FvH4_4g14410

Serine incorporator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0011082
Physical Location & Seq
Reverse (-)
18035140 .. 18038956
3817 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g14410.t2

Sequence Viewer

Length: 1230 bp
ATGTCGTGGTTGTGCTCTTGCTGCGCTGCCTCCACTTGCGGCCTCTGCTCCTCCGTCGCCTCCGGGATTTCCAGCAAATCCGCCAGACTCGGCTACTGTGGACTCTTCGGGCTTTCCTTGGTCGTCACTTGGATTCTAAGAGAAGTTGGAGCTCCTCTCCTGGAGAAAATCCCATGGATAAGCTCTTCGGAGACTCACACCAAGGCATGGTATCAAACACAAGCAGTTCTTCGGGTCAGCATGGGGAATTTCTTGTTTTTTGCGATACTTGCGCTTATAATGATTGGTGTGAAGGATAGAAATGACCGGCGAGATGGGTGGCATCATGGTGGATGGATTGCCAAGATGGTCATCTGGCTTTTACTTATCATTCTCATGTTTTTCCTTCCAGACATAGTTATCACCATCTACGGAGATCTATCAAAATTTGGGGCAGGCCTGTTTTTACTGGTTCAAGTGATTATCTTGCTAGACTTTACTCACTCCTGGAATGATGCATGGGTAGAGAAAGATGAACAAAAATGGTATATCGCTTTGCTTGCTGTATCGATTGGATGCTATATTGCAGCATTTGCATTCTCAGGCATTCTGTTCATTTGGTTCAACCCCTCTGGCAATGACTGTGGCCTTAATGTCTTCTTCATTGTCATGACCATGGTTCTTGCATTTGCATTTGCAGTGATTGCATTACACCCAACGGTGAATGGCAGCCTCCTTCCTGCTTCGGTGATATCAGTTTATAGTGCTTATGTGTGCTACACGGCTCTTTCCAGTGAGCCTCGTGACTATGCTTGCAATGGTCTTCACCACTCCAGCGCGGTCTCTGTAGGTACTCTTCTTCTTGGGATGGCGACGACCATTCTTTCAGTTCTGTACTCTGCATTGCGTGCTGGATCTTCAACAACTTTTCTGTCACCACCGTCTTCACCCAGGGCAGCTGAAAAGAAACCTCTTCTTGAGGGGAAAGAGTTGGAAGAAGGGAAAGACAAGAATGAAAAAGAAGCAAAACCTGTCAGCTATTCCTATACATTTTTCCACCTGATATTTGCCTTGGCTAGCATGTATTCAGCCATGCTTCTTTCGGGTTGGACCAACTCAGCTGAGAGCTCAGACCTTATAGACGTTGGCTGGACATCAGTTTGGGTCCGAATCTGTACAGAGTGGGTTACTGCTGCACTATACGTTTGGTCTCTTGTGGCTCCTTTACTTTTCCCAGATCGTGAGTTCTAG

Protein Analysis

410

Amino Acids

45.03

Weight (kDa)

6.07

Isoelectric Point (pI)

28.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serinc PF03348 2 - 327 1.5e-105 Serine incorporator (Serinc)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 278
AccB7I CCANNNNNTGG 1 cut(s) 207
AccII CGCG 1 cut(s) 818
AciI CCGC 3 cut(s) 39, 81, 818
AclWI GGATC 1 cut(s) 901
AcsI RAATTY 2 cut(s) 247, 425
AfaI GTAC 3 cut(s) 832, 875, 1156
AfiI CCNNNNNNNGG 1 cut(s) 207
AgsI TTSAA 3 cut(s) 455, 604, 900
AjnI CCWGG 3 cut(s) 159, 485, 929
AluBI AGCT 6 cut(s) 152, 183, 938, 1017, 1100, 1107
AluI AGCT 6 cut(s) 152, 183, 938, 1017, 1100, 1107
Alw21I GWGCWC 3 cut(s) 17, 154, 1109
Alw26I GTCTC 3 cut(s) 185, 826, 1194
AlwI GGATC 1 cut(s) 901
AoxI GGCC 3 cut(s) 40, 436, 625
ApeKI GCWGC 6 cut(s) 21, 26, 566, 708, 935, 1172
ApoI RAATTY 2 cut(s) 247, 425
AspLEI GCGC 3 cut(s) 26, 274, 818
AspS9I GGNCC 2 cut(s) 1089, 1144
AsuC2I CCSGG 1 cut(s) 64
AsuHPI GGTGA 6 cut(s) 394, 712, 739, 797, 906, 918
AsuNHI GCTAGC 1 cut(s) 1055
AvaII GGWCC 2 cut(s) 1089, 1144
BanII GRGCYC 2 cut(s) 154, 1109
BarI GAAGNNNNNNTAC 2 cut(s) 819, 851
BauI CACGAG 1 cut(s) 780
BbsI GAAGAC 3 cut(s) 628, 794, 915
Bbv12I GWGCWC 3 cut(s) 17, 154, 1109
BbvI GCAGC 6 cut(s) 8, 13, 578, 720, 947, 1159
BccI CCATC 5 cut(s) 308, 327, 340, 413, 841
BceAI ACGGC 1 cut(s) 777
BciT130I CCWGG 3 cut(s) 161, 487, 931
BcnI CCSGG 1 cut(s) 64
BcoDI GTCTC 3 cut(s) 185, 826, 1194
BfaI CTAG 3 cut(s) 470, 1056, 1228
BfmI CTRYAG 1 cut(s) 825
BglII AGATCT 1 cut(s) 415
BisI GCNGC 7 cut(s) 22, 27, 40, 567, 709, 936, 1173
BlsI GCNGC 7 cut(s) 23, 28, 41, 568, 710, 937, 1174
Bme1390I CCNGG 4 cut(s) 64, 161, 487, 931
Bme18I GGWCC 2 cut(s) 1089, 1144
BmgT120I GGNCC 2 cut(s) 1089, 1144
BmiI GGNNCC 2 cut(s) 1145, 1200
BmrFI CCNGG 4 cut(s) 64, 161, 487, 931
BmsI GCATC 3 cut(s) 331, 484, 545
BmtI GCTAGC 1 cut(s) 1059
BpiI GAAGAC 3 cut(s) 628, 794, 915
BplI GAGNNNNNCTC 2 cut(s) 141, 173
BpmI CTGGAG 2 cut(s) 182, 796
BpuEI CTTGAG 1 cut(s) 977
BpuMI CCSGG 1 cut(s) 64
Bsa29I ATCGAT 1 cut(s) 548
BsaBI GATNNNNATC 1 cut(s) 350
BsaI GGTCTC 2 cut(s) 826, 1194
BsaJI CCNNGG 7 cut(s) 117, 173, 201, 654, 929, 930, 1050
Bsc4I CCNNNNNNNGG 1 cut(s) 207
Bse118I RCCGGY 1 cut(s) 306
Bse1I ACTGG 2 cut(s) 453, 771
Bse3DI GCAATG 3 cut(s) 622, 802, 881
Bse8I GATNNNNATC 1 cut(s) 350
BseBI CCWGG 3 cut(s) 161, 487, 931
BseCI ATCGAT 1 cut(s) 548
BseDI CCNNGG 7 cut(s) 117, 173, 201, 654, 929, 930, 1050
BseGI GGATG 3 cut(s) 338, 560, 852
BseJI GATNNNNATC 1 cut(s) 350
BseLI CCNNNNNNNGG 1 cut(s) 207
BseMI GCAATG 3 cut(s) 622, 802, 881
BseMII CTCAG 4 cut(s) 594, 1092, 1110, 1122
BseNI ACTGG 2 cut(s) 453, 771
BseRI GAGGAG 2 cut(s) 40, 144
BseXI GCAGC 6 cut(s) 8, 13, 578, 720, 947, 1159
BsgI GTGCAG 1 cut(s) 1158
Bsh1236I CGCG 1 cut(s) 818
BshFI GGCC 3 cut(s) 42, 438, 627
BshVI ATCGAT 1 cut(s) 548
BsiHKAI GWGCWC 3 cut(s) 17, 154, 1109
BsiSI CCGG 2 cut(s) 63, 307
BslI CCNNNNNNNGG 1 cut(s) 207
BsmAI GTCTC 3 cut(s) 185, 826, 1194
BsmI GAATGC 2 cut(s) 575, 585
BsnI GGCC 3 cut(s) 42, 438, 627
Bso31I GGTCTC 2 cut(s) 826, 1194
Bsp1286I GDGCHC 3 cut(s) 17, 154, 1109
Bsp1407I TGTACA 1 cut(s) 1154
Bsp143I GATC 3 cut(s) 415, 893, 1216
Bsp19I CCATGG 2 cut(s) 173, 654
BspACI CCGC 3 cut(s) 39, 81, 818
BspANI GGCC 3 cut(s) 42, 438, 627
BspCNI CTCAG 4 cut(s) 593, 1093, 1109, 1121
BspDI ATCGAT 1 cut(s) 548
BspFNI CGCG 1 cut(s) 818
BspHI TCATGA 1 cut(s) 648
BspLI GGNNCC 2 cut(s) 1145, 1200
BspOI GCTAGC 1 cut(s) 1059
BspPI GGATC 1 cut(s) 901
BspQI GCTCTTC 1 cut(s) 190
BspTNI GGTCTC 2 cut(s) 826, 1194
BsrDI GCAATG 3 cut(s) 622, 802, 881
BsrFI RCCGGY 1 cut(s) 306
BsrGI TGTACA 1 cut(s) 1154
BsrI ACTGG 2 cut(s) 453, 771
BssAI RCCGGY 1 cut(s) 306
BssECI CCNNGG 7 cut(s) 117, 173, 201, 654, 929, 930, 1050
BssMI GATC 3 cut(s) 415, 893, 1216
BssSI CACGAG 1 cut(s) 780
BssT1I CCWWGG 5 cut(s) 117, 173, 201, 654, 1050
Bst2BI CACGAG 1 cut(s) 780
Bst2UI CCWGG 3 cut(s) 161, 487, 931
Bst4CI ACNGT 4 cut(s) 98, 623, 700, 921
Bst6I CTCTTC 4 cut(s) 110, 190, 840, 957
BstAPI GCANNNNNTGC 3 cut(s) 572, 683, 887
BstAUI TGTACA 1 cut(s) 1154
BstC8I GCNNGC 5 cut(s) 436, 540, 793, 888, 1057
BstDEI CTNAG 5 cut(s) 137, 580, 1096, 1101, 1108
BstDSI CCRYGG 2 cut(s) 173, 654
BstF5I GGATG 3 cut(s) 338, 560, 852
BstFNI CGCG 1 cut(s) 818
BstHHI GCGC 3 cut(s) 26, 274, 818
BstKTI GATC 3 cut(s) 418, 896, 1219
BstMAI GTCTC 3 cut(s) 185, 826, 1194
BstMBI GATC 3 cut(s) 415, 893, 1216
BstMWI GCNNNNNNNGC 7 cut(s) 21, 45, 269, 539, 572, 683, 887
BstNI CCWGG 3 cut(s) 161, 487, 931
BstNSI RCATGY 1 cut(s) 1063
BstSCI CCNGG 4 cut(s) 62, 159, 485, 929
BstSFI CTRYAG 1 cut(s) 825
BstUI CGCG 1 cut(s) 818
BstV1I GCAGC 6 cut(s) 8, 13, 578, 720, 947, 1159
BstV2I GAAGAC 3 cut(s) 628, 794, 915
BstX2I RGATCY 2 cut(s) 415, 893
BstYI RGATCY 2 cut(s) 415, 893
Bsu15I ATCGAT 1 cut(s) 548
BsuRI GGCC 3 cut(s) 42, 438, 627
BsuTUI ATCGAT 1 cut(s) 548
BtgI CCRYGG 2 cut(s) 173, 654
BtsCI GGATG 3 cut(s) 338, 560, 852
BtsI GCAGTG 1 cut(s) 684
BtsIMutI CAGTG 2 cut(s) 684, 778
Cac8I GCNNGC 5 cut(s) 436, 540, 793, 888, 1057
CciI TCATGA 1 cut(s) 648
CfoI GCGC 3 cut(s) 26, 274, 818
Cfr10I RCCGGY 1 cut(s) 306
Cfr13I GGNCC 2 cut(s) 1089, 1144
ClaI ATCGAT 1 cut(s) 548
Csp6I GTAC 3 cut(s) 831, 874, 1155
CspCI CAANNNNNGTGG 2 cut(s) 604, 639
CviQI GTAC 3 cut(s) 831, 874, 1155
DdeI CTNAG 5 cut(s) 137, 580, 1096, 1101, 1108
DpnI GATC 3 cut(s) 417, 895, 1218
DpnII GATC 3 cut(s) 415, 893, 1216
Eam1104I CTCTTC 4 cut(s) 110, 190, 840, 957
EarI CTCTTC 4 cut(s) 110, 190, 840, 957
EciI GGCGGA 1 cut(s) 70
Ecl136II GAGCTC 2 cut(s) 152, 1107
Eco130I CCWWGG 5 cut(s) 117, 173, 201, 654, 1050
Eco147I AGGCCT 1 cut(s) 438
Eco24I GRGCYC 2 cut(s) 154, 1109
Eco31I GGTCTC 2 cut(s) 826, 1194
Eco32I GATATC 1 cut(s) 732
Eco47I GGWCC 2 cut(s) 1089, 1144
Eco53kI GAGCTC 2 cut(s) 152, 1107
EcoICRI GAGCTC 2 cut(s) 152, 1107
EcoRII CCWGG 3 cut(s) 159, 485, 929
EcoRV GATATC 1 cut(s) 732
EcoT14I CCWWGG 5 cut(s) 117, 173, 201, 654, 1050
EcoT22I ATGCAT 1 cut(s) 499
EcoT38I GRGCYC 2 cut(s) 154, 1109
ErhI CCWWGG 5 cut(s) 117, 173, 201, 654, 1050
FalI AAGNNNNNCTT 2 cut(s) 213, 245
Fnu4HI GCNGC 7 cut(s) 22, 27, 40, 567, 709, 936, 1173
FokI GGATG 3 cut(s) 345, 567, 859
FriOI GRGCYC 2 cut(s) 154, 1109
Fsp4HI GCNGC 7 cut(s) 22, 27, 40, 567, 709, 936, 1173
FspBI CTAG 3 cut(s) 470, 1056, 1228
GlaI GCGC 3 cut(s) 25, 273, 817
GluI GCNGC 7 cut(s) 22, 27, 40, 567, 709, 936, 1173
GsuI CTGGAG 2 cut(s) 182, 796
HaeIII GGCC 3 cut(s) 42, 438, 627
HapII CCGG 2 cut(s) 63, 307
HhaI GCGC 3 cut(s) 26, 274, 818
Hin6I GCGC 3 cut(s) 24, 272, 816
HinP1I GCGC 3 cut(s) 24, 272, 816
HinfI GANTC 5 cut(s) 87, 102, 133, 193, 1149
HpaII CCGG 2 cut(s) 63, 307
HphI GGTGA 6 cut(s) 394, 712, 739, 797, 906, 918
Hpy166II GTNNAC 1 cut(s) 101
Hpy188I TCNGA 3 cut(s) 190, 1111, 1148
Hpy188III TCNNGA 5 cut(s) 389, 649, 782, 956, 1220
Hpy8I GTNNAC 1 cut(s) 101
Hpy99I CGWCG 2 cut(s) 59, 856
HpyAV CCTTC 4 cut(s) 286, 395, 725, 971
HpyCH4III ACNGT 4 cut(s) 98, 623, 700, 921
HpyCH4IV ACGT 2 cut(s) 1122, 1182
HpyF10VI GCNNNNNNNGC 7 cut(s) 21, 45, 269, 539, 572, 683, 887
HpyF3I CTNAG 5 cut(s) 137, 580, 1096, 1101, 1108
HpySE526I ACGT 2 cut(s) 1122, 1182
HspAI GCGC 3 cut(s) 24, 272, 816
Kzo9I GATC 3 cut(s) 415, 893, 1216
LguI GCTCTTC 1 cut(s) 190
LmnI GCTCC 4 cut(s) 53, 149, 157, 1204
Lsp1109I GCAGC 6 cut(s) 8, 13, 578, 720, 947, 1159
LweI GCATC 3 cut(s) 331, 484, 545
MaeI CTAG 3 cut(s) 470, 1056, 1228
MaeII ACGT 2 cut(s) 1122, 1182
MaeIII GTNAC 4 cut(s) 124, 782, 912, 1165
MalI GATC 3 cut(s) 417, 895, 1218
MboI GATC 3 cut(s) 415, 893, 1216
MflI RGATCY 2 cut(s) 415, 893
MhlI GDGCHC 3 cut(s) 17, 154, 1109
MluCI AATT 2 cut(s) 247, 425
MlyI GAGTC 3 cut(s) 81, 96, 187
MmeI TCCRAC 3 cut(s) 127, 951, 1067
Mph1103I ATGCAT 1 cut(s) 499
MseI TTAA 1 cut(s) 630
MslI CAYNNNNRTG 4 cut(s) 327, 374, 647, 653
MspA1I CMGCKG 2 cut(s) 938, 1100
MspI CCGG 2 cut(s) 63, 307
MspR9I CCNGG 4 cut(s) 64, 161, 487, 931
Mva1269I GAATGC 2 cut(s) 575, 585
MvaI CCWGG 3 cut(s) 161, 487, 931
MvnI CGCG 1 cut(s) 818
MwoI GCNNNNNNNGC 7 cut(s) 21, 45, 269, 539, 572, 683, 887
NciI CCSGG 1 cut(s) 64
NcoI CCATGG 2 cut(s) 173, 654
NdeII GATC 3 cut(s) 415, 893, 1216
NheI GCTAGC 1 cut(s) 1055
NlaIV GGNNCC 2 cut(s) 1145, 1200
NmeAIII GCCGAG 1 cut(s) 69
NmuCI GTSAC 3 cut(s) 124, 782, 912
NsiI ATGCAT 1 cut(s) 499
NspI RCATGY 1 cut(s) 1063
PagI TCATGA 1 cut(s) 648
PasI CCCWGGG 1 cut(s) 930
PceI AGGCCT 1 cut(s) 438
PciSI GCTCTTC 1 cut(s) 190
PctI GAATGC 2 cut(s) 575, 585
PfeI GAWTC 2 cut(s) 133, 1149
PflMI CCANNNNNTGG 1 cut(s) 207
PfoI TCCNGGA 3 cut(s) 62, 159, 485
PkrI GCNGC 7 cut(s) 23, 28, 41, 568, 710, 937, 1174
PleI GAGTC 3 cut(s) 81, 96, 187
PpsI GAGTC 3 cut(s) 81, 96, 187
PsiI TTATAA 1 cut(s) 278
Psp124BI GAGCTC 2 cut(s) 154, 1109
Psp6I CCWGG 3 cut(s) 159, 485, 929
PspGI CCWGG 3 cut(s) 159, 485, 929
PspN4I GGNNCC 2 cut(s) 1145, 1200
PspPI GGNCC 2 cut(s) 1089, 1144
PsuI RGATCY 2 cut(s) 415, 893
PvuII CAGCTG 2 cut(s) 938, 1100
RsaI GTAC 3 cut(s) 832, 875, 1156
RsaNI GTAC 3 cut(s) 831, 874, 1155
RseI CAYNNNNRTG 4 cut(s) 327, 374, 647, 653
SacI GAGCTC 2 cut(s) 154, 1109
SapI GCTCTTC 1 cut(s) 190
SaqAI TTAA 1 cut(s) 630
SatI GCNGC 7 cut(s) 22, 27, 40, 567, 709, 936, 1173
Sau3AI GATC 3 cut(s) 415, 893, 1216
Sau96I GGNCC 2 cut(s) 1089, 1144
SchI GAGTC 3 cut(s) 81, 96, 187
ScrFI CCNGG 4 cut(s) 64, 161, 487, 931
SduI GDGCHC 3 cut(s) 17, 154, 1109
SfaNI GCATC 3 cut(s) 331, 484, 545
SfcI CTRYAG 1 cut(s) 825
SinI GGWCC 2 cut(s) 1089, 1144
SmiMI CAYNNNNRTG 4 cut(s) 327, 374, 647, 653
SmlI CTYRAG 1 cut(s) 956
SmoI CTYRAG 1 cut(s) 956
Sse9I AATT 2 cut(s) 247, 425
SseBI AGGCCT 1 cut(s) 438
SsiI CCGC 3 cut(s) 39, 81, 818
SspMI CTAG 3 cut(s) 470, 1056, 1228
SstI GAGCTC 2 cut(s) 154, 1109
StuI AGGCCT 1 cut(s) 438
StyD4I CCNGG 4 cut(s) 62, 159, 485, 929
StyI CCWWGG 5 cut(s) 117, 173, 201, 654, 1050
TaaI ACNGT 4 cut(s) 98, 623, 700, 921
TaiI ACGT 2 cut(s) 1125, 1185
TaqI TCGA 1 cut(s) 548
TasI AATT 2 cut(s) 247, 425
TatI WGTACW 2 cut(s) 873, 1154
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 2 cut(s) 133, 1149
Tru1I TTAA 1 cut(s) 630
Tru9I TTAA 1 cut(s) 630
TscAI CASTG 2 cut(s) 684, 778
TseFI GTSAC 3 cut(s) 124, 782, 912
TseI GCWGC 6 cut(s) 21, 26, 566, 708, 935, 1172
Tsp45I GTSAC 3 cut(s) 124, 782, 912
TspDTI ATGAA 4 cut(s) 528, 583, 631, 1008
TspGWI ACGGA 2 cut(s) 43, 426
TspRI CASTG 2 cut(s) 684, 778
Van91I CCANNNNNTGG 1 cut(s) 207
VpaK11BI GGWCC 2 cut(s) 1089, 1144
XapI RAATTY 2 cut(s) 247, 425
XceI RCATGY 1 cut(s) 1063
XspI CTAG 3 cut(s) 470, 1056, 1228
Zsp2I ATGCAT 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.