Prupe.1G151500_v2.0.a1

ubiquitin-protein transferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014114
Physical Location & Seq
Forward (+)
11954911 .. 11955942
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G151500.1

Sequence Viewer

Length: 510 bp
ATGCATGTTGTCTTTAAATCCAGGGTGACCAAACACTTGAAGGCCCTCAAAGCAAAGATGCCCAGATTTGGCATTTTCCCAACTGGGGGTTGTTTTGATGGATGCAGGGATCATACTCAACAAGCCTCAGGTTTTGGGACAAGGATCTGGAACCTGTGTGACAAGCCTCTGGAGCTGCAAATAAGAGTTGGTTCTATACTGAAAAAAGTTCACACAATAAAACCAGGCTCTTCAAAGAGGCTGAAATGCAAGAGCATATACAAAGCCTATATGCCTGGAGGTGGTGAGATTGGGAGTGGTGGCATGAAGAGCTTGCTCTATTACTATGATGAGACTTGCCACCCTTATGTTTGGATTCATGACACTGGTGGTGGTGACACATTGAGAATGGTCAAGCAGCAATATATTAGCCTTGAGGACCTCAGAGACTATTGTGAGATCAGAATCTTTAGGGATCATCAAAGAGGCTGCATATCGGTTCGCAAGAAACCCAGGCCAGATTTTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.33

Weight (kDa)

9.63

Isoelectric Point (pI)

39.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014114)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06145
fragaria_vesca FvH4_4g14500
malus_domestica MD13G1183200.v1.1 MD16G1184100.v1.1
prunus_persica Prupe.1G151500_v2.0.a1
pyrus_communis pycom13g15850 pycom16g15460
rosa_chinensis RchiOBHm_Chr4g0418331
rosa_laevigata RLG00000007875
rosa_multiflora Rmu_sc0011505.1_g000002
rosa_roxburghii Rroxscaffold_5G00361520
rosa_rugosa Rorug04G0152200
rosa_samantha Rh4AG213800 Rh4BG216600 Rh4CG225400 Rh4DG212300
rosa_wichuraiana Rw4G018160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 117, 152, 462
AfiI CCNNNNNNNGG 4 cut(s) 68, 85, 86, 281
AgsI TTSAA 2 cut(s) 40, 234
AjnI CCWGG 4 cut(s) 20, 223, 274, 491
AluBI AGCT 2 cut(s) 175, 312
AluI AGCT 2 cut(s) 175, 312
Alw26I GTCTC 2 cut(s) 326, 420
AlwI GGATC 3 cut(s) 117, 152, 462
AoxI GGCC 2 cut(s) 42, 494
ApeKI GCWGC 3 cut(s) 175, 397, 468
AspS9I GGNCC 2 cut(s) 43, 418
AsuHPI GGTGA 3 cut(s) 37, 296, 386
AvaII GGWCC 1 cut(s) 418
AxyI CCTNAGG 1 cut(s) 127
BbvI GCAGC 3 cut(s) 162, 409, 455
BccI CCATC 1 cut(s) 92
BciT130I CCWGG 4 cut(s) 22, 225, 276, 493
BcoDI GTCTC 2 cut(s) 326, 420
BisI GCNGC 3 cut(s) 176, 398, 469
BlsI GCNGC 3 cut(s) 177, 399, 470
Bme1390I CCNGG 4 cut(s) 22, 225, 276, 493
Bme18I GGWCC 1 cut(s) 418
BmgT120I GGNCC 2 cut(s) 43, 418
BmiI GGNNCC 1 cut(s) 152
BmrFI CCNGG 4 cut(s) 22, 225, 276, 493
BmrI ACTGGG 1 cut(s) 93
BmsI GCATC 2 cut(s) 48, 92
BmuI ACTGGG 1 cut(s) 93
BpmI CTGGAG 2 cut(s) 191, 297
BpuEI CTTGAG 1 cut(s) 434
BsaBI GATNNNNATC 1 cut(s) 443
BsaJI CCNNGG 2 cut(s) 21, 491
Bsc4I CCNNNNNNNGG 4 cut(s) 68, 85, 86, 281
Bse1I ACTGG 2 cut(s) 88, 370
Bse21I CCTNAGG 1 cut(s) 127
Bse8I GATNNNNATC 1 cut(s) 443
BseBI CCWGG 4 cut(s) 22, 225, 276, 493
BseDI CCNNGG 2 cut(s) 21, 491
BseGI GGATG 1 cut(s) 107
BseJI GATNNNNATC 1 cut(s) 443
BseLI CCNNNNNNNGG 4 cut(s) 68, 85, 86, 281
BseMII CTCAG 2 cut(s) 141, 436
BseNI ACTGG 2 cut(s) 88, 370
BseXI GCAGC 3 cut(s) 162, 409, 455
BshFI GGCC 2 cut(s) 44, 496
BslFI GGGAC 1 cut(s) 151
BslI CCNNNNNNNGG 4 cut(s) 68, 85, 86, 281
BsmAI GTCTC 2 cut(s) 326, 420
BsmFI GGGAC 1 cut(s) 151
BsnI GGCC 2 cut(s) 44, 496
Bsp143I GATC 4 cut(s) 109, 144, 438, 454
BspANI GGCC 2 cut(s) 44, 496
BspCNI CTCAG 2 cut(s) 140, 435
BspHI TCATGA 1 cut(s) 358
BspLI GGNNCC 1 cut(s) 152
BspPI GGATC 3 cut(s) 117, 152, 462
BspQI GCTCTTC 2 cut(s) 235, 302
BsrI ACTGG 2 cut(s) 88, 370
BssECI CCNNGG 2 cut(s) 21, 491
BssMI GATC 4 cut(s) 109, 144, 438, 454
Bst2UI CCWGG 4 cut(s) 22, 225, 276, 493
Bst6I CTCTTC 2 cut(s) 235, 302
BstC8I GCNNGC 1 cut(s) 314
BstDEI CTNAG 2 cut(s) 127, 422
BstEII GGTNACC 1 cut(s) 25
BstF5I GGATG 1 cut(s) 107
BstKTI GATC 4 cut(s) 112, 147, 441, 457
BstMAI GTCTC 2 cut(s) 326, 420
BstMBI GATC 4 cut(s) 109, 144, 438, 454
BstMWI GCNNNNNNNGC 3 cut(s) 50, 172, 309
BstNI CCWGG 4 cut(s) 22, 225, 276, 493
BstNSI RCATGY 1 cut(s) 8
BstPI GGTNACC 1 cut(s) 25
BstSCI CCNGG 4 cut(s) 20, 223, 274, 491
BstV1I GCAGC 3 cut(s) 162, 409, 455
BstX2I RGATCY 1 cut(s) 144
BstYI RGATCY 1 cut(s) 144
Bsu36I CCTNAGG 1 cut(s) 127
BsuRI GGCC 2 cut(s) 44, 496
BtsCI GGATG 1 cut(s) 107
BtsIMutI CAGTG 1 cut(s) 363
Cac8I GCNNGC 1 cut(s) 314
CciI TCATGA 1 cut(s) 358
Cfr13I GGNCC 2 cut(s) 43, 418
CviAII CATG 3 cut(s) 5, 304, 359
DdeI CTNAG 2 cut(s) 127, 422
DpnI GATC 4 cut(s) 111, 146, 440, 456
DpnII GATC 4 cut(s) 109, 144, 438, 454
DraI TTTAAA 1 cut(s) 16
Eam1104I CTCTTC 2 cut(s) 235, 302
EarI CTCTTC 2 cut(s) 235, 302
Eco47I GGWCC 1 cut(s) 418
Eco81I CCTNAGG 1 cut(s) 127
Eco91I GGTNACC 1 cut(s) 25
EcoO109I RGGNCCY 2 cut(s) 43, 418
EcoO65I GGTNACC 1 cut(s) 25
EcoRII CCWGG 4 cut(s) 20, 223, 274, 491
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 3 cut(s) 8, 307, 362
FaqI GGGAC 1 cut(s) 151
FatI CATG 3 cut(s) 4, 303, 358
Fnu4HI GCNGC 3 cut(s) 176, 398, 469
FokI GGATG 1 cut(s) 114
Fsp4HI GCNGC 3 cut(s) 176, 398, 469
GluI GCNGC 3 cut(s) 176, 398, 469
GsuI CTGGAG 2 cut(s) 191, 297
HaeIII GGCC 2 cut(s) 44, 496
Hin1II CATG 3 cut(s) 8, 307, 362
HinfI GANTC 2 cut(s) 355, 444
HphI GGTGA 3 cut(s) 37, 296, 386
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 2 cut(s) 425, 443
Hpy188III TCNNGA 3 cut(s) 148, 170, 359
Hpy8I GTNNAC 1 cut(s) 211
HpyAV CCTTC 1 cut(s) 34
HpyCH4V TGCA 5 cut(s) 4, 105, 178, 249, 471
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 172, 309
HpyF3I CTNAG 2 cut(s) 127, 422
Hsp92II CATG 3 cut(s) 8, 307, 362
Kzo9I GATC 4 cut(s) 109, 144, 438, 454
LguI GCTCTTC 2 cut(s) 235, 302
LmnI GCTCC 1 cut(s) 172
Lsp1109I GCAGC 3 cut(s) 162, 409, 455
LweI GCATC 2 cut(s) 48, 92
MaeIII GTNAC 3 cut(s) 25, 158, 374
MalI GATC 4 cut(s) 111, 146, 440, 456
MboI GATC 4 cut(s) 109, 144, 438, 454
MboII GAAGA 2 cut(s) 222, 319
MflI RGATCY 1 cut(s) 144
MnlI CCTC 8 cut(s) 56, 136, 177, 231, 272, 409, 431, 458
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 15
MslI CAYNNNNRTG 1 cut(s) 345
MspR9I CCNGG 4 cut(s) 22, 225, 276, 493
MvaI CCWGG 4 cut(s) 22, 225, 276, 493
MwoI GCNNNNNNNGC 3 cut(s) 50, 172, 309
NdeII GATC 4 cut(s) 109, 144, 438, 454
NlaIII CATG 3 cut(s) 8, 307, 362
NlaIV GGNNCC 1 cut(s) 152
NmuCI GTSAC 3 cut(s) 25, 158, 374
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PagI TCATGA 1 cut(s) 358
PciSI GCTCTTC 2 cut(s) 235, 302
PfeI GAWTC 2 cut(s) 355, 444
PkrI GCNGC 3 cut(s) 177, 399, 470
PpuMI RGGWCCY 1 cut(s) 418
Psp5II RGGWCCY 1 cut(s) 418
Psp6I CCWGG 4 cut(s) 20, 223, 274, 491
PspEI GGTNACC 1 cut(s) 25
PspGI CCWGG 4 cut(s) 20, 223, 274, 491
PspN4I GGNNCC 1 cut(s) 152
PspPI GGNCC 2 cut(s) 43, 418
PspPPI RGGWCCY 1 cut(s) 418
PsuI RGATCY 1 cut(s) 144
RseI CAYNNNNRTG 1 cut(s) 345
SapI GCTCTTC 2 cut(s) 235, 302
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 3 cut(s) 176, 398, 469
Sau3AI GATC 4 cut(s) 109, 144, 438, 454
Sau96I GGNCC 2 cut(s) 43, 418
ScrFI CCNGG 4 cut(s) 22, 225, 276, 493
SetI ASST 6 cut(s) 133, 156, 177, 283, 314, 423
SfaNI GCATC 2 cut(s) 48, 92
SinI GGWCC 1 cut(s) 418
SmiMI CAYNNNNRTG 1 cut(s) 345
SmlI CTYRAG 1 cut(s) 413
SmoI CTYRAG 1 cut(s) 413
StyD4I CCNGG 4 cut(s) 20, 223, 274, 491
TfiI GAWTC 2 cut(s) 355, 444
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TscAI CASTG 1 cut(s) 370
TseFI GTSAC 3 cut(s) 25, 158, 374
TseI GCWGC 3 cut(s) 175, 397, 468
Tsp45I GTSAC 3 cut(s) 25, 158, 374
TspDTI ATGAA 2 cut(s) 320, 347
TspRI CASTG 1 cut(s) 370
VpaK11BI GGWCC 1 cut(s) 418
XceI RCATGY 1 cut(s) 8
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.