Rh4CG226300

Serine incorporator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0011082
Physical Location & Seq
Forward (+)
46345732 .. 46349415
3684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG226300.1

Sequence Viewer

Length: 960 bp
ATGTCGTGCTTGTGCTCTTGCTGCAGCGCTTCCACTTGCGGCCTCTGCTCCTCCGTGGCCTCCGGGATTTCCAGCAAATCCGCGAGACTCGGGTACTGCGGCCTCTTCGGGCTTTCCTTGGTCGTCACTTGGATTCTTAGAGAAGTTGGAGCTCCTCTCTTGGAGAAAATCCCATGGATAAGCTCTTCCGAGACTCACACCAAGGCATGGTATCAAATACAAGCGGTTCTTCGGGTGAGCATGGGGAATTTCTTGTTTTTTGCGATACTTGCGCTTATAATGATTGGTGTGAAGGATCGAAATGACCGACGAGATGGCTGGCAACATGGTGGATGGATTGCCAAGATGGTCATCTGGCTTTTGCTTGTCATTCTCATGTTTTTTCTTCCAGACATTGTCATCACAATCTACGGAGATATATCAAAATTTGGGGCAGGCCTGTTTTTACTGGTTCAAGTGATTATCTTACTAGACTTTACTCACTCCTGGAATGATGCATGGGTGGAGAAAGATGAACAAAAATGGTATATCGCTTTGCTTGCTATATCAATTGGGTGCTATATTGCAGCATTTGTGTTCTTAGGCATTCTGTTCATTTGGTTCAATCCCTCTGGCAATGACTGTGGCCTTAATGTCTTCTTCATTGTCATGACCATGATTCTGGCATTTGCATTTGCAGTGATTGCATTACACCCAACGGTGAATGGCAGCCTCCTTCCTGCTTCTGTTATATCAGTATATTGTGCTTATGTGTGCTACACGGCTCTTTCCTGTGAGCCTGTTGGCTATGCTTGCAATGGTCTTCACCACTCCAGCGCGGTCTCTTTTAGTACTACTCTTCTTGGGATGGTGATGACCATTCTTTCAGTTCTGTACTCTGCATTACGTGCTGGATCTTCAACAACTTTTCTGTCACCACCGTCTTCACCCAGGACAGGTACTCAAAATAAACTTTTTTAG

Protein Analysis

319

Amino Acids

34.86

Weight (kDa)

7.93

Isoelectric Point (pI)

32.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Serinc PF03348 6 - 309 3.9e-86 Serine incorporator (Serinc)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 278
AccB7I CCANNNNNTGG 1 cut(s) 207
AccII CGCG 2 cut(s) 83, 818
AciI CCGC 5 cut(s) 39, 81, 99, 224, 818
AclWI GGATC 2 cut(s) 303, 901
AcsI RAATTY 2 cut(s) 247, 425
AfaI GTAC 4 cut(s) 95, 832, 875, 940
AfeI AGCGCT 1 cut(s) 28
AfiI CCNNNNNNNGG 2 cut(s) 207, 935
AgsI TTSAA 3 cut(s) 455, 604, 900
AjnI CCWGG 2 cut(s) 485, 929
AluBI AGCT 2 cut(s) 152, 183
AluI AGCT 2 cut(s) 152, 183
Alw21I GWGCWC 2 cut(s) 17, 154
Alw26I GTCTC 3 cut(s) 79, 185, 826
AlwI GGATC 2 cut(s) 303, 901
Ama87I CYCGRG 1 cut(s) 89
Aor51HI AGCGCT 1 cut(s) 28
AoxI GGCC 5 cut(s) 40, 57, 100, 436, 625
ApeKI GCWGC 4 cut(s) 21, 24, 566, 708
ApoI RAATTY 2 cut(s) 247, 425
AspLEI GCGC 3 cut(s) 29, 274, 818
AsuC2I CCSGG 1 cut(s) 64
AsuHPI GGTGA 6 cut(s) 247, 712, 797, 862, 906, 918
AvaI CYCGRG 1 cut(s) 89
BanII GRGCYC 1 cut(s) 154
BbsI GAAGAC 3 cut(s) 628, 794, 915
Bbv12I GWGCWC 2 cut(s) 17, 154
BbvI GCAGC 4 cut(s) 8, 36, 578, 720
BccI CCATC 4 cut(s) 308, 327, 340, 841
BceAI ACGGC 1 cut(s) 777
BciT130I CCWGG 2 cut(s) 487, 931
BcnI CCSGG 1 cut(s) 64
BcoDI GTCTC 3 cut(s) 79, 185, 826
BfaI CTAG 1 cut(s) 470
BfmI CTRYAG 1 cut(s) 22
BfoI RGCGCY 1 cut(s) 30
BisI GCNGC 6 cut(s) 22, 25, 40, 100, 567, 709
BlsI GCNGC 6 cut(s) 23, 26, 41, 101, 568, 710
BmcAI AGTACT 1 cut(s) 832
Bme1390I CCNGG 3 cut(s) 64, 487, 931
BmeT110I CYCGRG 1 cut(s) 89
BmrFI CCNGG 3 cut(s) 64, 487, 931
BmsI GCATC 1 cut(s) 484
BpiI GAAGAC 3 cut(s) 628, 794, 915
BplI GAGNNNNNCTC 2 cut(s) 141, 173
BpmI CTGGAG 1 cut(s) 796
BpuMI CCSGG 1 cut(s) 64
BsaAI YACGTR 1 cut(s) 887
BsaBI GATNNNNATC 1 cut(s) 350
BsaI GGTCTC 1 cut(s) 826
BsaJI CCNNGG 5 cut(s) 54, 117, 173, 201, 929
Bsc4I CCNNNNNNNGG 2 cut(s) 207, 935
Bse1I ACTGG 1 cut(s) 453
Bse3DI GCAATG 2 cut(s) 622, 802
Bse8I GATNNNNATC 1 cut(s) 350
BseBI CCWGG 2 cut(s) 487, 931
BseDI CCNNGG 5 cut(s) 54, 117, 173, 201, 929
BseGI GGATG 2 cut(s) 338, 852
BseJI GATNNNNATC 1 cut(s) 350
BseLI CCNNNNNNNGG 2 cut(s) 207, 935
BseMI GCAATG 2 cut(s) 622, 802
BseNI ACTGG 1 cut(s) 453
BseRI GAGGAG 2 cut(s) 40, 144
BseXI GCAGC 4 cut(s) 8, 36, 578, 720
Bsh1236I CGCG 2 cut(s) 83, 818
BshFI GGCC 5 cut(s) 42, 59, 102, 438, 627
BsiHKAI GWGCWC 2 cut(s) 17, 154
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 1 cut(s) 63
BslI CCNNNNNNNGG 2 cut(s) 207, 935
BsmAI GTCTC 3 cut(s) 79, 185, 826
BsmI GAATGC 1 cut(s) 585
BsnI GGCC 5 cut(s) 42, 59, 102, 438, 627
Bso31I GGTCTC 1 cut(s) 826
BsoBI CYCGRG 1 cut(s) 89
Bsp1286I GDGCHC 2 cut(s) 17, 154
Bsp143I GATC 2 cut(s) 295, 893
Bsp19I CCATGG 1 cut(s) 173
BspACI CCGC 5 cut(s) 39, 81, 99, 224, 818
BspANI GGCC 5 cut(s) 42, 59, 102, 438, 627
BspFNI CGCG 2 cut(s) 83, 818
BspHI TCATGA 1 cut(s) 648
BspMAI CTGCAG 1 cut(s) 26
BspPI GGATC 2 cut(s) 303, 901
BspQI GCTCTTC 1 cut(s) 190
BspTNI GGTCTC 1 cut(s) 826
BsrDI GCAATG 2 cut(s) 622, 802
BsrI ACTGG 1 cut(s) 453
BssECI CCNNGG 5 cut(s) 54, 117, 173, 201, 929
BssMI GATC 2 cut(s) 295, 893
BssT1I CCWWGG 3 cut(s) 117, 173, 201
Bst2UI CCWGG 2 cut(s) 487, 931
Bst4CI ACNGT 3 cut(s) 623, 700, 921
Bst6I CTCTTC 3 cut(s) 110, 190, 843
BstAPI GCANNNNNTGC 2 cut(s) 683, 887
BstBAI YACGTR 1 cut(s) 887
BstC8I GCNNGC 4 cut(s) 320, 436, 540, 793
BstDEI CTNAG 2 cut(s) 137, 580
BstDSI CCRYGG 2 cut(s) 54, 173
BstF5I GGATG 2 cut(s) 338, 852
BstFNI CGCG 2 cut(s) 83, 818
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 3 cut(s) 29, 274, 818
BstKTI GATC 2 cut(s) 298, 896
BstMAI GTCTC 3 cut(s) 79, 185, 826
BstMBI GATC 2 cut(s) 295, 893
BstMWI GCNNNNNNNGC 7 cut(s) 21, 45, 269, 539, 683, 792, 887
BstNI CCWGG 2 cut(s) 487, 931
BstSCI CCNGG 3 cut(s) 62, 485, 929
BstSFI CTRYAG 1 cut(s) 22
BstUI CGCG 2 cut(s) 83, 818
BstV1I GCAGC 4 cut(s) 8, 36, 578, 720
BstV2I GAAGAC 3 cut(s) 628, 794, 915
BstX2I RGATCY 1 cut(s) 893
BstXI CCANNNNNNTGG 1 cut(s) 661
BstYI RGATCY 1 cut(s) 893
BsuRI GGCC 5 cut(s) 42, 59, 102, 438, 627
BtgI CCRYGG 2 cut(s) 54, 173
BtsCI GGATG 2 cut(s) 338, 852
BtsI GCAGTG 1 cut(s) 684
BtsIMutI CAGTG 1 cut(s) 684
Cac8I GCNNGC 4 cut(s) 320, 436, 540, 793
CciI TCATGA 1 cut(s) 648
CfoI GCGC 3 cut(s) 29, 274, 818
Csp6I GTAC 4 cut(s) 94, 831, 874, 939
CspCI CAANNNNNGTGG 2 cut(s) 604, 639
CviAII CATG 8 cut(s) 174, 207, 241, 326, 376, 498, 649, 655
CviQI GTAC 4 cut(s) 94, 831, 874, 939
DdeI CTNAG 2 cut(s) 137, 580
DpnI GATC 2 cut(s) 297, 895
DpnII GATC 2 cut(s) 295, 893
Eam1104I CTCTTC 3 cut(s) 110, 190, 843
EarI CTCTTC 3 cut(s) 110, 190, 843
Ecl136II GAGCTC 1 cut(s) 152
Eco130I CCWWGG 3 cut(s) 117, 173, 201
Eco147I AGGCCT 1 cut(s) 438
Eco24I GRGCYC 1 cut(s) 154
Eco31I GGTCTC 1 cut(s) 826
Eco47III AGCGCT 1 cut(s) 28
Eco53kI GAGCTC 1 cut(s) 152
Eco88I CYCGRG 1 cut(s) 89
EcoICRI GAGCTC 1 cut(s) 152
EcoRII CCWGG 2 cut(s) 485, 929
EcoT14I CCWWGG 3 cut(s) 117, 173, 201
EcoT22I ATGCAT 1 cut(s) 499
EcoT38I GRGCYC 1 cut(s) 154
ErhI CCWWGG 3 cut(s) 117, 173, 201
FaeI CATG 8 cut(s) 177, 210, 244, 329, 379, 501, 652, 658
FalI AAGNNNNNCTT 2 cut(s) 213, 245
FatI CATG 8 cut(s) 173, 206, 240, 325, 375, 497, 648, 654
Fnu4HI GCNGC 6 cut(s) 22, 25, 40, 100, 567, 709
FokI GGATG 2 cut(s) 345, 859
FriOI GRGCYC 1 cut(s) 154
Fsp4HI GCNGC 6 cut(s) 22, 25, 40, 100, 567, 709
FspBI CTAG 1 cut(s) 470
GlaI GCGC 3 cut(s) 28, 273, 817
GluI GCNGC 6 cut(s) 22, 25, 40, 100, 567, 709
GsuI CTGGAG 1 cut(s) 796
HaeII RGCGCY 1 cut(s) 30
HaeIII GGCC 5 cut(s) 42, 59, 102, 438, 627
HapII CCGG 1 cut(s) 63
HhaI GCGC 3 cut(s) 29, 274, 818
Hin1II CATG 8 cut(s) 177, 210, 244, 329, 379, 501, 652, 658
Hin6I GCGC 3 cut(s) 27, 272, 816
HinP1I GCGC 3 cut(s) 27, 272, 816
HinfI GANTC 4 cut(s) 87, 133, 193, 658
HpaII CCGG 1 cut(s) 63
HphI GGTGA 6 cut(s) 247, 712, 797, 862, 906, 918
Hpy188I TCNGA 1 cut(s) 190
Hpy188III TCNNGA 2 cut(s) 389, 649
Hpy99I CGWCG 1 cut(s) 312
HpyAV CCTTC 2 cut(s) 286, 725
HpyCH4III ACNGT 3 cut(s) 623, 700, 921
HpyCH4IV ACGT 1 cut(s) 886
HpyCH4V TGCA 8 cut(s) 24, 497, 566, 671, 677, 686, 795, 881
HpyF10VI GCNNNNNNNGC 7 cut(s) 21, 45, 269, 539, 683, 792, 887
HpyF3I CTNAG 2 cut(s) 137, 580
HpySE526I ACGT 1 cut(s) 886
Hsp92II CATG 8 cut(s) 177, 210, 244, 329, 379, 501, 652, 658
HspAI GCGC 3 cut(s) 27, 272, 816
Kzo9I GATC 2 cut(s) 295, 893
LguI GCTCTTC 1 cut(s) 190
LmnI GCTCC 3 cut(s) 53, 149, 157
Lsp1109I GCAGC 4 cut(s) 8, 36, 578, 720
LweI GCATC 1 cut(s) 484
MaeI CTAG 1 cut(s) 470
MaeII ACGT 1 cut(s) 886
MaeIII GTNAC 2 cut(s) 124, 912
MalI GATC 2 cut(s) 297, 895
MboI GATC 2 cut(s) 295, 893
MfeI CAATTG 1 cut(s) 549
MflI RGATCY 1 cut(s) 893
MhlI GDGCHC 2 cut(s) 17, 154
MluCI AATT 3 cut(s) 247, 425, 549
MlyI GAGTC 2 cut(s) 81, 187
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 7 cut(s) 53, 61, 70, 113, 165, 619, 722
Mph1103I ATGCAT 1 cut(s) 499
MseI TTAA 1 cut(s) 630
MslI CAYNNNNRTG 3 cut(s) 374, 647, 653
MspI CCGG 1 cut(s) 63
MspR9I CCNGG 3 cut(s) 64, 487, 931
MunI CAATTG 1 cut(s) 549
Mva1269I GAATGC 1 cut(s) 585
MvaI CCWGG 2 cut(s) 487, 931
MvnI CGCG 2 cut(s) 83, 818
MwoI GCNNNNNNNGC 7 cut(s) 21, 45, 269, 539, 683, 792, 887
NciI CCSGG 1 cut(s) 64
NcoI CCATGG 1 cut(s) 173
NdeII GATC 2 cut(s) 295, 893
NlaIII CATG 8 cut(s) 177, 210, 244, 329, 379, 501, 652, 658
NmuCI GTSAC 2 cut(s) 124, 912
NsiI ATGCAT 1 cut(s) 499
PagI TCATGA 1 cut(s) 648
PceI AGGCCT 1 cut(s) 438
PciSI GCTCTTC 1 cut(s) 190
PcsI WCGNNNNNNNCGW 1 cut(s) 304
PctI GAATGC 1 cut(s) 585
PfeI GAWTC 2 cut(s) 133, 658
PflFI GACNNNGTC 1 cut(s) 395
PflMI CCANNNNNTGG 1 cut(s) 207
PfoI TCCNGGA 2 cut(s) 62, 485
PkrI GCNGC 6 cut(s) 23, 26, 41, 101, 568, 710
PleI GAGTC 2 cut(s) 81, 187
PpsI GAGTC 2 cut(s) 81, 187
Ppu21I YACGTR 1 cut(s) 887
PsiI TTATAA 1 cut(s) 278
Psp124BI GAGCTC 1 cut(s) 154
Psp6I CCWGG 2 cut(s) 485, 929
PspGI CCWGG 2 cut(s) 485, 929
PstI CTGCAG 1 cut(s) 26
PsuI RGATCY 1 cut(s) 893
PsyI GACNNNGTC 1 cut(s) 395
RsaI GTAC 4 cut(s) 95, 832, 875, 940
RsaNI GTAC 4 cut(s) 94, 831, 874, 939
RseI CAYNNNNRTG 3 cut(s) 374, 647, 653
SacI GAGCTC 1 cut(s) 154
SapI GCTCTTC 1 cut(s) 190
SaqAI TTAA 1 cut(s) 630
SatI GCNGC 6 cut(s) 22, 25, 40, 100, 567, 709
Sau3AI GATC 2 cut(s) 295, 893
ScaI AGTACT 1 cut(s) 832
SchI GAGTC 2 cut(s) 81, 187
ScrFI CCNGG 3 cut(s) 64, 487, 931
SduI GDGCHC 2 cut(s) 17, 154
SetI ASST 4 cut(s) 154, 185, 889, 940
SfaNI GCATC 1 cut(s) 484
SfcI CTRYAG 1 cut(s) 22
SmiMI CAYNNNNRTG 3 cut(s) 374, 647, 653
Sse9I AATT 3 cut(s) 247, 425, 549
SseBI AGGCCT 1 cut(s) 438
SsiI CCGC 5 cut(s) 39, 81, 99, 224, 818
SspMI CTAG 1 cut(s) 470
SstI GAGCTC 1 cut(s) 154
StuI AGGCCT 1 cut(s) 438
StyD4I CCNGG 3 cut(s) 62, 485, 929
StyI CCWWGG 3 cut(s) 117, 173, 201
TaaI ACNGT 3 cut(s) 623, 700, 921
TaiI ACGT 1 cut(s) 889
TaqI TCGA 1 cut(s) 298
TaqII GACCGA 1 cut(s) 321
TasI AATT 3 cut(s) 247, 425, 549
TatI WGTACW 2 cut(s) 830, 873
TauI GCSGC 2 cut(s) 42, 102
TfiI GAWTC 2 cut(s) 133, 658
Tru1I TTAA 1 cut(s) 630
Tru9I TTAA 1 cut(s) 630
TscAI CASTG 1 cut(s) 684
TseFI GTSAC 2 cut(s) 124, 912
TseI GCWGC 4 cut(s) 21, 24, 566, 708
Tsp45I GTSAC 2 cut(s) 124, 912
TspDTI ATGAA 3 cut(s) 528, 583, 631
TspGWI ACGGA 2 cut(s) 43, 426
TspRI CASTG 1 cut(s) 684
Tth111I GACNNNGTC 1 cut(s) 395
Van91I CCANNNNNTGG 1 cut(s) 207
XapI RAATTY 2 cut(s) 247, 425
XspI CTAG 1 cut(s) 470
ZrmI AGTACT 1 cut(s) 832
Zsp2I ATGCAT 1 cut(s) 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.