AT3G06170

Serine incorporator (Serinc)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011082
Physical Location & Seq
Forward (+)
1867415 .. 1869963
2549 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G06170.1

Sequence Viewer

Length: 1230 bp
ATGGCGTGTTGCTTAGCTTCGTGCTGTGCGTCGGCGACTTGTGGATTATGCTCGTCGGTAGCATCGGGGATATCGAGGAAATCAGCGAGGATCGCTTATTGTGGTCTCTTCGGTGCCTCTCTTGTCGTCTCCTGGATTCTTCGTGAGACTGGTGCTCCGCTCCTCGAGAAACTCCCTTGGATCAATACTTCTGATTCATATACCAAAGAATGGTATCAGCAACAAGCTGTTCTTCGTGTGAGCTTTGGGAATTTCCTCTTCTTTGCAATATATGCTTTGATCATGATTGGTGTCAAGGACCAGAATGACAGGCGTGACTCGTGGCACCATGGTGGGTGGGGTTTGAAGATGATTGTCTGGTTTTTGCTTGTTGTCCTCATGTTTTTTGTTCCAAATGTTATCGTCTCGTTATATGGAACGTTGTCAAAATTTGGTGCTGGAGCGTTTCTGTTGGTTCAAGTGGTCTTATTATTAGATGCTACACATAACTGGAATGATTCATGGGTCGAAAAGGACGAAAAGAAATGGTACATCGCTCTGCTTGTCATATCAATCGTGTGTTACATTGCTACATATACCTTCTCAGGAATCCTGTTCATCTGGTTCAACCCATCTGGTCAGGATTGTGGACTTAATGTTTTCTTCATTGTCATGCCGATGATCTTGGCTTTTGTTTTTGCGATTATTGCTTTACATCCTGCGGTGAATGGCAGTCTTTTACCGGCATCAGTTATATCGGTTTACTGTGCTTATGTCTGTTACACGGGCCTCTCTAGCGAACCACATGACTATGTGTGCAATGGCCTTAACAAATCCAAGGCAGTGAACGCAAGTACTCTCATCCTTGGAATGCTCACTACGGTTCTCTCGGTTCTATACTCCGCCCTCCGAGCTGGCTCTTCCACCACATTCCTCTCGCCACCGTCTTCACCCAGATCAGGTGTGAAGGATGCATTGTTAGGGGACCCTGAGGACGGGAAGAAGAGTGGTGAAGCCGAGGCACGGCCTGTGAGTTACTCATACTCCTTCTTCCATATCATCTTTGCGCTTGCGAGCATGTACGCTGCAATGCTTCTCTCGGGATGGACTGACTCATCAGAGAGTGCGACTCTGATCGATGTGGGATGGACCTCGGTCTGGGTCAAGATATGCACGGGTTGGGTCACGGCCGGACTCTACATATGGACACTCATTGCACCACTCATCCTTCCAGATCGCGAGTTCTACTAA

Protein Analysis

409

Amino Acids

44.88

Weight (kDa)

6.58

Isoelectric Point (pI)

35.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serinc PF03348 6 - 406 2e-122 Serine incorporator (Serinc)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 113, 324
AccB7I CCANNNNNTGG 1 cut(s) 210
AccBSI CCGCTC 1 cut(s) 160
AccII CGCG 1 cut(s) 1218
AciI CCGC 3 cut(s) 158, 701, 882
AclI AACGTT 1 cut(s) 419
AclWI GGATC 2 cut(s) 98, 188
AcoI YGGCCR 1 cut(s) 1167
AcsI RAATTY 2 cut(s) 250, 428
AfaI GTAC 3 cut(s) 530, 835, 1061
AfiI CCNNNNNNNGG 5 cut(s) 210, 938, 974, 1002, 1137
AgsI TTSAA 3 cut(s) 346, 458, 607
AjnI CCWGG 1 cut(s) 131
AleI CACNNNNGTG 1 cut(s) 330
AluBI AGCT 4 cut(s) 17, 227, 243, 893
AluI AGCT 4 cut(s) 17, 227, 243, 893
Alw21I GWGCWC 1 cut(s) 157
Alw26I GTCTC 4 cut(s) 110, 133, 140, 409
AlwI GGATC 2 cut(s) 98, 188
Ama87I CYCGRG 2 cut(s) 164, 1078
AoxI GGCC 4 cut(s) 766, 802, 1004, 1167
ApeKI GCWGC 1 cut(s) 1064
ApoI RAATTY 2 cut(s) 250, 428
AspLEI GCGC 1 cut(s) 1048
AspS9I GGNCC 4 cut(s) 298, 766, 964, 1128
AsuHPI GGTGA 3 cut(s) 715, 921, 1001
AvaI CYCGRG 2 cut(s) 164, 1078
AvaII GGWCC 3 cut(s) 298, 964, 1128
AxyI CCTNAGG 1 cut(s) 969
BanI GGYRCC 2 cut(s) 113, 324
BauI CACGAG 1 cut(s) 319
BbsI GAAGAC 1 cut(s) 918
Bbv12I GWGCWC 1 cut(s) 157
BbvI GCAGC 1 cut(s) 1051
BccI CCATC 3 cut(s) 619, 1077, 1119
BceAI ACGGC 2 cut(s) 1019, 1182
BciT130I CCWGG 1 cut(s) 133
BclI TGATCA 1 cut(s) 279
BcoDI GTCTC 4 cut(s) 110, 133, 140, 409
BfaI CTAG 1 cut(s) 774
BisI GCNGC 1 cut(s) 1065
BlpI GCTNAGC 1 cut(s) 13
BlsI GCNGC 1 cut(s) 1066
BmcAI AGTACT 1 cut(s) 835
Bme1390I CCNGG 1 cut(s) 133
Bme18I GGWCC 3 cut(s) 298, 964, 1128
BmeT110I CYCGRG 2 cut(s) 164, 1078
BmgT120I GGNCC 4 cut(s) 298, 766, 964, 1128
BmiI GGNNCC 4 cut(s) 115, 326, 965, 966
BmrFI CCNGG 1 cut(s) 133
BmsI GCATC 4 cut(s) 71, 466, 734, 940
BoxI GACNNNNGTC 1 cut(s) 1133
BpiI GAAGAC 1 cut(s) 918
BplI GAGNNNNNCTC 2 cut(s) 1093, 1125
BpmI CTGGAG 1 cut(s) 459
Bpu1102I GCTNAGC 1 cut(s) 13
Bsa29I ATCGAT 1 cut(s) 1116
BsaI GGTCTC 1 cut(s) 110
BsaJI CCNNGG 6 cut(s) 176, 328, 816, 844, 996, 1131
BsaXI ACNNNNNCTCC 4 cut(s) 139, 169, 1007, 1037
Bsc4I CCNNNNNNNGG 5 cut(s) 210, 938, 974, 1002, 1137
Bse118I RCCGGY 1 cut(s) 721
Bse1I ACTGG 2 cut(s) 154, 494
Bse21I CCTNAGG 1 cut(s) 969
Bse3DI GCAATG 4 cut(s) 564, 805, 1074, 1191
BseBI CCWGG 1 cut(s) 133
BseCI ATCGAT 1 cut(s) 1116
BseDI CCNNGG 6 cut(s) 176, 328, 816, 844, 996, 1131
BseGI GGATG 6 cut(s) 694, 840, 955, 1088, 1130, 1203
BseLI CCNNNNNNNGG 5 cut(s) 210, 938, 974, 1002, 1137
BseMI GCAATG 4 cut(s) 564, 805, 1074, 1191
BseMII CTCAG 2 cut(s) 597, 960
BseNI ACTGG 2 cut(s) 154, 494
BseRI GAGGAG 1 cut(s) 152
BseX3I CGGCCG 1 cut(s) 1167
BseXI GCAGC 1 cut(s) 1051
Bsh1236I CGCG 1 cut(s) 1218
Bsh1285I CGRYCG 1 cut(s) 1170
BshFI GGCC 4 cut(s) 768, 804, 1006, 1169
BshNI GGYRCC 2 cut(s) 113, 324
BshVI ATCGAT 1 cut(s) 1116
BsiEI CGRYCG 1 cut(s) 1170
BsiHKAI GWGCWC 1 cut(s) 157
BsiHKCI CYCGRG 2 cut(s) 164, 1078
BsiSI CCGG 2 cut(s) 722, 1170
BslFI GGGAC 1 cut(s) 977
BslI CCNNNNNNNGG 5 cut(s) 210, 938, 974, 1002, 1137
BsmAI GTCTC 4 cut(s) 110, 133, 140, 409
BsmBI CGTCTC 2 cut(s) 133, 409
BsmFI GGGAC 1 cut(s) 977
BsmI GAATGC 1 cut(s) 855
BsnI GGCC 4 cut(s) 768, 804, 1006, 1169
Bso31I GGTCTC 1 cut(s) 110
BsoBI CYCGRG 2 cut(s) 164, 1078
Bsp1286I GDGCHC 1 cut(s) 157
Bsp143I GATC 7 cut(s) 90, 180, 279, 660, 935, 1113, 1213
Bsp1720I GCTNAGC 1 cut(s) 13
Bsp19I CCATGG 1 cut(s) 328
Bsp68I TCGCGA 1 cut(s) 1218
BspACI CCGC 3 cut(s) 158, 701, 882
BspANI GGCC 4 cut(s) 768, 804, 1006, 1169
BspCNI CTCAG 2 cut(s) 596, 961
BspDI ATCGAT 1 cut(s) 1116
BspFNI CGCG 1 cut(s) 1218
BspHI TCATGA 1 cut(s) 282
BspLI GGNNCC 4 cut(s) 115, 326, 965, 966
BspPI GGATC 2 cut(s) 98, 188
BspQI GCTCTTC 1 cut(s) 904
BspT107I GGYRCC 2 cut(s) 113, 324
BspTNI GGTCTC 1 cut(s) 110
BsrBI CCGCTC 1 cut(s) 160
BsrDI GCAATG 4 cut(s) 564, 805, 1074, 1191
BsrFI RCCGGY 1 cut(s) 721
BsrI ACTGG 2 cut(s) 154, 494
BssAI RCCGGY 1 cut(s) 721
BssECI CCNNGG 6 cut(s) 176, 328, 816, 844, 996, 1131
BssMI GATC 7 cut(s) 90, 180, 279, 660, 935, 1113, 1213
BssSI CACGAG 1 cut(s) 319
BssT1I CCWWGG 4 cut(s) 176, 328, 816, 844
Bst2BI CACGAG 1 cut(s) 319
Bst2UI CCWGG 1 cut(s) 133
Bst4CI ACNGT 3 cut(s) 746, 862, 924
Bst6I CTCTTC 4 cut(s) 113, 263, 904, 977
BstAPI GCANNNNNTGC 1 cut(s) 272
BstC8I GCNNGC 3 cut(s) 895, 1050, 1054
BstDEI CTNAG 3 cut(s) 13, 583, 969
BstDSI CCRYGG 1 cut(s) 328
BstF5I GGATG 6 cut(s) 694, 840, 955, 1088, 1130, 1203
BstFNI CGCG 1 cut(s) 1218
BstHHI GCGC 1 cut(s) 1048
BstKTI GATC 7 cut(s) 93, 183, 282, 663, 938, 1116, 1216
BstMAI GTCTC 4 cut(s) 110, 133, 140, 409
BstMBI GATC 7 cut(s) 90, 180, 279, 660, 935, 1113, 1213
BstMCI CGRYCG 1 cut(s) 1170
BstMWI GCNNNNNNNGC 6 cut(s) 92, 272, 686, 774, 827, 890
BstNI CCWGG 1 cut(s) 133
BstNSI RCATGY 1 cut(s) 1060
BstPAI GACNNNNGTC 1 cut(s) 1133
BstSCI CCNGG 1 cut(s) 131
BstUI CGCG 1 cut(s) 1218
BstV1I GCAGC 1 cut(s) 1051
BstV2I GAAGAC 1 cut(s) 918
BstZI CGGCCG 1 cut(s) 1167
Bsu15I ATCGAT 1 cut(s) 1116
Bsu36I CCTNAGG 1 cut(s) 969
BsuRI GGCC 4 cut(s) 768, 804, 1006, 1169
BsuTUI ATCGAT 1 cut(s) 1116
BtgI CCRYGG 1 cut(s) 328
BtgZI GCGATG 1 cut(s) 517
BtsCI GGATG 6 cut(s) 694, 840, 955, 1088, 1130, 1203
BtsI GCAGTG 1 cut(s) 828
BtsIMutI CAGTG 1 cut(s) 828
BtuMI TCGCGA 1 cut(s) 1218
Cac8I GCNNGC 3 cut(s) 895, 1050, 1054
CciI TCATGA 1 cut(s) 282
CfoI GCGC 1 cut(s) 1048
Cfr10I RCCGGY 1 cut(s) 721
Cfr13I GGNCC 4 cut(s) 298, 766, 964, 1128
ClaI ATCGAT 1 cut(s) 1116
CseI GACGC 1 cut(s) 18
Csp6I GTAC 3 cut(s) 529, 834, 1060
CviAII CATG 7 cut(s) 283, 329, 379, 501, 652, 785, 1057
CviQI GTAC 3 cut(s) 529, 834, 1060
DdeI CTNAG 3 cut(s) 13, 583, 969
DpnI GATC 7 cut(s) 92, 182, 281, 662, 937, 1115, 1215
DpnII GATC 7 cut(s) 90, 180, 279, 660, 935, 1113, 1213
EaeI YGGCCR 1 cut(s) 1167
EagI CGGCCG 1 cut(s) 1167
Eam1104I CTCTTC 4 cut(s) 113, 263, 904, 977
EarI CTCTTC 4 cut(s) 113, 263, 904, 977
EciI GGCGGA 1 cut(s) 871
EclXI CGGCCG 1 cut(s) 1167
Eco130I CCWWGG 4 cut(s) 176, 328, 816, 844
Eco31I GGTCTC 1 cut(s) 110
Eco32I GATATC 1 cut(s) 72
Eco47I GGWCC 3 cut(s) 298, 964, 1128
Eco52I CGGCCG 1 cut(s) 1167
Eco81I CCTNAGG 1 cut(s) 969
Eco88I CYCGRG 2 cut(s) 164, 1078
EcoO109I RGGNCCY 1 cut(s) 964
EcoRII CCWGG 1 cut(s) 131
EcoRV GATATC 1 cut(s) 72
EcoT14I CCWWGG 4 cut(s) 176, 328, 816, 844
EcoT22I ATGCAT 1 cut(s) 955
ErhI CCWWGG 4 cut(s) 176, 328, 816, 844
Esp3I CGTCTC 2 cut(s) 133, 409
FaeI CATG 7 cut(s) 286, 332, 382, 504, 655, 788, 1060
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FaqI GGGAC 1 cut(s) 977
FatI CATG 7 cut(s) 282, 328, 378, 500, 651, 784, 1056
FauNDI CATATG 1 cut(s) 1181
FbaI TGATCA 1 cut(s) 279
Fnu4HI GCNGC 1 cut(s) 1065
FokI GGATG 6 cut(s) 681, 827, 962, 1095, 1137, 1190
Fsp4HI GCNGC 1 cut(s) 1065
FspBI CTAG 1 cut(s) 774
GlaI GCGC 1 cut(s) 1047
GluI GCNGC 1 cut(s) 1065
GsuI CTGGAG 1 cut(s) 459
HaeIII GGCC 4 cut(s) 768, 804, 1006, 1169
HapII CCGG 2 cut(s) 722, 1170
HgaI GACGC 1 cut(s) 18
HhaI GCGC 1 cut(s) 1048
Hin1II CATG 7 cut(s) 286, 332, 382, 504, 655, 788, 1060
Hin6I GCGC 1 cut(s) 1046
HinP1I GCGC 1 cut(s) 1046
HinfI GANTC 8 cut(s) 136, 194, 317, 497, 588, 1091, 1108, 1173
HpaII CCGG 2 cut(s) 722, 1170
HphI GGTGA 3 cut(s) 715, 921, 1001
Hpy166II GTNNAC 3 cut(s) 629, 742, 826
Hpy188I TCNGA 4 cut(s) 193, 890, 1099, 1113
Hpy188III TCNNGA 9 cut(s) 143, 166, 283, 585, 620, 1080, 1144, 1211, 1217
Hpy8I GTNNAC 3 cut(s) 629, 742, 826
Hpy99I CGWCG 2 cut(s) 34, 58
HpyAV CCTTC 4 cut(s) 589, 940, 1036, 1217
HpyCH4III ACNGT 3 cut(s) 746, 862, 924
HpyCH4IV ACGT 1 cut(s) 419
HpyCH4V TGCA 6 cut(s) 266, 798, 953, 1067, 1152, 1196
HpyF10VI GCNNNNNNNGC 6 cut(s) 92, 272, 686, 774, 827, 890
HpyF3I CTNAG 3 cut(s) 13, 583, 969
HpySE526I ACGT 1 cut(s) 419
Hsp92II CATG 7 cut(s) 286, 332, 382, 504, 655, 788, 1060
HspAI GCGC 1 cut(s) 1046
KflI GGGWCCC 1 cut(s) 964
Ksp22I TGATCA 1 cut(s) 279
Kzo9I GATC 7 cut(s) 90, 180, 279, 660, 935, 1113, 1213
LguI GCTCTTC 1 cut(s) 904
LmnI GCTCC 3 cut(s) 160, 165, 440
Lsp1109I GCAGC 1 cut(s) 1051
LweI GCATC 4 cut(s) 71, 466, 734, 940
MaeI CTAG 1 cut(s) 774
MaeII ACGT 1 cut(s) 419
MaeIII GTNAC 5 cut(s) 314, 560, 758, 1013, 1162
MalI GATC 7 cut(s) 92, 182, 281, 662, 937, 1115, 1215
MbiI CCGCTC 1 cut(s) 160
MboI GATC 7 cut(s) 90, 180, 279, 660, 935, 1113, 1213
MhlI GDGCHC 1 cut(s) 157
MluCI AATT 2 cut(s) 250, 428
MlyI GAGTC 4 cut(s) 311, 1085, 1102, 1167
Mph1103I ATGCAT 1 cut(s) 955
MseI TTAA 2 cut(s) 633, 807
MslI CAYNNNNRTG 4 cut(s) 330, 650, 656, 789
MspI CCGG 2 cut(s) 722, 1170
MspR9I CCNGG 1 cut(s) 133
Mva1269I GAATGC 1 cut(s) 855
MvaI CCWGG 1 cut(s) 133
MvnI CGCG 1 cut(s) 1218
MwoI GCNNNNNNNGC 6 cut(s) 92, 272, 686, 774, 827, 890
NcoI CCATGG 1 cut(s) 328
NdeI CATATG 1 cut(s) 1181
NdeII GATC 7 cut(s) 90, 180, 279, 660, 935, 1113, 1213
NlaIII CATG 7 cut(s) 286, 332, 382, 504, 655, 788, 1060
NlaIV GGNNCC 4 cut(s) 115, 326, 965, 966
NmeAIII GCCGAG 1 cut(s) 1021
NmuCI GTSAC 2 cut(s) 314, 1162
NruI TCGCGA 1 cut(s) 1218
NsiI ATGCAT 1 cut(s) 955
NspI RCATGY 1 cut(s) 1060
OliI CACNNNNGTG 1 cut(s) 330
PaeR7I CTCGAG 1 cut(s) 164
PagI TCATGA 1 cut(s) 282
PciSI GCTCTTC 1 cut(s) 904
PcsI WCGNNNNNNNCGW 3 cut(s) 26, 71, 513
PctI GAATGC 1 cut(s) 855
PfeI GAWTC 4 cut(s) 136, 194, 497, 588
PflMI CCANNNNNTGG 1 cut(s) 210
PfoI TCCNGGA 1 cut(s) 131
PkrI GCNGC 1 cut(s) 1066
PleI GAGTC 4 cut(s) 311, 1085, 1102, 1167
PpsI GAGTC 4 cut(s) 311, 1085, 1102, 1167
PpuMI RGGWCCY 1 cut(s) 964
PshAI GACNNNNGTC 1 cut(s) 1133
Psp1406I AACGTT 1 cut(s) 419
Psp5II RGGWCCY 1 cut(s) 964
Psp6I CCWGG 1 cut(s) 131
PspGI CCWGG 1 cut(s) 131
PspN4I GGNNCC 4 cut(s) 115, 326, 965, 966
PspPI GGNCC 4 cut(s) 298, 766, 964, 1128
PspPPI RGGWCCY 1 cut(s) 964
RruI TCGCGA 1 cut(s) 1218
RsaI GTAC 3 cut(s) 530, 835, 1061
RsaNI GTAC 3 cut(s) 529, 834, 1060
RseI CAYNNNNRTG 4 cut(s) 330, 650, 656, 789
SapI GCTCTTC 1 cut(s) 904
SaqAI TTAA 2 cut(s) 633, 807
SatI GCNGC 1 cut(s) 1065
Sau3AI GATC 7 cut(s) 90, 180, 279, 660, 935, 1113, 1213
Sau96I GGNCC 4 cut(s) 298, 766, 964, 1128
ScaI AGTACT 1 cut(s) 835
SchI GAGTC 4 cut(s) 311, 1085, 1102, 1167
ScrFI CCNGG 1 cut(s) 133
SduI GDGCHC 1 cut(s) 157
SetI ASST 8 cut(s) 19, 229, 245, 422, 581, 895, 943, 1133
SfaNI GCATC 4 cut(s) 71, 466, 734, 940
Sfr274I CTCGAG 1 cut(s) 164
SinI GGWCC 3 cut(s) 298, 964, 1128
SlaI CTCGAG 1 cut(s) 164
SmiMI CAYNNNNRTG 4 cut(s) 330, 650, 656, 789
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 2 cut(s) 250, 428
SsiI CCGC 3 cut(s) 158, 701, 882
SspMI CTAG 1 cut(s) 774
StyD4I CCNGG 1 cut(s) 131
StyI CCWWGG 4 cut(s) 176, 328, 816, 844
TaaI ACNGT 3 cut(s) 746, 862, 924
TaiI ACGT 1 cut(s) 422
TaqI TCGA 4 cut(s) 74, 165, 507, 1116
TaqII GACCGA 1 cut(s) 1123
TasI AATT 2 cut(s) 250, 428
TatI WGTACW 1 cut(s) 833
TfiI GAWTC 4 cut(s) 136, 194, 497, 588
Tru1I TTAA 2 cut(s) 633, 807
Tru9I TTAA 2 cut(s) 633, 807
TscAI CASTG 1 cut(s) 828
TseFI GTSAC 2 cut(s) 314, 1162
TseI GCWGC 1 cut(s) 1064
Tsp45I GTSAC 2 cut(s) 314, 1162
TspDTI ATGAA 4 cut(s) 186, 489, 586, 634
TspRI CASTG 1 cut(s) 828
Van91I CCANNNNNTGG 1 cut(s) 210
VpaK11BI GGWCC 3 cut(s) 298, 964, 1128
XapI RAATTY 2 cut(s) 250, 428
XceI RCATGY 1 cut(s) 1060
XhoI CTCGAG 1 cut(s) 164
XspI CTAG 1 cut(s) 774
ZrmI AGTACT 1 cut(s) 835
Zsp2I ATGCAT 1 cut(s) 955
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.