS9I GGNCC 1 cut(s) 430
AsuHPI GGTGA 4 cut(s) 493, 762, 857, 923
AxyI CCTNAGG 1 cut(s) 715
BanII GRGCYC 1 cut(s) 256
BbsI GAAGAC 1 cut(s) 34
Bbv12I GWGCWC 1 cut(s) 465
BbvCI CCTCAGC 2 cut(s) 66, 1000
BbvI GCAGC 3 cut(s) 30, 248, 339
BccI CCATC 2 cut(s) 340, 578
BceAI ACGGC 1 cut(s) 436
BciT130I CCWGG 4 cut(s) 250, 263, 774, 1032
BclI TGATCA 1 cut(s) 544
BcoDI GTCTC 1 cut(s) 562
BfaI CTAG 1 cut(s) 896
BfoI RGCGCY 1 cut(s) 242
Bme1390I CCNGG 4 cut(s) 250, 263, 774, 1032
BmgT120I GGNCC 1 cut(s) 430
BmiI GGNNCC 2 cut(s) 255, 432
BmrFI CCNGG 4 cut(s) 250, 263, 774, 1032
BmsI GCATC 3 cut(s) 405, 562, 735
BpiI GAAGAC 1 cut(s) 34
BpmI CTGGAG 1 cut(s) 795
Bpu10I CCTNAGC 2 cut(s) 66, 1000
BpuEI CTTGAG 2 cut(s) 542, 870
Bsa29I ATCGAT 1 cut(s) 729
BsaAI YACGTR 2 cut(s) 457, 977
BsaHI GRCGYC 1 cut(s) 492
BsaI GGTCTC 1 cut(s) 562
BsaJI CCNNGG 5 cut(s) 248, 249, 612, 1030, 1031
BsaWI WCCGGW 1 cut(s) 424
BsaXI ACNNNNNCTCC 4 cut(s) 86, 116, 768, 798
Bsc4I CCNNNNNNNGG 3 cut(s) 386, 773, 1036
Bse118I RCCGGY 1 cut(s) 664
Bse21I CCTNAGG 1 cut(s) 715
BseBI CCWGG 4 cut(s) 250, 263, 774, 1032
BseCI ATCGAT 1 cut(s) 729
BseDI CCNNGG 5 cut(s) 248, 249, 612, 1030, 1031
BseGI GGATG 1 cut(s) 757
BseLI CCNNNNNNNGG 3 cut(s) 386, 773, 1036
BseMII CTCAG 3 cut(s) 80, 729, 1014
BseRI GAGGAG 6 cut(s) 138, 169, 172, 175, 435, 858
BseXI GCAGC 3 cut(s) 30, 248, 339
BsgI GTGCAG 1 cut(s) 1126
Bsh1236I CGCG 1 cut(s) 335
BshFI GGCC 5 cut(s) 266, 409, 421, 431, 696
BshVI ATCGAT 1 cut(s) 729
BsiHKAI GWGCWC 1 cut(s) 465
BsiSI CCGG 2 cut(s) 425, 665
BsiWI CGTACG 1 cut(s) 453
BslFI GGGAC 1 cut(s) 659
BslI CCNNNNNNNGG 3 cut(s) 386, 773, 1036
BsmAI GTCTC 1 cut(s) 562
BsmFI GGGAC 1 cut(s) 659
BsnI GGCC 5 cut(s) 266, 409, 421, 431, 696
Bso31I GGTCTC 1 cut(s) 562
Bsp1286I GDGCHC 2 cut(s) 256, 465
Bsp143I GATC 3 cut(s) 544, 754, 879
BspANI GGCC 5 cut(s) 266, 409, 421, 431, 696
BspCNI CTCAG 3 cut(s) 79, 728, 1013
BspDI ATCGAT 1 cut(s) 729
BspFNI CGCG 1 cut(s) 335
BspLI GGNNCC 2 cut(s) 255, 432
BspTNI GGTCTC 1 cut(s) 562
BsrFI RCCGGY 1 cut(s) 664
BssAI RCCGGY 1 cut(s) 664
BssECI CCNNGG 5 cut(s) 248, 249, 612, 1030, 1031
BssMI GATC 3 cut(s) 544, 754, 879
BssNI GRCGYC 1 cut(s) 492
BssT1I CCWWGG 1 cut(s) 612
Bst2UI CCWGG 4 cut(s) 250, 263, 774, 1032
Bst4CI ACNGT 2 cut(s) 948, 1115
Bst6I CTCTTC 4 cut(s) 178, 193, 279, 612
BstACI GRCGYC 1 cut(s) 492
BstBAI YACGTR 2 cut(s) 457, 977
BstC8I GCNNGC 2 cut(s) 411, 1205
BstDEI CTNAG 3 cut(s) 66, 715, 1000
BstEII GGTNACC 1 cut(s) 911
BstF5I GGATG 1 cut(s) 757
BstFNI CGCG 1 cut(s) 335
BstH2I RGCGCY 1 cut(s) 242
BstHHI GCGC 1 cut(s) 241
BstKTI GATC 3 cut(s) 547, 757, 882
BstMAI GTCTC 1 cut(s) 562
BstMBI GATC 3 cut(s) 544, 754, 879
BstMWI GCNNNNNNNGC 8 cut(s) 139, 151, 286, 289, 295, 415, 1001, 1155
BstNI CCWGG 4 cut(s) 250, 263, 774, 1032
BstPI GGTNACC 1 cut(s) 911
BstSCI CCNGG 4 cut(s) 248, 261, 772, 1030
BstUI CGCG 1 cut(s) 335
BstV1I GCAGC 3 cut(s) 30, 248, 339
BstV2I GAAGAC 1 cut(s) 34
Bsu15I ATCGAT 1 cut(s) 729
Bsu36I CCTNAGG 1 cut(s) 715
BsuRI GGCC 5 cut(s) 266, 409, 421, 431, 696
BsuTUI ATCGAT 1 cut(s) 729
BtgZI GCGATG 1 cut(s) 428
BtsCI GGATG 1 cut(s) 757
BtsI GCAGTG 3 cut(s) 1011, 1071, 1114
BtsIMutI CAGTG 3 cut(s) 1011, 1071, 1114
Cac8I GCNNGC 2 cut(s) 411, 1205
CaiI CAGNNNCTG 2 cut(s) 946, 1113
CfoI GCGC 1 cut(s) 241
Cfr10I RCCGGY 1 cut(s) 664
Cfr13I GGNCC 1 cut(s) 430
ClaI ATCGAT 1 cut(s) 729
Csp6I GTAC 3 cut(s) 316, 454, 668
CviAII CATG 1 cut(s) 1054
CviQI GTAC 3 cut(s) 316, 454, 668
DdeI CTNAG 3 cut(s) 66, 715, 1000
DpnI GATC 3 cut(s) 546, 756, 881
DpnII GATC 3 cut(s) 544, 754, 879
Eam1104I CTCTTC 4 cut(s) 178, 193, 279, 612
EarI CTCTTC 4 cut(s) 178, 193, 279, 612
EciI GGCGGA 6 cut(s) 114, 141, 187, 211, 267, 438
Eco130I CCWWGG 1 cut(s) 612
Eco147I AGGCCT 1 cut(s) 266
Eco24I GRGCYC 1 cut(s) 256
Eco31I GGTCTC 1 cut(s) 562
Eco57I CTGAAG 1 cut(s) 672
Eco81I CCTNAGG 1 cut(s) 715
Eco91I GGTNACC 1 cut(s) 911
EcoO65I GGTNACC 1 cut(s) 911
EcoRII CCWGG 4 cut(s) 248, 261, 772, 1030
EcoT14I CCWWGG 1 cut(s) 612
EcoT22I ATGCAT 1 cut(s) 1055
EcoT38I GRGCYC 1 cut(s) 256
ErhI CCWWGG 1 cut(s) 612
FaeI CATG 1 cut(s) 1057
FaqI GGGAC 1 cut(s) 659
FatI CATG 1 cut(s) 1053
FauI CCCGC 1 cut(s) 147
FauNDI CATATG 1 cut(s) 1095
FbaI TGATCA 1 cut(s) 544
FblI GTMKAC 1 cut(s) 1090
FokI GGATG 1 cut(s) 764
FriOI GRGCYC 1 cut(s) 256
FspBI CTAG 1 cut(s) 896
GlaI GCGC 1 cut(s) 240
GsuI CTGGAG 1 cut(s) 795
HaeII RGCGCY 1 cut(s) 242
HaeIII GGCC 5 cut(s) 266, 409, 421, 431, 696
HapII CCGG 2 cut(s) 425, 665
HhaI GCGC 1 cut(s) 241
Hin1I GRCGYC 1 cut(s) 492
Hin1II CATG 1 cut(s) 1057
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HincII GTYRAC 2 cut(s) 496, 1091
HindII GTYRAC 2 cut(s) 496, 1091
HinfI GANTC 3 cut(s) 337, 827, 1132
HpaII CCGG 2 cut(s) 425, 665
HphI GGTGA 4 cut(s) 493, 762, 857, 923
Hpy166II GTNNAC 2 cut(s) 496, 1091
Hpy188I TCNGA 3 cut(s) 106, 342, 684
Hpy188III TCNNGA 2 cut(s) 650, 717
Hpy8I GTNNAC 2 cut(s) 496, 1091
HpyAV CCTTC 4 cut(s) 472, 1004, 1030, 1060
HpyCH4III ACNGT 2 cut(s) 948, 1115
HpyCH4IV ACGT 6 cut(s) 31, 456, 492, 498, 512, 976
HpyCH4V TGCA 5 cut(s) 327, 995, 1053, 1107, 1118
HpyF10VI GCNNNNNNNGC 8 cut(s) 139, 151, 286, 289, 295, 415, 1001, 1155
HpyF3I CTNAG 3 cut(s) 66, 715, 1000
HpySE526I ACGT 6 cut(s) 31, 456, 492, 498, 512, 976
Hsp92I GRCGYC 1 cut(s) 492
Hsp92II CATG 1 cut(s) 1057
HspAI GCGC 1 cut(s) 239
Ksp22I TGATCA 1 cut(s) 544
Kzo9I GATC 3 cut(s) 544, 754, 879
LmnI GCTCC 3 cut(s) 259, 460, 588
Lsp1109I GCAGC 3 cut(s) 30, 248, 339
LweI GCATC 3 cut(s) 405, 562, 735
MaeI CTAG 1 cut(s) 896
MaeII ACGT 6 cut(s) 31, 456, 492, 498, 512, 976
MaeIII GTNAC 4 cut(s) 32, 359, 911, 1109
MalI GATC 3 cut(s) 546, 756, 881
MboI GATC 3 cut(s) 544, 754, 879
MhlI GDGCHC 2 cut(s) 256, 465
MluCI AATT 7 cut(s) 217, 319, 370, 701, 933, 990, 1124
MmeI TCCRAC 2 cut(s) 129, 729
Mph1103I ATGCAT 1 cut(s) 1055
MseI TTAA 2 cut(s) 14, 936
MslI CAYNNNNRTG 2 cut(s) 468, 843
MspA1I CMGCKG 1 cut(s) 160
MspI CCGG 2 cut(s) 425, 665
MspR9I CCNGG 4 cut(s) 250, 263, 774, 1032
MvaI CCWGG 4 cut(s) 250, 263, 774, 1032
MvnI CGCG 1 cut(s) 335
MwoI GCNNNNNNNGC 8 cut(s) 139, 151, 286, 289, 295, 415, 1001, 1155
NdeI CATATG 1 cut(s) 1095
NdeII GATC 3 cut(s) 544, 754, 879
NlaIII CATG 1 cut(s) 1057
NlaIV GGNNCC 2 cut(s) 255, 432
NmuCI GTSAC 2 cut(s) 911, 1109
NsiI ATGCAT 1 cut(s) 1055
OliI CACNNNNGTG 1 cut(s) 468
PasI CCCWGGG 2 cut(s) 249, 1031
PceI AGGCCT 1 cut(s) 266
PfeI GAWTC 3 cut(s) 337, 827, 1132
Pfl23II CGTACG 1 cut(s) 453
Ppu21I YACGTR 2 cut(s) 457, 977
Psp6I CCWGG 4 cut(s) 248, 261, 772, 1030
PspEI GGTNACC 1 cut(s) 911
PspGI CCWGG 4 cut(s) 248, 261, 772, 1030
PspLI CGTACG 1 cut(s) 453
PspN4I GGNNCC 2 cut(s) 255, 432
PspPI GGNCC 1 cut(s) 430
PstNI CAGNNNCTG 2 cut(s) 946, 1113
RsaI GTAC 3 cut(s) 317, 455, 669
RsaNI GTAC 3 cut(s) 316, 454, 668
RseI CAYNNNNRTG 2 cut(s) 468, 843
SalI GTCGAC 1 cut(s) 1089
SaqAI TTAA 2 cut(s) 14, 936
Sau3AI GATC 3 cut(s) 544, 754, 879
Sau96I GGNCC 1 cut(s) 430
ScrFI CCNGG 4 cut(s) 250, 263, 774, 1032
SduI GDGCHC 2 cut(s) 256, 465
SfaNI GCATC 3 cut(s) 405, 562, 735
SmiMI CAYNNNNRTG 2 cut(s) 468, 843
SmlI CTYRAG 2 cut(s) 521, 885
SmoI CTYRAG 2 cut(s) 521, 885
Sse9I AATT 7 cut(s) 217, 319, 370, 701, 933, 990, 1124
SseBI AGGCCT 1 cut(s) 266
SspMI CTAG 1 cut(s) 896
StuI AGGCCT 1 cut(s) 266
StyD4I CCNGG 4 cut(s) 248, 261, 772, 1030
StyI CCWWGG 1 cut(s) 612
TaaI ACNGT 2 cut(s) 948, 1115
TaiI ACGT 6 cut(s) 34, 459, 495, 501, 515, 979
TaqI TCGA 5 cut(s) 570, 729, 744, 834, 1090
TaqII GACCGA 1 cut(s) 1073
TasI AATT 7 cut(s) 217, 319, 370, 701, 933, 990, 1124
TatI WGTACW 1 cut(s) 315
TfiI GAWTC 3 cut(s) 337, 827, 1132
Tru1I TTAA 2 cut(s) 14, 936
Tru9I TTAA 2 cut(s) 14, 936
TscAI CASTG 3 cut(s) 1011, 1078, 1114
TseFI GTSAC 2 cut(s) 911, 1109
TseI GCWGC 3 cut(s) 18, 236, 327
Tsp45I GTSAC 2 cut(s) 911, 1109
TspDTI ATGAA 4 cut(s) 621, 972, 984, 1208
TspRI CASTG 3 cut(s) 1011, 1078, 1114
XapI RAATTY 1 cut(s) 701
XcmI CCANNNNNNNNNTGG 1 cut(s) 383
XmiI GTMKAC 1 cut(s) 1090
XspI CTAG 1 cut(s) 896
ZraI GACGTC 1 cut(s) 493
Zsp2I ATGCAT 1 cut(s) 1055
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.