Rroxscaffold_5G00361520

E3 ubiquitin-protein ligase LUL4

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0014114
Physical Location & Seq
Reverse (-)
42221786 .. 42222947
1162 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00361520.1

Sequence Viewer

Length: 501 bp
ATGCATGTTTTCTTCAAGTCTAAGGTCACCAAACACTTGAAGTCCCTGAAATCAAAAATTCCCAGATTGTGCATGTTCCCAATTGGGGGATGTTTTGATGGGTGCAGAGACCACACTCAGCAATCCTCAGGGTTTGGCACAAGGATTTGGAACCTGACTGACAAGCCTGTGGAGCTTCAGATAAGAGTTGGGTCCATATTGAAGAAGGTTCACACTTTGAAACCCGGCTCTTCAAAGAGACTGAAATGCAAGAGCATATACAAAGCTTATATGCCTGGGGAGAATGGCAAGGCAGGTATGAAGAGCTTGCTATATTACTATGATGAGACCTGTCACCCTTATGTTTGGATTCATGAGACTGGTGGGGATAGCATGAGGATGGTTAAGCAGCAGTATATCAGTCTTGAGGATTTAAGGGATTGTTGTGAGATCAGAATCTTTAGGGATCATCAACGAGGCTGCTTATCGGTCCGGAAAAAACCCAGGCCAGACTTTTGCTGA

Protein Analysis

166

Amino Acids

19.25

Weight (kDa)

9.62

Isoelectric Point (pI)

36.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014114)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06145
fragaria_vesca FvH4_4g14500
malus_domestica MD13G1183200.v1.1 MD16G1184100.v1.1
prunus_persica Prupe.1G151500_v2.0.a1
pyrus_communis pycom13g15850 pycom16g15460
rosa_chinensis RchiOBHm_Chr4g0418331
rosa_laevigata RLG00000007875
rosa_multiflora Rmu_sc0011505.1_g000002
rosa_roxburghii Rroxscaffold_5G00361520
rosa_rugosa Rorug04G0152200
rosa_samantha Rh4AG213800 Rh4BG216600 Rh4CG225400 Rh4DG212300
rosa_wichuraiana Rw4G018160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 284
AccIII TCCGGA 1 cut(s) 471
AclWI GGATC 1 cut(s) 453
AcsI RAATTY 1 cut(s) 57
AcuI CTGAAG 1 cut(s) 161
AfiI CCNNNNNNNGG 2 cut(s) 85, 86
AgsI TTSAA 5 cut(s) 16, 40, 202, 220, 234
AjnI CCWGG 2 cut(s) 274, 482
AluBI AGCT 3 cut(s) 175, 266, 306
AluI AGCT 3 cut(s) 175, 266, 306
Alw26I GTCTC 4 cut(s) 102, 232, 320, 350
AlwI GGATC 1 cut(s) 453
Aor13HI TCCGGA 1 cut(s) 471
AoxI GGCC 1 cut(s) 485
ApeKI GCWGC 2 cut(s) 388, 459
ApoI RAATTY 1 cut(s) 57
AspS9I GGNCC 2 cut(s) 192, 469
AsuC2I CCSGG 1 cut(s) 225
AsuHPI GGTGA 2 cut(s) 19, 326
AvaII GGWCC 2 cut(s) 192, 469
AxyI CCTNAGG 1 cut(s) 127
BbvI GCAGC 2 cut(s) 400, 446
BccI CCATC 2 cut(s) 92, 373
BciT130I CCWGG 2 cut(s) 276, 484
BcnI CCSGG 1 cut(s) 225
BcoDI GTCTC 4 cut(s) 102, 232, 320, 350
BfuAI ACCTGC 1 cut(s) 284
BisI GCNGC 2 cut(s) 389, 460
BlsI GCNGC 2 cut(s) 390, 461
Bme1390I CCNGG 3 cut(s) 225, 276, 484
Bme18I GGWCC 2 cut(s) 192, 469
BmgT120I GGNCC 2 cut(s) 192, 469
BmiI GGNNCC 2 cut(s) 152, 193
BmrFI CCNGG 3 cut(s) 225, 276, 484
BpuEI CTTGAG 1 cut(s) 425
BpuMI CCSGG 1 cut(s) 225
BsaBI GATNNNNATC 1 cut(s) 434
BsaI GGTCTC 2 cut(s) 102, 320
BsaJI CCNNGG 2 cut(s) 275, 482
BsaWI WCCGGW 1 cut(s) 471
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 86
Bse1I ACTGG 1 cut(s) 364
Bse21I CCTNAGG 1 cut(s) 127
Bse8I GATNNNNATC 1 cut(s) 434
BseAI TCCGGA 1 cut(s) 471
BseBI CCWGG 2 cut(s) 276, 484
BseDI CCNNGG 2 cut(s) 275, 482
BseGI GGATG 2 cut(s) 95, 384
BseJI GATNNNNATC 1 cut(s) 434
BseLI CCNNNNNNNGG 2 cut(s) 85, 86
BseMII CTCAG 2 cut(s) 131, 141
BseNI ACTGG 1 cut(s) 364
BseXI GCAGC 2 cut(s) 400, 446
BsgI GTGCAG 1 cut(s) 124
BshFI GGCC 1 cut(s) 487
BsiSI CCGG 2 cut(s) 225, 472
BslFI GGGAC 1 cut(s) 28
BslI CCNNNNNNNGG 2 cut(s) 85, 86
BsmAI GTCTC 4 cut(s) 102, 232, 320, 350
BsmFI GGGAC 1 cut(s) 28
BsnI GGCC 1 cut(s) 487
Bso31I GGTCTC 2 cut(s) 102, 320
Bsp13I TCCGGA 1 cut(s) 471
Bsp143I GATC 2 cut(s) 429, 445
BspANI GGCC 1 cut(s) 487
BspCNI CTCAG 2 cut(s) 130, 140
BspEI TCCGGA 1 cut(s) 471
BspHI TCATGA 1 cut(s) 352
BspLI GGNNCC 2 cut(s) 152, 193
BspMI ACCTGC 1 cut(s) 284
BspPI GGATC 1 cut(s) 453
BspQI GCTCTTC 2 cut(s) 235, 296
BspTNI GGTCTC 2 cut(s) 102, 320
BsrI ACTGG 1 cut(s) 364
BssECI CCNNGG 2 cut(s) 275, 482
BssMI GATC 2 cut(s) 429, 445
Bst2UI CCWGG 2 cut(s) 276, 484
Bst6I CTCTTC 2 cut(s) 235, 296
BstC8I GCNNGC 1 cut(s) 308
BstDEI CTNAG 3 cut(s) 21, 117, 127
BstEII GGTNACC 1 cut(s) 25
BstF5I GGATG 2 cut(s) 95, 384
BstKTI GATC 2 cut(s) 432, 448
BstMAI GTCTC 4 cut(s) 102, 232, 320, 350
BstMBI GATC 2 cut(s) 429, 445
BstMWI GCNNNNNNNGC 1 cut(s) 172
BstNI CCWGG 2 cut(s) 276, 484
BstNSI RCATGY 2 cut(s) 8, 76
BstPI GGTNACC 1 cut(s) 25
BstSCI CCNGG 3 cut(s) 223, 274, 482
BstV1I GCAGC 2 cut(s) 400, 446
Bsu36I CCTNAGG 1 cut(s) 127
BsuRI GGCC 1 cut(s) 487
BtsCI GGATG 2 cut(s) 95, 384
BveI ACCTGC 1 cut(s) 284
Cac8I GCNNGC 1 cut(s) 308
CciI TCATGA 1 cut(s) 352
Cfr13I GGNCC 2 cut(s) 192, 469
CpoI CGGWCCG 1 cut(s) 469
CspI CGGWCCG 1 cut(s) 469
CviAII CATG 4 cut(s) 5, 73, 353, 373
CviJI RGCY 7 cut(s) 166, 175, 228, 266, 306, 459, 487
CviKI_1 RGCY 7 cut(s) 166, 175, 228, 266, 306, 459, 487
DdeI CTNAG 3 cut(s) 21, 117, 127
DpnI GATC 2 cut(s) 431, 447
DpnII GATC 2 cut(s) 429, 445
Eam1104I CTCTTC 2 cut(s) 235, 296
EarI CTCTTC 2 cut(s) 235, 296
Eco31I GGTCTC 2 cut(s) 102, 320
Eco47I GGWCC 2 cut(s) 192, 469
Eco57I CTGAAG 1 cut(s) 161
Eco81I CCTNAGG 1 cut(s) 127
Eco91I GGTNACC 1 cut(s) 25
EcoO65I GGTNACC 1 cut(s) 25
EcoRII CCWGG 2 cut(s) 274, 482
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 4 cut(s) 8, 76, 356, 376
FaqI GGGAC 1 cut(s) 28
FatI CATG 4 cut(s) 4, 72, 352, 372
Fnu4HI GCNGC 2 cut(s) 389, 460
FokI GGATG 2 cut(s) 102, 391
Fsp4HI GCNGC 2 cut(s) 389, 460
GluI GCNGC 2 cut(s) 389, 460
HaeIII GGCC 1 cut(s) 487
HapII CCGG 2 cut(s) 225, 472
Hin1II CATG 4 cut(s) 8, 76, 356, 376
HindIII AAGCTT 1 cut(s) 264
HinfI GANTC 2 cut(s) 349, 435
HpaII CCGG 2 cut(s) 225, 472
HphI GGTGA 2 cut(s) 19, 326
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 2 cut(s) 180, 434
Hpy188III TCNNGA 3 cut(s) 353, 404, 472
Hpy8I GTNNAC 1 cut(s) 211
HpyAV CCTTC 1 cut(s) 199
HpyCH4V TGCA 4 cut(s) 4, 72, 105, 249
HpyF10VI GCNNNNNNNGC 1 cut(s) 172
HpyF3I CTNAG 3 cut(s) 21, 117, 127
Hsp92II CATG 4 cut(s) 8, 76, 356, 376
Kpn2I TCCGGA 1 cut(s) 471
Kzo9I GATC 2 cut(s) 429, 445
LguI GCTCTTC 2 cut(s) 235, 296
LmnI GCTCC 1 cut(s) 172
Lsp1109I GCAGC 2 cut(s) 400, 446
MaeIII GTNAC 2 cut(s) 25, 332
MalI GATC 2 cut(s) 431, 447
MboI GATC 2 cut(s) 429, 445
MboII GAAGA 4 cut(s) 4, 214, 222, 313
MfeI CAATTG 1 cut(s) 81
MluCI AATT 2 cut(s) 57, 81
MnlI CCTC 4 cut(s) 136, 369, 400, 449
Mph1103I ATGCAT 1 cut(s) 6
MroI TCCGGA 1 cut(s) 471
MseI TTAA 2 cut(s) 384, 413
MslI CAYNNNNRTG 2 cut(s) 339, 377
MspI CCGG 2 cut(s) 225, 472
MspR9I CCNGG 3 cut(s) 225, 276, 484
MunI CAATTG 1 cut(s) 81
MvaI CCWGG 2 cut(s) 276, 484
MwoI GCNNNNNNNGC 1 cut(s) 172
NciI CCSGG 1 cut(s) 225
NdeII GATC 2 cut(s) 429, 445
NlaIII CATG 4 cut(s) 8, 76, 356, 376
NlaIV GGNNCC 2 cut(s) 152, 193
NmuCI GTSAC 2 cut(s) 25, 332
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 8, 76
PagI TCATGA 1 cut(s) 352
PciSI GCTCTTC 2 cut(s) 235, 296
PfeI GAWTC 2 cut(s) 349, 435
PkrI GCNGC 2 cut(s) 390, 461
Psp6I CCWGG 2 cut(s) 274, 482
PspEI GGTNACC 1 cut(s) 25
PspGI CCWGG 2 cut(s) 274, 482
PspN4I GGNNCC 2 cut(s) 152, 193
PspPI GGNCC 2 cut(s) 192, 469
RseI CAYNNNNRTG 2 cut(s) 339, 377
Rsr2I CGGWCCG 1 cut(s) 469
RsrII CGGWCCG 1 cut(s) 469
SapI GCTCTTC 2 cut(s) 235, 296
SaqAI TTAA 2 cut(s) 384, 413
SatI GCNGC 2 cut(s) 389, 460
Sau3AI GATC 2 cut(s) 429, 445
Sau96I GGNCC 2 cut(s) 192, 469
ScrFI CCNGG 3 cut(s) 225, 276, 484
SetI ASST 8 cut(s) 27, 156, 177, 210, 268, 298, 308, 332
SinI GGWCC 2 cut(s) 192, 469
SmiMI CAYNNNNRTG 2 cut(s) 339, 377
SmlI CTYRAG 1 cut(s) 404
SmoI CTYRAG 1 cut(s) 404
Sse9I AATT 2 cut(s) 57, 81
StyD4I CCNGG 3 cut(s) 223, 274, 482
TaqII GACCGA 1 cut(s) 457
TasI AATT 2 cut(s) 57, 81
TfiI GAWTC 2 cut(s) 349, 435
Tru1I TTAA 2 cut(s) 384, 413
Tru9I TTAA 2 cut(s) 384, 413
TseFI GTSAC 2 cut(s) 25, 332
TseI GCWGC 2 cut(s) 388, 459
Tsp45I GTSAC 2 cut(s) 25, 332
TspDTI ATGAA 2 cut(s) 314, 341
VpaK11BI GGWCC 2 cut(s) 192, 469
XapI RAATTY 1 cut(s) 57
XceI RCATGY 2 cut(s) 8, 76
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.