Rh4BG216700

E3 ubiquitin-protein ligase LUL4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0013528
Physical Location & Seq
Forward (+)
37719543 .. 37725050
5508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG216700.1

Sequence Viewer

Length: 1152 bp
ATGGGGCTTTCTTTCAGCAGCAACCGAAGACGTAACAACTACTACCAACACCCGCCGCCGCCTCAGCCCCTCTACCTCTCCAATCCTCACTACTACCCCACCGACCCACCCTCTTTCTCTCCGCCGCCGCCGCCGCCACCTCCTCCGCCGCCGGTGACTTCTTTTTCTTCCTCCTCCTCCTCCTCTTCTTCTTCCGCCACCTACCCAGAACCCAATTCCGCCACCCCTTACTCCGCGCCGCCGCCGCCCAGGGCTCCATACCAGGCCTACCCTCTTCCGCCGCCGCCGCCGCAGTCGCATTACTGCTACGGTCAGTACAATTCTTGCAACCACGCGAATCCGATGATGGGTCGGTTCAGTTACAACCACAATTACCAGCCTTACTATGGTAATCAGGCTAGTGGGTGGCCGGCGATGCGGCCTCCGGTGGCCCCCCTTTATCCTCCGCCGCCGTACGTGGAGCACCAGAGTGCCAAGAAGGTGAAGAATGACGTCAACGTGCATAAGGACACGTTGAGGCTGGAGATTGATGAGCAGAACCCTGATCAGCATTTGGTCTCGTTCGTTTTCGATGCCTTGTATGATGGGAGCATTACTATTCTCTACTTTGCCAAGGAAGAGGCAGATTGTACATTTGTTCCACTATTTCCTGAAGCATTTACACCGGTGCAAGTCCCTTTTCAGAAAGGAGTAGGCCAGAAATTTTGTCAGCCCTCAGGAACAGGCATCGATTTAGGCTTCTTCGAGTTGGATGATCTGTCAAAACCCTCACCTGGAGAAGATGTATTCCCACTTGTAATATCTGCGGAAACACGTACGCCGCCTGATTCAATCGACCATATTGGTGAGCCTGTCCAAGATGCATCTCCTCGTATGCAGATCACTCAAGCTGTGCTAGAAAAAAATAATGGTGACCCTTTCCAAGTGAAAGTAATTAAGCAGATACTGTGGATTGATGAAGTTCGCTATGAACTACGTGAGATATATGGAATTGCAACCTCAGCAGTGGAAGGCTTTGATGACAATGACCCTGGGAAGGAGTGTGTAATATGCATGACCGAACCGAAGGACACTGCTGTATTACCTTGTCGACATATGGTGAGAATTCATCTAATACTATATAGTGCTATTAGGAGATCAAAACAAATTTAG

Protein Analysis

383

Amino Acids

42.82

Weight (kDa)

5.55

Isoelectric Point (pI)

67.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNF157-like_N PF26192 165 - 325 4.9e-71 RNF157-like N-terminal domain
zf-C3HC4_3 PF13920 346 - 367 8.2e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013528)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06140
fragaria_vesca FvH4_4g14510
malus_domestica MD13G1183800.v1.1 MD16G1184200.v1.1
prunus_persica Prupe.1G151600_v2.0.a1 Prupe.1G151600_v2.0.a1
pyrus_communis pycom13g15860 pycom16g15470
rosa_chinensis RchiOBHm_Chr4g0418321
rosa_laevigata RLG00000007877
rosa_multiflora Rmu_ssc0000153.1_g000004
rosa_roxburghii Rroxscaffold_5G00361510
rosa_rugosa Rorug04G0152200
rosa_samantha Rh4AG213700 Rh4BG216700 Rh4CG225300 Rh4DG212200
rosa_wichuraiana Rw4G018150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 495
AccI GTMKAC 1 cut(s) 1090
AccII CGCG 2 cut(s) 236, 335
AcoI YGGCCR 1 cut(s) 407
AcsI RAATTY 3 cut(s) 701, 1104, 1146
AcuI CTGAAG 1 cut(s) 672
AcyI GRCGYC 1 cut(s) 492
AfaI GTAC 4 cut(s) 317, 455, 631, 817
AfiI CCNNNNNNNGG 4 cut(s) 347, 386, 773, 1036
AflIII ACRYGT 2 cut(s) 510, 812
AgeI ACCGGT 1 cut(s) 664
AgsI TTSAA 1 cut(s) 831
AjnI CCWGG 4 cut(s) 248, 261, 772, 1030
AleI CACNNNNGTG 1 cut(s) 468
AluBI AGCT 1 cut(s) 890
AluI AGCT 1 cut(s) 890
Alw21I GWGCWC 1 cut(s) 465
Alw26I GTCTC 1 cut(s) 562
AlwNI CAGNNNCTG 1 cut(s) 946
AoxI GGCC 5 cut(s) 264, 407, 419, 429, 694
ApeKI GCWGC 1 cut(s) 18
ApoI RAATTY 3 cut(s) 701, 1104, 1146
AsiGI ACCGGT 1 cut(s) 664
AspLEI GCGC 1 cut(s) 238
AspS9I GGNCC 1 cut(s) 430
AsuHPI GGTGA 6 cut(s) 166, 493, 762, 857, 923, 1111
AxyI CCTNAGG 1 cut(s) 715
BanII GRGCYC 1 cut(s) 256
BbsI GAAGAC 1 cut(s) 34
Bbv12I GWGCWC 1 cut(s) 465
BbvCI CCTCAGC 2 cut(s) 63, 1000
BbvI GCAGC 1 cut(s) 30
BccI CCATC 2 cut(s) 340, 578
BceAI ACGGC 1 cut(s) 436
BciT130I CCWGG 4 cut(s) 250, 263, 774, 1032
BclI TGATCA 1 cut(s) 544
BcoDI GTCTC 1 cut(s) 562
BfaI CTAG 2 cut(s) 399, 896
Bme1390I CCNGG 4 cut(s) 250, 263, 774, 1032
BmgT120I GGNCC 1 cut(s) 430
BmiI GGNNCC 2 cut(s) 255, 432
BmrFI CCNGG 4 cut(s) 250, 263, 774, 1032
BmsI GCATC 5 cut(s) 405, 562, 735, 850, 872
BpiI GAAGAC 1 cut(s) 34
BpmI CTGGAG 2 cut(s) 542, 795
Bpu10I CCTNAGC 2 cut(s) 63, 1000
BpuEI CTTGAG 1 cut(s) 870
Bsa29I ATCGAT 1 cut(s) 729
BsaAI YACGTR 3 cut(s) 457, 815, 977
BsaHI GRCGYC 1 cut(s) 492
BsaI GGTCTC 1 cut(s) 562
BsaJI CCNNGG 5 cut(s) 248, 249, 612, 1030, 1031
BsaWI WCCGGW 2 cut(s) 424, 664
BsaXI ACNNNNNCTCC 2 cut(s) 768, 798
Bsc4I CCNNNNNNNGG 4 cut(s) 347, 386, 773, 1036
Bse118I RCCGGY 3 cut(s) 151, 409, 664
Bse21I CCTNAGG 1 cut(s) 715
BseBI CCWGG 4 cut(s) 250, 263, 774, 1032
BseCI ATCGAT 1 cut(s) 729
BseDI CCNNGG 5 cut(s) 248, 249, 612, 1030, 1031
BseGI GGATG 1 cut(s) 757
BseLI CCNNNNNNNGG 4 cut(s) 347, 386, 773, 1036
BseMII CTCAG 3 cut(s) 77, 729, 1014
BseRI GAGGAG 6 cut(s) 132, 163, 166, 169, 172, 858
BseXI GCAGC 1 cut(s) 30
Bsh1236I CGCG 2 cut(s) 236, 335
BshFI GGCC 5 cut(s) 266, 409, 421, 431, 696
BshTI ACCGGT 1 cut(s) 664
BshVI ATCGAT 1 cut(s) 729
BsiHKAI GWGCWC 1 cut(s) 465
BsiSI CCGG 4 cut(s) 152, 410, 425, 665
BsiWI CGTACG 2 cut(s) 453, 815
BslFI GGGAC 1 cut(s) 659
BslI CCNNNNNNNGG 4 cut(s) 347, 386, 773, 1036
BsmAI GTCTC 1 cut(s) 562
BsmFI GGGAC 1 cut(s) 659
BsnI GGCC 5 cut(s) 266, 409, 421, 431, 696
Bso31I GGTCTC 1 cut(s) 562
Bsp1286I GDGCHC 2 cut(s) 256, 465
Bsp1407I TGTACA 1 cut(s) 629
Bsp143I GATC 4 cut(s) 544, 754, 879, 1136
BspANI GGCC 5 cut(s) 266, 409, 421, 431, 696
BspCNI CTCAG 3 cut(s) 76, 728, 1013
BspDI ATCGAT 1 cut(s) 729
BspFNI CGCG 2 cut(s) 236, 335
BspLI GGNNCC 2 cut(s) 255, 432
BspTNI GGTCTC 1 cut(s) 562
BsrFI RCCGGY 3 cut(s) 151, 409, 664
BsrGI TGTACA 1 cut(s) 629
BssAI RCCGGY 3 cut(s) 151, 409, 664
BssECI CCNNGG 5 cut(s) 248, 249, 612, 1030, 1031
BssMI GATC 4 cut(s) 544, 754, 879, 1136
BssNI GRCGYC 1 cut(s) 492
BssT1I CCWWGG 1 cut(s) 612
Bst2UI CCWGG 4 cut(s) 250, 263, 774, 1032
Bst4CI ACNGT 2 cut(s) 311, 948
Bst6I CTCTTC 3 cut(s) 190, 279, 612
BstACI GRCGYC 1 cut(s) 492
BstAUI TGTACA 1 cut(s) 629
BstBAI YACGTR 3 cut(s) 457, 815, 977
BstC8I GCNNGC 1 cut(s) 411
BstDEI CTNAG 3 cut(s) 63, 715, 1000
BstEII GGTNACC 1 cut(s) 911
BstF5I GGATG 1 cut(s) 757
BstFNI CGCG 2 cut(s) 236, 335
BstHHI GCGC 1 cut(s) 238
BstKTI GATC 4 cut(s) 547, 757, 882, 1139
BstMAI GTCTC 1 cut(s) 562
BstMBI GATC 4 cut(s) 544, 754, 879, 1136
BstMWI GCNNNNNNNGC 9 cut(s) 64, 130, 133, 244, 286, 289, 295, 415, 1001
BstNI CCWGG 4 cut(s) 250, 263, 774, 1032
BstPI GGTNACC 1 cut(s) 911
BstSCI CCNGG 4 cut(s) 248, 261, 772, 1030
BstUI CGCG 2 cut(s) 236, 335
BstV1I GCAGC 1 cut(s) 30
BstV2I GAAGAC 1 cut(s) 34
Bsu15I ATCGAT 1 cut(s) 729
Bsu36I CCTNAGG 1 cut(s) 715
BsuRI GGCC 5 cut(s) 266, 409, 421, 431, 696
BsuTUI ATCGAT 1 cut(s) 729
BtgZI GCGATG 1 cut(s) 428
BtsCI GGATG 1 cut(s) 757
BtsI GCAGTG 2 cut(s) 1011, 1071
BtsIMutI CAGTG 2 cut(s) 1011, 1071
Cac8I GCNNGC 1 cut(s) 411
CaiI CAGNNNCTG 1 cut(s) 946
CfoI GCGC 1 cut(s) 238
Cfr10I RCCGGY 3 cut(s) 151, 409, 664
Cfr13I GGNCC 1 cut(s) 430
ClaI ATCGAT 1 cut(s) 729
Csp6I GTAC 4 cut(s) 316, 454, 630, 816
CspAI ACCGGT 1 cut(s) 664
CviAII CATG 1 cut(s) 1054
CviQI GTAC 4 cut(s) 316, 454, 630, 816
DdeI CTNAG 3 cut(s) 63, 715, 1000
DpnI GATC 4 cut(s) 546, 756, 881, 1138
DpnII GATC 4 cut(s) 544, 754, 879, 1136
EaeI YGGCCR 1 cut(s) 407
Eam1104I CTCTTC 3 cut(s) 190, 279, 612
EarI CTCTTC 3 cut(s) 190, 279, 612
EciI GGCGGA 6 cut(s) 111, 135, 184, 208, 267, 435
Eco130I CCWWGG 1 cut(s) 612
Eco147I AGGCCT 1 cut(s) 266
Eco24I GRGCYC 1 cut(s) 256
Eco31I GGTCTC 1 cut(s) 562
Eco57I CTGAAG 1 cut(s) 672
Eco81I CCTNAGG 1 cut(s) 715
Eco91I GGTNACC 1 cut(s) 911
EcoO65I GGTNACC 1 cut(s) 911
EcoRI GAATTC 1 cut(s) 1104
EcoRII CCWGG 4 cut(s) 248, 261, 772, 1030
EcoT14I CCWWGG 1 cut(s) 612
EcoT22I ATGCAT 2 cut(s) 865, 1055
EcoT38I GRGCYC 1 cut(s) 256
ErhI CCWWGG 1 cut(s) 612
FaeI CATG 1 cut(s) 1057
FaqI GGGAC 1 cut(s) 659
FatI CATG 1 cut(s) 1053
FauI CCCGC 1 cut(s) 60
FauNDI CATATG 1 cut(s) 1095
FbaI TGATCA 1 cut(s) 544
FblI GTMKAC 1 cut(s) 1090
FokI GGATG 1 cut(s) 764
FriOI GRGCYC 1 cut(s) 256
FspBI CTAG 2 cut(s) 399, 896
GlaI GCGC 1 cut(s) 237
GsuI CTGGAG 2 cut(s) 542, 795
HaeIII GGCC 5 cut(s) 266, 409, 421, 431, 696
HapII CCGG 4 cut(s) 152, 410, 425, 665
HhaI GCGC 1 cut(s) 238
Hin1I GRCGYC 1 cut(s) 492
Hin1II CATG 1 cut(s) 1057
Hin6I GCGC 1 cut(s) 236
HinP1I GCGC 1 cut(s) 236
HincII GTYRAC 2 cut(s) 496, 1091
HindII GTYRAC 2 cut(s) 496, 1091
HinfI GANTC 2 cut(s) 337, 827
HpaII CCGG 4 cut(s) 152, 410, 425, 665
HphI GGTGA 6 cut(s) 166, 493, 762, 857, 923, 1111
Hpy166II GTNNAC 2 cut(s) 496, 1091
Hpy188I TCNGA 2 cut(s) 342, 684
Hpy188III TCNNGA 2 cut(s) 650, 717
Hpy8I GTNNAC 2 cut(s) 496, 1091
HpyAV CCTTC 4 cut(s) 472, 1004, 1030, 1060
HpyCH4III ACNGT 2 cut(s) 311, 948
HpyCH4IV ACGT 7 cut(s) 31, 456, 492, 498, 512, 814, 976
HpyCH4V TGCA 7 cut(s) 327, 502, 670, 863, 877, 995, 1053
HpyF10VI GCNNNNNNNGC 9 cut(s) 64, 130, 133, 244, 286, 289, 295, 415, 1001
HpyF3I CTNAG 3 cut(s) 63, 715, 1000
HpySE526I ACGT 7 cut(s) 31, 456, 492, 498, 512, 814, 976
Hsp92I GRCGYC 1 cut(s) 492
Hsp92II CATG 1 cut(s) 1057
HspAI GCGC 1 cut(s) 236
KroI GCCGGC 1 cut(s) 409
KroNI GCCGGC 1 cut(s) 411
Ksp22I TGATCA 1 cut(s) 544
Kzo9I GATC 4 cut(s) 544, 754, 879, 1136
LmnI GCTCC 3 cut(s) 259, 460, 588
Lsp1109I GCAGC 1 cut(s) 30
LweI GCATC 5 cut(s) 405, 562, 735, 850, 872
MaeI CTAG 2 cut(s) 399, 896
MaeII ACGT 7 cut(s) 31, 456, 492, 498, 512, 814, 976
MaeIII GTNAC 4 cut(s) 32, 154, 359, 911
MalI GATC 4 cut(s) 546, 756, 881, 1138
MboI GATC 4 cut(s) 544, 754, 879, 1136
MhlI GDGCHC 2 cut(s) 256, 465
MluCI AATT 8 cut(s) 214, 319, 370, 701, 933, 990, 1104, 1146
MmeI TCCRAC 1 cut(s) 729
Mph1103I ATGCAT 2 cut(s) 865, 1055
MroNI GCCGGC 1 cut(s) 409
MseI TTAA 1 cut(s) 936
MslI CAYNNNNRTG 2 cut(s) 468, 843
MspI CCGG 4 cut(s) 152, 410, 425, 665
MspR9I CCNGG 4 cut(s) 250, 263, 774, 1032
MvaI CCWGG 4 cut(s) 250, 263, 774, 1032
MvnI CGCG 2 cut(s) 236, 335
MwoI GCNNNNNNNGC 9 cut(s) 64, 130, 133, 244, 286, 289, 295, 415, 1001
NaeI GCCGGC 1 cut(s) 411
NdeI CATATG 1 cut(s) 1095
NdeII GATC 4 cut(s) 544, 754, 879, 1136
NgoMIV GCCGGC 1 cut(s) 409
NlaIII CATG 1 cut(s) 1057
NlaIV GGNNCC 2 cut(s) 255, 432
NmuCI GTSAC 2 cut(s) 154, 911
NsiI ATGCAT 2 cut(s) 865, 1055
OliI CACNNNNGTG 1 cut(s) 468
PasI CCCWGGG 2 cut(s) 249, 1031
PceI AGGCCT 1 cut(s) 266
PdiI GCCGGC 1 cut(s) 411
PfeI GAWTC 2 cut(s) 337, 827
Pfl23II CGTACG 2 cut(s) 453, 815
PinAI ACCGGT 1 cut(s) 664
Ppu21I YACGTR 3 cut(s) 457, 815, 977
Psp6I CCWGG 4 cut(s) 248, 261, 772, 1030
PspEI GGTNACC 1 cut(s) 911
PspGI CCWGG 4 cut(s) 248, 261, 772, 1030
PspLI CGTACG 2 cut(s) 453, 815
PspN4I GGNNCC 2 cut(s) 255, 432
PspPI GGNCC 1 cut(s) 430
PstNI CAGNNNCTG 1 cut(s) 946
RsaI GTAC 4 cut(s) 317, 455, 631, 817
RsaNI GTAC 4 cut(s) 316, 454, 630, 816
RseI CAYNNNNRTG 2 cut(s) 468, 843
SalI GTCGAC 1 cut(s) 1089
SaqAI TTAA 1 cut(s) 936
Sau3AI GATC 4 cut(s) 544, 754, 879, 1136
Sau96I GGNCC 1 cut(s) 430
ScrFI CCNGG 4 cut(s) 250, 263, 774, 1032
SduI GDGCHC 2 cut(s) 256, 465
SfaNI GCATC 5 cut(s) 405, 562, 735, 850, 872
SgrAI CRCCGGYG 2 cut(s) 151, 664
SmiMI CAYNNNNRTG 2 cut(s) 468, 843
SmlI CTYRAG 1 cut(s) 885
SmoI CTYRAG 1 cut(s) 885
Sse9I AATT 8 cut(s) 214, 319, 370, 701, 933, 990, 1104, 1146
SseBI AGGCCT 1 cut(s) 266
SspMI CTAG 2 cut(s) 399, 896
StuI AGGCCT 1 cut(s) 266
StyD4I CCNGG 4 cut(s) 248, 261, 772, 1030
StyI CCWWGG 1 cut(s) 612
TaaI ACNGT 2 cut(s) 311, 948
TaiI ACGT 7 cut(s) 34, 459, 495, 501, 515, 817, 979
TaqI TCGA 5 cut(s) 570, 729, 744, 834, 1090
TaqII GACCGA 1 cut(s) 1073
TasI AATT 8 cut(s) 214, 319, 370, 701, 933, 990, 1104, 1146
TatI WGTACW 2 cut(s) 315, 629
TfiI GAWTC 2 cut(s) 337, 827
Tru1I TTAA 1 cut(s) 936
Tru9I TTAA 1 cut(s) 936
TscAI CASTG 2 cut(s) 1011, 1078
TseFI GTSAC 2 cut(s) 154, 911
TseI GCWGC 1 cut(s) 18
Tsp45I GTSAC 2 cut(s) 154, 911
TspDTI ATGAA 3 cut(s) 972, 984, 1097
TspRI CASTG 2 cut(s) 1011, 1078
XapI RAATTY 3 cut(s) 701, 1104, 1146
XcmI CCANNNNNNNNNTGG 1 cut(s) 383
XmiI GTMKAC 1 cut(s) 1090
XspI CTAG 2 cut(s) 399, 896
ZraI GACGTC 1 cut(s) 493
Zsp2I ATGCAT 2 cut(s) 865, 1055
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.