Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0011082

Physical Location & Seq

Genomic Coordinates Reverse (-)

11488482 .. 11490789

Gene Structure 2308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g15750.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGTCGTGCTGCTTGTCTTGCTGCGCCGCTTCCACCTGCGGCCTGTGCGGCTCTGTGGCCTCTGGGATCTCCAGCAAATCGGCTAGGCTTGCTTACTGCGGCCTCTTCGGGCTCTCCCTGATCGTGTCTTGGATTCTCAGAGAAGTTGGAGCTCCTCTCTTGGAGAAAATCCCATGGATAAGCTCTTCTGAGACTCACACCAAGGAGTGGTATCAAACAGAAGCGGTTCTTCGTGTGAGCATGGGGAATTTCTTGTTTTTCGCAGCATTTGCGCTTATAATGATTGGAGTAAAGGACCAAAATGACAGACGAGATTCCTGGCATCATGGTGGATGGATTGCCAAGATGGTGGTATGGCTTTTGCTTGTCGTTCTCATGTTTTTCATGCCAGACATTGTCATTACAATCTATGGTGTTGTATCAAAATTTGGGGCAGGCTTATTTTTACTGGTTCAAGTCATTATATTATTAGACTGTACTCACTCATGGAATGATGCATGGGTGGAAAAAGATGAGCAAAAATGGTATATTGCATTGCTTGTCGTATCAATTGTATGCTACCTTGCAGCATTTGCGTTCTCAGGCGTTCTGTTCATTTGGTTCAACCCTTCTGGTGAAGATTGTGGCCTCAATATCTTCTTCATTGTCATGACAATGATTCTCGCATTTGGATTTGCAGTTATTGCGTTACACCCGAAGGTGAATGGCAGCCTCCTCCCTGCTTCGGTGATATCTGTTTATAGTGCTTATGTGTGCTACACAGCTCTTTCCAGTGAACCTCGTGGCTATGCTTGCAATGGTCTTCACCATTCCAAAGCAGTCTCCCTGAGTACCCTCCTTCTTGGGATGGCAACGACTGTTCTTTCAGTTTTGTACTCTGCCCTTCGTGCTGGATCATCAACAAATTTTCTATCACCACCATCTTCACCCAGGGGAGGTGCAGCTGAAAGGACACCTCTTCTTGACGGCAAAGAGTTGGAGGAAGCGAAAGAGAAAAATGACAAAGAAGCGAAACCTGTTAGTTATTCCTATACGTTTTTCCACCTGATATTTGCCTTGGCTAGCATGTATTCAGCCATGCTGCTTTCGGGTTGGACCAGCTCATTGGAGAGCTCAGATCTCATTGACGTTGGCTGGACATCAGTTTGGGTCAGAATCTGCACAGAATGGGTTACTGCTGCACTATATGTTTGGTCCCTCATTGCTCCTATACTTTTCCCTGATCGTGAGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015194 GO:0015318 GO:0015711 GO:0015804 GO:0015807 GO:0015825 GO:0015849 GO:0022857 GO:0022889 GO:0032329 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098655 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Serinc

Protein Analysis

412

Amino Acids

45.17

Weight (kDa)

5.91

Isoelectric Point (pI)

31.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06170
fragaria_vesca	FvH4_4g14410 FvH4_4g14410
malus_domestica	MD13G1182500.v1.1 MD16G1183000.v1.1
prunus_persica	Prupe.1G150400_v2.0.a1 Prupe.1G150400_v2.0.a1 Prupe.1G150400_v2.0.a1
pyrus_communis	pycom13g15750 pycom16g15360
rosa_chinensis	RchiOBHm_Chr4g0418471
rosa_laevigata	RLG00000007861
rosa_multiflora	Rmu_sc0001879.1_g000038 Rmu_sc0042012.1_g000001
rosa_roxburghii	Rroxscaffold_5G00361710
rosa_rugosa	Rorug04G0153600
rosa_samantha	Rh4AG214700 Rh4BG215700 Rh4CG226300
rosa_wichuraiana	Rw0G010050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	278
AarI	CACCTGC	1 cut(s)	44
Acc36I	ACCTGC	1 cut(s)	44
AccB7I	CCANNNNNTGG	1 cut(s)	207
AciI	CCGC	5 cut(s)	27, 39, 48, 99, 224
AclWI	GGATC	2 cut(s)	74, 901
AcsI	RAATTY	3 cut(s)	247, 425, 904
AfaI	GTAC	3 cut(s)	478, 832, 875
AfiI	CCNNNNNNNGG	3 cut(s)	207, 724, 935
AgsI	TTSAA	2 cut(s)	455, 604
AjnI	CCWGG	2 cut(s)	317, 929
AluBI	AGCT	6 cut(s)	152, 183, 764, 944, 1101, 1113
AluI	AGCT	6 cut(s)	152, 183, 764, 944, 1101, 1113
Alw21I	GWGCWC	2 cut(s)	154, 1115
Alw26I	GTCTC	2 cut(s)	185, 826
AlwI	GGATC	2 cut(s)	74, 901
AlwNI	CAGNNNCTG	1 cut(s)	1158
AoxI	GGCC	4 cut(s)	40, 57, 100, 625
ApeKI	GCWGC	8 cut(s)	9, 21, 263, 566, 708, 941, 1081, 1178
ApoI	RAATTY	3 cut(s)	247, 425, 904
Asp700I	GAANNNNTTC	1 cut(s)	225
AspLEI	GCGC	2 cut(s)	26, 274
AspS9I	GGNCC	3 cut(s)	295, 1095, 1194
AsuHPI	GGTGA	6 cut(s)	626, 712, 739, 797, 906, 918
AsuNHI	GCTAGC	1 cut(s)	1061
AvaII	GGWCC	3 cut(s)	295, 1095, 1194
BanII	GRGCYC	3 cut(s)	114, 154, 1115
BauI	CACGAG	1 cut(s)	780
BbsI	GAAGAC	1 cut(s)	794
Bbv12I	GWGCWC	2 cut(s)	154, 1115
BbvI	GCAGC	7 cut(s)	8, 275, 578, 720, 953, 1068, 1165
BccI	CCATC	4 cut(s)	327, 340, 841, 928
BceAI	ACGGC	1 cut(s)	982
BciT130I	CCWGG	2 cut(s)	319, 931
BcoDI	GTCTC	2 cut(s)	185, 826
BfaI	CTAG	3 cut(s)	84, 1062, 1234
BfuAI	ACCTGC	1 cut(s)	44
BglI	GCCNNNNNGGC	1 cut(s)	48
BglII	AGATCT	1 cut(s)	1117
Bme1390I	CCNGG	2 cut(s)	319, 931
Bme18I	GGWCC	3 cut(s)	295, 1095, 1194
BmgT120I	GGNCC	3 cut(s)	295, 1095, 1194
BmiI	GGNNCC	1 cut(s)	1196
BmrFI	CCNGG	2 cut(s)	319, 931
BmsI	GCATC	2 cut(s)	331, 484
BmtI	GCTAGC	1 cut(s)	1065
BpiI	GAAGAC	1 cut(s)	794
BplI	GAGNNNNNCTC	2 cut(s)	141, 173
BpmI	CTGGAG	1 cut(s)	55
BsaJI	CCNNGG	5 cut(s)	173, 201, 929, 930, 1056
Bsc4I	CCNNNNNNNGG	3 cut(s)	207, 724, 935
Bse1I	ACTGG	2 cut(s)	453, 771
Bse3DI	GCAATG	3 cut(s)	533, 802, 1200
BseBI	CCWGG	2 cut(s)	319, 931
BseDI	CCNNGG	5 cut(s)	173, 201, 929, 930, 1056
BseGI	GGATG	2 cut(s)	338, 852
BseLI	CCNNNNNNNGG	3 cut(s)	207, 724, 935
BseMI	GCAATG	3 cut(s)	533, 802, 1200
BseMII	CTCAG	5 cut(s)	151, 180, 594, 818, 1128
BseNI	ACTGG	2 cut(s)	453, 771
BseRI	GAGGAG	2 cut(s)	144, 704
BseXI	GCAGC	7 cut(s)	8, 275, 578, 720, 953, 1068, 1165
BsgI	GTGCAG	3 cut(s)	960, 1144, 1164
BshFI	GGCC	4 cut(s)	42, 59, 102, 627
BsiHKAI	GWGCWC	2 cut(s)	154, 1115
BslFI	GGGAC	1 cut(s)	1180
BslI	CCNNNNNNNGG	3 cut(s)	207, 724, 935
BsmAI	GTCTC	2 cut(s)	185, 826
BsmFI	GGGAC	1 cut(s)	1180
BsnI	GGCC	4 cut(s)	42, 59, 102, 627
Bsp1286I	GDGCHC	3 cut(s)	114, 154, 1115
Bsp143I	GATC	5 cut(s)	66, 120, 893, 1117, 1222
Bsp19I	CCATGG	1 cut(s)	173
BspACI	CCGC	5 cut(s)	27, 39, 48, 99, 224
BspANI	GGCC	4 cut(s)	42, 59, 102, 627
BspCNI	CTCAG	5 cut(s)	150, 181, 593, 819, 1127
BspHI	TCATGA	1 cut(s)	648
BspLI	GGNNCC	1 cut(s)	1196
BspMI	ACCTGC	1 cut(s)	44
BspOI	GCTAGC	1 cut(s)	1065
BspPI	GGATC	2 cut(s)	74, 901
BspQI	GCTCTTC	1 cut(s)	190
BsrDI	GCAATG	3 cut(s)	533, 802, 1200
BsrI	ACTGG	2 cut(s)	453, 771
BssECI	CCNNGG	5 cut(s)	173, 201, 929, 930, 1056
BssMI	GATC	5 cut(s)	66, 120, 893, 1117, 1222
BssSI	CACGAG	1 cut(s)	780
BssT1I	CCWWGG	3 cut(s)	173, 201, 1056
Bst2BI	CACGAG	1 cut(s)	780
Bst2UI	CCWGG	2 cut(s)	319, 931
Bst4CI	ACNGT	2 cut(s)	476, 859
Bst6I	CTCTTC	3 cut(s)	110, 190, 963
BstAPI	GCANNNNNTGC	3 cut(s)	269, 572, 683
BstC8I	GCNNGC	4 cut(s)	90, 436, 793, 1063
BstDEI	CTNAG	5 cut(s)	137, 189, 580, 827, 1114
BstDSI	CCRYGG	1 cut(s)	173
BstF5I	GGATG	2 cut(s)	338, 852
BstHHI	GCGC	2 cut(s)	26, 274
BstKTI	GATC	5 cut(s)	69, 123, 896, 1120, 1225
BstMAI	GTCTC	2 cut(s)	185, 826
BstMBI	GATC	5 cut(s)	66, 120, 893, 1117, 1222
BstMWI	GCNNNNNNNGC	9 cut(s)	18, 45, 48, 89, 269, 572, 683, 792, 887
BstNI	CCWGG	2 cut(s)	319, 931
BstNSI	RCATGY	1 cut(s)	1069
BstSCI	CCNGG	2 cut(s)	317, 929
BstV1I	GCAGC	7 cut(s)	8, 275, 578, 720, 953, 1068, 1165
BstV2I	GAAGAC	1 cut(s)	794
BstX2I	RGATCY	2 cut(s)	66, 1117
BstXI	CCANNNNNNTGG	2 cut(s)	349, 1105
BstYI	RGATCY	2 cut(s)	66, 1117
BsuRI	GGCC	4 cut(s)	42, 59, 102, 627
BtgI	CCRYGG	1 cut(s)	173
BtsCI	GGATG	2 cut(s)	338, 852
BtsIMutI	CAGTG	1 cut(s)	778
BveI	ACCTGC	1 cut(s)	44
Cac8I	GCNNGC	4 cut(s)	90, 436, 793, 1063
CaiI	CAGNNNCTG	1 cut(s)	1158
CciI	TCATGA	1 cut(s)	648
CfoI	GCGC	2 cut(s)	26, 274
Cfr13I	GGNCC	3 cut(s)	295, 1095, 1194
Csp6I	GTAC	3 cut(s)	477, 831, 874
CviQI	GTAC	3 cut(s)	477, 831, 874
DdeI	CTNAG	5 cut(s)	137, 189, 580, 827, 1114
DpnI	GATC	5 cut(s)	68, 122, 895, 1119, 1224
DpnII	GATC	5 cut(s)	66, 120, 893, 1117, 1222
Eam1104I	CTCTTC	3 cut(s)	110, 190, 963
EarI	CTCTTC	3 cut(s)	110, 190, 963
Ecl136II	GAGCTC	2 cut(s)	152, 1113
Eco130I	CCWWGG	3 cut(s)	173, 201, 1056
Eco24I	GRGCYC	3 cut(s)	114, 154, 1115
Eco32I	GATATC	1 cut(s)	732
Eco47I	GGWCC	3 cut(s)	295, 1095, 1194
Eco53kI	GAGCTC	2 cut(s)	152, 1113
EcoICRI	GAGCTC	2 cut(s)	152, 1113
EcoRII	CCWGG	2 cut(s)	317, 929
EcoRV	GATATC	1 cut(s)	732
EcoT14I	CCWWGG	3 cut(s)	173, 201, 1056
EcoT22I	ATGCAT	1 cut(s)	499
EcoT38I	GRGCYC	3 cut(s)	114, 154, 1115
ErhI	CCWWGG	3 cut(s)	173, 201, 1056
FalI	AAGNNNNNCTT	2 cut(s)	213, 245
FaqI	GGGAC	1 cut(s)	1180
FokI	GGATG	2 cut(s)	345, 859
FriOI	GRGCYC	3 cut(s)	114, 154, 1115
FspBI	CTAG	3 cut(s)	84, 1062, 1234
GlaI	GCGC	2 cut(s)	25, 273
GsuI	CTGGAG	1 cut(s)	55
HaeIII	GGCC	4 cut(s)	42, 59, 102, 627
HhaI	GCGC	2 cut(s)	26, 274
Hin6I	GCGC	2 cut(s)	24, 272
HinP1I	GCGC	2 cut(s)	24, 272
HinfI	GANTC	5 cut(s)	133, 193, 314, 658, 1155
HphI	GGTGA	6 cut(s)	626, 712, 739, 797, 906, 918
Hpy166II	GTNNAC	1 cut(s)	776
Hpy188I	TCNGA	4 cut(s)	140, 190, 1117, 1154
Hpy188III	TCNNGA	3 cut(s)	649, 962, 1226
Hpy8I	GTNNAC	1 cut(s)	776
HpyAV	CCTTC	4 cut(s)	618, 691, 848, 893
HpyCH4III	ACNGT	2 cut(s)	476, 859
HpyCH4IV	ACGT	2 cut(s)	1034, 1128
HpyCH4V	TGCA	8 cut(s)	497, 533, 566, 677, 795, 941, 1161, 1181
HpyF10VI	GCNNNNNNNGC	9 cut(s)	18, 45, 48, 89, 269, 572, 683, 792, 887
HpyF3I	CTNAG	5 cut(s)	137, 189, 580, 827, 1114
HpySE526I	ACGT	2 cut(s)	1034, 1128
HspAI	GCGC	2 cut(s)	24, 272
Kzo9I	GATC	5 cut(s)	66, 120, 893, 1117, 1222
LguI	GCTCTTC	1 cut(s)	190
LmnI	GCTCC	3 cut(s)	149, 157, 1210
Lsp1109I	GCAGC	7 cut(s)	8, 275, 578, 720, 953, 1068, 1165
LweI	GCATC	2 cut(s)	331, 484
MaeI	CTAG	3 cut(s)	84, 1062, 1234
MaeII	ACGT	2 cut(s)	1034, 1128
MaeIII	GTNAC	2 cut(s)	687, 1171
MalI	GATC	5 cut(s)	68, 122, 895, 1119, 1224
MboI	GATC	5 cut(s)	66, 120, 893, 1117, 1222
MboII	GAAGA	9 cut(s)	97, 177, 221, 628, 629, 631, 794, 915, 950
MfeI	CAATTG	1 cut(s)	549
MflI	RGATCY	2 cut(s)	66, 1117
MhlI	GDGCHC	3 cut(s)	114, 154, 1115
MluCI	AATT	4 cut(s)	247, 425, 549, 904
MlyI	GAGTC	1 cut(s)	187
MmeI	TCCRAC	3 cut(s)	127, 957, 1073
Mph1103I	ATGCAT	1 cut(s)	499
MroXI	GAANNNNTTC	1 cut(s)	225
MslI	CAYNNNNRTG	3 cut(s)	327, 647, 653
MspA1I	CMGCKG	1 cut(s)	944
MspR9I	CCNGG	2 cut(s)	319, 931
MunI	CAATTG	1 cut(s)	549
MvaI	CCWGG	2 cut(s)	319, 931
MwoI	GCNNNNNNNGC	9 cut(s)	18, 45, 48, 89, 269, 572, 683, 792, 887
NcoI	CCATGG	1 cut(s)	173
NdeII	GATC	5 cut(s)	66, 120, 893, 1117, 1222
NheI	GCTAGC	1 cut(s)	1061
NlaIV	GGNNCC	1 cut(s)	1196
NsiI	ATGCAT	1 cut(s)	499
NspI	RCATGY	1 cut(s)	1069
PagI	TCATGA	1 cut(s)	648
PaqCI	CACCTGC	1 cut(s)	44
PasI	CCCWGGG	1 cut(s)	930
PciSI	GCTCTTC	1 cut(s)	190
PdmI	GAANNNNTTC	1 cut(s)	225
PfeI	GAWTC	4 cut(s)	133, 314, 658, 1155
PflFI	GACNNNGTC	1 cut(s)	395
PflMI	CCANNNNNTGG	1 cut(s)	207
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
PsiI	TTATAA	1 cut(s)	278
Psp124BI	GAGCTC	2 cut(s)	154, 1115
Psp6I	CCWGG	2 cut(s)	317, 929
PspGI	CCWGG	2 cut(s)	317, 929
PspN4I	GGNNCC	1 cut(s)	1196
PspPI	GGNCC	3 cut(s)	295, 1095, 1194
PstNI	CAGNNNCTG	1 cut(s)	1158
PsuI	RGATCY	2 cut(s)	66, 1117
PsyI	GACNNNGTC	1 cut(s)	395
PvuII	CAGCTG	1 cut(s)	944
RsaI	GTAC	3 cut(s)	478, 832, 875
RsaNI	GTAC	3 cut(s)	477, 831, 874
RseI	CAYNNNNRTG	3 cut(s)	327, 647, 653
SacI	GAGCTC	2 cut(s)	154, 1115
SapI	GCTCTTC	1 cut(s)	190
Sau3AI	GATC	5 cut(s)	66, 120, 893, 1117, 1222
Sau96I	GGNCC	3 cut(s)	295, 1095, 1194
SchI	GAGTC	1 cut(s)	187
ScrFI	CCNGG	2 cut(s)	319, 931
SduI	GDGCHC	3 cut(s)	114, 154, 1115
SfaNI	GCATC	2 cut(s)	331, 484
SinI	GGWCC	3 cut(s)	295, 1095, 1194
SmiMI	CAYNNNNRTG	3 cut(s)	327, 647, 653
Sse9I	AATT	4 cut(s)	247, 425, 549, 904
SsiI	CCGC	5 cut(s)	27, 39, 48, 99, 224
SspMI	CTAG	3 cut(s)	84, 1062, 1234
SstI	GAGCTC	2 cut(s)	154, 1115
StyD4I	CCNGG	2 cut(s)	317, 929
StyI	CCWWGG	3 cut(s)	173, 201, 1056
TaaI	ACNGT	2 cut(s)	476, 859
TaiI	ACGT	2 cut(s)	1037, 1131
TasI	AATT	4 cut(s)	247, 425, 549, 904
TatI	WGTACW	2 cut(s)	476, 873
TauI	GCSGC	4 cut(s)	29, 42, 51, 102
TfiI	GAWTC	4 cut(s)	133, 314, 658, 1155
TscAI	CASTG	1 cut(s)	778
TseI	GCWGC	8 cut(s)	9, 21, 263, 566, 708, 941, 1081, 1178
TspDTI	ATGAA	3 cut(s)	373, 583, 631
TspRI	CASTG	1 cut(s)	778
Tth111I	GACNNNGTC	1 cut(s)	395
Van91I	CCANNNNNTGG	1 cut(s)	207
VpaK11BI	GGWCC	3 cut(s)	295, 1095, 1194
XapI	RAATTY	3 cut(s)	247, 425, 904
XceI	RCATGY	1 cut(s)	1069
XmnI	GAANNNNTTC	1 cut(s)	225
XspI	CTAG	3 cut(s)	84, 1062, 1234
Zsp2I	ATGCAT	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.