Rroxscaffold_5G00361710

Serine incorporator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0011082
Physical Location & Seq
Forward (+)
42428777 .. 42433425
4649 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00361710.1

Sequence Viewer

Length: 1098 bp
ATGTGCGGTGGCGGCTTTGACTATGGTGACAACGGTAGTATTGTGGAGGAGGGTGACTTCTCACCTAGATCGAGGATAAGCTCTTCCGAGACTCACACCAAGGCATGGTATCAAATACAAGCGGTTCTTCGGGTGAGCATGGGGAATTTCTTGTTTTTTGCTATACTTGCGCTTATAATGATTGGTGTGAAGGATCGAAATGACCGGCGAGATGGCTGGCACCATGGTGGATGGATTGCCAAGATGGTCATCTGGCTTTTGCTTGTCATTCTCATGTTTTTTCTTCCAGACATTGTCATCACAATCTACGGAGATATATCAAAATTTGGGGCAGGCCTGTTTTTACTGGTTCAAGTGATTATCTTACTAGACTTTACTCACTCCTGGAATGATGCTTGGGTGGAGAAAGATGAACAAAAATGGTATATCGCTTTGCTTGCTATATCAATTGGGTGCTATATTGCAGCATTTGTGTTCTTAGGCATTCTGTTCATTTGGTTCAATCCCTCTGGCAATGACTGTGGCCTTAATGTCTTCTTCATTGTCATGACCATGATTCTGGCATTTGCATTTGCAGTGATTGCATTACACCCAACGGTGAATGGCAGCCTCCTTCCTGCTTCTGTTATATCAGTATATTGTGCTTATGTGTGCTACACGGCTCTTTCCTGTGAGCCTGTTGGCTATGCTTGCAATGGTCTTCACCACTCCAGCGCGGTCTCTTTTAGTACTACTCTTCTTGGGATGGTGACGACCATTCTTTCAGTTCTGTACTCTGCATTACGTGCTGGATCTTCAACAACTTTTCTGTCACCACCGTCTTCACCCAGGACAGAGTTGGAAGAAGGGAAAGAAAAGAATGAAAAAGAAGCACAACCTGTCAGCTATTCCTATACATTTTTCCACCTGATATTTGCCTTGGCTAGCATGTATTCAGCCATGCTTCTTTCGGGTTGGACCAACACATCAGAGAGCTCAGACCTTATAGACGTTGGCTGGACATCAGTTTGGGTGCGAATCTGCACAGAGTGGGTTACTGCTGCACTATATGTTTGGTCCCTTGTAGCTCCTTTACTTTTCCCAGACCGCGAGTTCTAG

Protein Analysis

365

Amino Acids

40.57

Weight (kDa)

5.11

Isoelectric Point (pI)

34.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serinc PF03348 30 - 363 9.6e-104 Serine incorporator (Serinc)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 176
AccB1I GGYRCC 1 cut(s) 219
AccB7I CCANNNNNTGG 1 cut(s) 105
AccII CGCG 2 cut(s) 716, 1089
AciI CCGC 5 cut(s) 6, 12, 122, 716, 1087
AclWI GGATC 2 cut(s) 201, 799
AcsI RAATTY 2 cut(s) 145, 323
AdeI CACNNNGTG 1 cut(s) 1029
AfaI GTAC 2 cut(s) 730, 773
AfiI CCNNNNNNNGG 1 cut(s) 105
AgsI TTSAA 3 cut(s) 353, 502, 798
AjnI CCWGG 2 cut(s) 383, 827
AleI CACNNNNGTG 1 cut(s) 225
AluBI AGCT 4 cut(s) 81, 885, 975, 1067
AluI AGCT 4 cut(s) 81, 885, 975, 1067
Alw21I GWGCWC 1 cut(s) 977
Alw26I GTCTC 2 cut(s) 83, 724
AlwI GGATC 2 cut(s) 201, 799
AoxI GGCC 2 cut(s) 334, 523
ApeKI GCWGC 3 cut(s) 464, 606, 1040
ApoI RAATTY 2 cut(s) 145, 323
AspLEI GCGC 2 cut(s) 172, 716
AspS9I GGNCC 2 cut(s) 957, 1056
AsuHPI GGTGA 9 cut(s) 38, 54, 65, 145, 610, 695, 760, 804, 816
AsuNHI GCTAGC 1 cut(s) 923
AvaII GGWCC 2 cut(s) 957, 1056
BanI GGYRCC 1 cut(s) 219
BanII GRGCYC 1 cut(s) 977
BbsI GAAGAC 3 cut(s) 526, 692, 813
Bbv12I GWGCWC 1 cut(s) 977
BbvI GCAGC 3 cut(s) 476, 618, 1027
BccI CCATC 4 cut(s) 206, 225, 238, 739
BceAI ACGGC 1 cut(s) 675
BciT130I CCWGG 2 cut(s) 385, 829
BcoDI GTCTC 2 cut(s) 83, 724
BfaI CTAG 4 cut(s) 66, 368, 924, 1096
BisI GCNGC 4 cut(s) 13, 465, 607, 1041
BlsI GCNGC 4 cut(s) 14, 466, 608, 1042
BmcAI AGTACT 1 cut(s) 730
Bme1390I CCNGG 2 cut(s) 385, 829
Bme18I GGWCC 2 cut(s) 957, 1056
BmgT120I GGNCC 2 cut(s) 957, 1056
BmiI GGNNCC 2 cut(s) 221, 1058
BmrFI CCNGG 2 cut(s) 385, 829
BmsI GCATC 1 cut(s) 382
BmtI GCTAGC 1 cut(s) 927
BpiI GAAGAC 3 cut(s) 526, 692, 813
BpmI CTGGAG 1 cut(s) 694
BsaAI YACGTR 1 cut(s) 785
BsaBI GATNNNNATC 1 cut(s) 248
BsaI GGTCTC 1 cut(s) 724
BsaJI CCNNGG 4 cut(s) 99, 223, 827, 918
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse118I RCCGGY 1 cut(s) 204
Bse1I ACTGG 1 cut(s) 351
Bse3DI GCAATG 2 cut(s) 520, 700
Bse8I GATNNNNATC 1 cut(s) 248
BseBI CCWGG 2 cut(s) 385, 829
BseDI CCNNGG 4 cut(s) 99, 223, 827, 918
BseGI GGATG 2 cut(s) 236, 750
BseJI GATNNNNATC 1 cut(s) 248
BseLI CCNNNNNNNGG 1 cut(s) 105
BseMI GCAATG 2 cut(s) 520, 700
BseMII CTCAG 1 cut(s) 990
BseNI ACTGG 1 cut(s) 351
BseRI GAGGAG 1 cut(s) 62
BseXI GCAGC 3 cut(s) 476, 618, 1027
BsgI GTGCAG 2 cut(s) 1006, 1026
Bsh1236I CGCG 2 cut(s) 716, 1089
BshFI GGCC 2 cut(s) 336, 525
BshNI GGYRCC 1 cut(s) 219
BsiHKAI GWGCWC 1 cut(s) 977
BsiSI CCGG 1 cut(s) 205
BslFI GGGAC 1 cut(s) 1042
BslI CCNNNNNNNGG 1 cut(s) 105
BsmAI GTCTC 2 cut(s) 83, 724
BsmFI GGGAC 1 cut(s) 1042
BsmI GAATGC 1 cut(s) 483
BsnI GGCC 2 cut(s) 336, 525
Bso31I GGTCTC 1 cut(s) 724
Bsp1286I GDGCHC 1 cut(s) 977
Bsp143I GATC 3 cut(s) 68, 193, 791
Bsp19I CCATGG 1 cut(s) 223
BspACI CCGC 5 cut(s) 6, 12, 122, 716, 1087
BspANI GGCC 2 cut(s) 336, 525
BspCNI CTCAG 1 cut(s) 989
BspFNI CGCG 2 cut(s) 716, 1089
BspHI TCATGA 1 cut(s) 546
BspLI GGNNCC 2 cut(s) 221, 1058
BspOI GCTAGC 1 cut(s) 927
BspPI GGATC 2 cut(s) 201, 799
BspQI GCTCTTC 1 cut(s) 88
BspT107I GGYRCC 1 cut(s) 219
BspTNI GGTCTC 1 cut(s) 724
BsrDI GCAATG 2 cut(s) 520, 700
BsrFI RCCGGY 1 cut(s) 204
BsrI ACTGG 1 cut(s) 351
BssAI RCCGGY 1 cut(s) 204
BssECI CCNNGG 4 cut(s) 99, 223, 827, 918
BssMI GATC 3 cut(s) 68, 193, 791
BssT1I CCWWGG 3 cut(s) 99, 223, 918
Bst2UI CCWGG 2 cut(s) 385, 829
Bst4CI ACNGT 4 cut(s) 35, 521, 598, 819
Bst6I CTCTTC 2 cut(s) 88, 741
BstAPI GCANNNNNTGC 2 cut(s) 581, 785
BstBAI YACGTR 1 cut(s) 785
BstC8I GCNNGC 5 cut(s) 218, 334, 438, 691, 925
BstDEI CTNAG 2 cut(s) 478, 976
BstDSI CCRYGG 1 cut(s) 223
BstF5I GGATG 2 cut(s) 236, 750
BstFNI CGCG 2 cut(s) 716, 1089
BstHHI GCGC 2 cut(s) 172, 716
BstKTI GATC 3 cut(s) 71, 196, 794
BstMAI GTCTC 2 cut(s) 83, 724
BstMBI GATC 3 cut(s) 68, 193, 791
BstMWI GCNNNNNNNGC 6 cut(s) 12, 167, 437, 581, 690, 785
BstNI CCWGG 2 cut(s) 385, 829
BstNSI RCATGY 1 cut(s) 931
BstSCI CCNGG 2 cut(s) 383, 827
BstUI CGCG 2 cut(s) 716, 1089
BstV1I GCAGC 3 cut(s) 476, 618, 1027
BstV2I GAAGAC 3 cut(s) 526, 692, 813
BstX2I RGATCY 1 cut(s) 791
BstXI CCANNNNNNTGG 1 cut(s) 559
BstYI RGATCY 1 cut(s) 791
BsuRI GGCC 2 cut(s) 336, 525
BtgI CCRYGG 1 cut(s) 223
BtsCI GGATG 2 cut(s) 236, 750
BtsI GCAGTG 1 cut(s) 582
BtsIMutI CAGTG 1 cut(s) 582
Cac8I GCNNGC 5 cut(s) 218, 334, 438, 691, 925
CciI TCATGA 1 cut(s) 546
CfoI GCGC 2 cut(s) 172, 716
Cfr10I RCCGGY 1 cut(s) 204
Cfr13I GGNCC 2 cut(s) 957, 1056
Csp6I GTAC 2 cut(s) 729, 772
CspCI CAANNNNNGTGG 2 cut(s) 502, 537
CviAII CATG 8 cut(s) 105, 139, 224, 274, 547, 553, 928, 940
CviQI GTAC 2 cut(s) 729, 772
DdeI CTNAG 2 cut(s) 478, 976
DpnI GATC 3 cut(s) 70, 195, 793
DpnII GATC 3 cut(s) 68, 193, 791
DraIII CACNNNGTG 1 cut(s) 1029
Eam1104I CTCTTC 2 cut(s) 88, 741
EarI CTCTTC 2 cut(s) 88, 741
Ecl136II GAGCTC 1 cut(s) 975
Eco130I CCWWGG 3 cut(s) 99, 223, 918
Eco147I AGGCCT 1 cut(s) 336
Eco24I GRGCYC 1 cut(s) 977
Eco31I GGTCTC 1 cut(s) 724
Eco47I GGWCC 2 cut(s) 957, 1056
Eco53kI GAGCTC 1 cut(s) 975
EcoICRI GAGCTC 1 cut(s) 975
EcoRII CCWGG 2 cut(s) 383, 827
EcoT14I CCWWGG 3 cut(s) 99, 223, 918
EcoT38I GRGCYC 1 cut(s) 977
ErhI CCWWGG 3 cut(s) 99, 223, 918
FaeI CATG 8 cut(s) 108, 142, 227, 277, 550, 556, 931, 943
FalI AAGNNNNNCTT 2 cut(s) 111, 143
FaqI GGGAC 1 cut(s) 1042
FatI CATG 8 cut(s) 104, 138, 223, 273, 546, 552, 927, 939
Fnu4HI GCNGC 4 cut(s) 13, 465, 607, 1041
FokI GGATG 2 cut(s) 243, 757
FriOI GRGCYC 1 cut(s) 977
Fsp4HI GCNGC 4 cut(s) 13, 465, 607, 1041
FspBI CTAG 4 cut(s) 66, 368, 924, 1096
GlaI GCGC 2 cut(s) 171, 715
GluI GCNGC 4 cut(s) 13, 465, 607, 1041
GsuI CTGGAG 1 cut(s) 694
HaeIII GGCC 2 cut(s) 336, 525
HapII CCGG 1 cut(s) 205
HhaI GCGC 2 cut(s) 172, 716
Hin1II CATG 8 cut(s) 108, 142, 227, 277, 550, 556, 931, 943
Hin6I GCGC 2 cut(s) 170, 714
HinP1I GCGC 2 cut(s) 170, 714
HinfI GANTC 3 cut(s) 91, 556, 1017
HpaII CCGG 1 cut(s) 205
HphI GGTGA 9 cut(s) 38, 54, 65, 145, 610, 695, 760, 804, 816
Hpy188I TCNGA 3 cut(s) 88, 970, 979
Hpy188III TCNNGA 2 cut(s) 287, 547
HpyAV CCTTC 3 cut(s) 184, 623, 839
HpyCH4III ACNGT 4 cut(s) 35, 521, 598, 819
HpyCH4IV ACGT 2 cut(s) 784, 990
HpyCH4V TGCA 8 cut(s) 464, 569, 575, 584, 693, 779, 1023, 1043
HpyF10VI GCNNNNNNNGC 6 cut(s) 12, 167, 437, 581, 690, 785
HpyF3I CTNAG 2 cut(s) 478, 976
HpySE526I ACGT 2 cut(s) 784, 990
Hsp92II CATG 8 cut(s) 108, 142, 227, 277, 550, 556, 931, 943
HspAI GCGC 2 cut(s) 170, 714
Kzo9I GATC 3 cut(s) 68, 193, 791
LguI GCTCTTC 1 cut(s) 88
LmnI GCTCC 1 cut(s) 1072
Lsp1109I GCAGC 3 cut(s) 476, 618, 1027
LweI GCATC 1 cut(s) 382
MaeI CTAG 4 cut(s) 66, 368, 924, 1096
MaeII ACGT 2 cut(s) 784, 990
MaeIII GTNAC 5 cut(s) 26, 53, 748, 810, 1033
MalI GATC 3 cut(s) 70, 195, 793
MboI GATC 3 cut(s) 68, 193, 791
MfeI CAATTG 1 cut(s) 447
MflI RGATCY 1 cut(s) 791
MhlI GDGCHC 1 cut(s) 977
MluCI AATT 3 cut(s) 145, 323, 447
MlyI GAGTC 1 cut(s) 85
MmeI TCCRAC 2 cut(s) 819, 935
MnlI CCTC 5 cut(s) 40, 43, 66, 517, 620
MseI TTAA 1 cut(s) 528
MslI CAYNNNNRTG 4 cut(s) 225, 272, 545, 551
MspI CCGG 1 cut(s) 205
MspR9I CCNGG 2 cut(s) 385, 829
MunI CAATTG 1 cut(s) 447
Mva1269I GAATGC 1 cut(s) 483
MvaI CCWGG 2 cut(s) 385, 829
MvnI CGCG 2 cut(s) 716, 1089
MwoI GCNNNNNNNGC 6 cut(s) 12, 167, 437, 581, 690, 785
NcoI CCATGG 1 cut(s) 223
NdeII GATC 3 cut(s) 68, 193, 791
NheI GCTAGC 1 cut(s) 923
NlaIII CATG 8 cut(s) 108, 142, 227, 277, 550, 556, 931, 943
NlaIV GGNNCC 2 cut(s) 221, 1058
NmuCI GTSAC 4 cut(s) 26, 53, 748, 810
NspI RCATGY 1 cut(s) 931
OliI CACNNNNGTG 1 cut(s) 225
PagI TCATGA 1 cut(s) 546
PceI AGGCCT 1 cut(s) 336
PciSI GCTCTTC 1 cut(s) 88
PctI GAATGC 1 cut(s) 483
PfeI GAWTC 2 cut(s) 556, 1017
PflFI GACNNNGTC 1 cut(s) 293
PflMI CCANNNNNTGG 1 cut(s) 105
PfoI TCCNGGA 1 cut(s) 383
PkrI GCNGC 4 cut(s) 14, 466, 608, 1042
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
Ppu21I YACGTR 1 cut(s) 785
PsiI TTATAA 1 cut(s) 176
Psp124BI GAGCTC 1 cut(s) 977
Psp6I CCWGG 2 cut(s) 383, 827
PspGI CCWGG 2 cut(s) 383, 827
PspN4I GGNNCC 2 cut(s) 221, 1058
PspPI GGNCC 2 cut(s) 957, 1056
PsuI RGATCY 1 cut(s) 791
PsyI GACNNNGTC 1 cut(s) 293
RsaI GTAC 2 cut(s) 730, 773
RsaNI GTAC 2 cut(s) 729, 772
RseI CAYNNNNRTG 4 cut(s) 225, 272, 545, 551
SacI GAGCTC 1 cut(s) 977
SapI GCTCTTC 1 cut(s) 88
SaqAI TTAA 1 cut(s) 528
SatI GCNGC 4 cut(s) 13, 465, 607, 1041
Sau3AI GATC 3 cut(s) 68, 193, 791
Sau96I GGNCC 2 cut(s) 957, 1056
ScaI AGTACT 1 cut(s) 730
SchI GAGTC 1 cut(s) 85
ScrFI CCNGG 2 cut(s) 385, 829
SduI GDGCHC 1 cut(s) 977
SfaNI GCATC 1 cut(s) 382
SinI GGWCC 2 cut(s) 957, 1056
SmiMI CAYNNNNRTG 4 cut(s) 225, 272, 545, 551
Sse9I AATT 3 cut(s) 145, 323, 447
SseBI AGGCCT 1 cut(s) 336
SsiI CCGC 5 cut(s) 6, 12, 122, 716, 1087
SspMI CTAG 4 cut(s) 66, 368, 924, 1096
SstI GAGCTC 1 cut(s) 977
StuI AGGCCT 1 cut(s) 336
StyD4I CCNGG 2 cut(s) 383, 827
StyI CCWWGG 3 cut(s) 99, 223, 918
TaaI ACNGT 4 cut(s) 35, 521, 598, 819
TaiI ACGT 2 cut(s) 787, 993
TaqI TCGA 2 cut(s) 71, 196
TasI AATT 3 cut(s) 145, 323, 447
TatI WGTACW 2 cut(s) 728, 771
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 2 cut(s) 556, 1017
Tru1I TTAA 1 cut(s) 528
Tru9I TTAA 1 cut(s) 528
TscAI CASTG 1 cut(s) 582
TseFI GTSAC 4 cut(s) 26, 53, 748, 810
TseI GCWGC 3 cut(s) 464, 606, 1040
Tsp45I GTSAC 4 cut(s) 26, 53, 748, 810
TspDTI ATGAA 4 cut(s) 426, 481, 529, 876
TspGWI ACGGA 1 cut(s) 324
TspRI CASTG 1 cut(s) 582
Tth111I GACNNNGTC 1 cut(s) 293
Van91I CCANNNNNTGG 1 cut(s) 105
VpaK11BI GGWCC 2 cut(s) 957, 1056
XapI RAATTY 2 cut(s) 145, 323
XceI RCATGY 1 cut(s) 931
XcmI CCANNNNNNNNNTGG 1 cut(s) 835
XspI CTAG 4 cut(s) 66, 368, 924, 1096
ZrmI AGTACT 1 cut(s) 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.