Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010833

Physical Location & Seq

Genomic Coordinates Reverse (-)

1954990 .. 1956397

Gene Structure 1408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G06420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGGGATTGTTGTCAAGTCTTTCAAGGATCAATTCTCCTCTGATGAGAGATTGAAGGAGTCGAACAACATCATTGCGAAATATCCAGATAGAATACCTGTGATCATTGAGAAATATTCAAACGCAGATCTGCCAGACATGGAGAAGAACAAATACTTGGTCCCACGAGACATGACTGTTGGACATTTCATCCATATGCTAAGCAAAAGGATGCAGTTAGATCCATCCAAAGCTCTCTTTGTTTTCGTACACAACACTCTTCCTCAAACCGCTAGTCGCATGGACTCTCTCTACAATACTTTCAAGGAAGAAGACGGGTTCTTGTACATGTGCTACAGCACCGAGAAAACTTTCGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0006995 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042594 GO:0043562 GO:0050896 GO:0051716 GO:0071496

KEGG Pathways

Metabolic & Signaling

ko04068 ko04136 ko04137 ko04138 ko04139 ko04140 ko04212 ko04371 ko04621 ko04727 ko05167 map04068 map04136 map04137 map04138 map04139 map04140 map04212 map04371 map04621 map04727 map05167

Pfam Domains

Protein Families

Atg8

Protein Analysis

119

Amino Acids

13.88

Weight (kDa)

6.83

Isoelectric Point (pI)

41.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATG8	PF02991	16 - 119	2e-48	Autophagy protein Atg8 ubiquitin like
APG12	PF04110	41 - 119	2.3e-08	Ubiquitin-like autophagy protein Apg12

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06420
fragaria_vesca	FvH4_4g21320 FvH4_4g21320
malus_domestica	MD13G1141800.v1.1 MD16G1138400.v1.1
prunus_persica	Prupe.1G107100_v2.0.a1 Prupe.1G107100_v2.0.a1
pyrus_communis	pycom13g12340 pycom16g12230
rosa_chinensis	RchiOBHm_Chr4g0427091
rosa_laevigata	RLG00000007262
rosa_multiflora	Rmu_sc0000953.1_g000030
rosa_roxburghii	Rroxscaffold_5G00368920
rosa_rugosa	Rorug04G0215900 Rorug04G0216000
rosa_samantha	Rh4AG271700 Rh4BG277600 Rh4CG292300 Rh4DG275200
rosa_wichuraiana	Rw4G023570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	270
AclWI	GGATC	2 cut(s)	36, 215
AfaI	GTAC	2 cut(s)	249, 326
AflIII	ACRYGT	1 cut(s)	327
AgsI	TTSAA	4 cut(s)	25, 55, 120, 304
AjuI	GAANNNNNNNTTGG	2 cut(s)	140, 172
AluBI	AGCT	1 cut(s)	233
AluI	AGCT	1 cut(s)	233
Alw26I	GTCTC	1 cut(s)	162
AlwI	GGATC	2 cut(s)	36, 215
ArsI	GACNNNNNNTTYG	4 cut(s)	144, 176, 259, 291
Asp700I	GAANNNNTTC	1 cut(s)	350
AspS9I	GGNCC	1 cut(s)	160
AvaII	GGWCC	1 cut(s)	160
BarI	GAAGNNNNNNTAC	2 cut(s)	137, 169
BauI	CACGAG	1 cut(s)	165
BbsI	GAAGAC	1 cut(s)	318
BccI	CCATC	1 cut(s)	232
BclI	TGATCA	1 cut(s)	102
BcoDI	GTCTC	1 cut(s)	162
BfaI	CTAG	1 cut(s)	273
BfmI	CTRYAG	1 cut(s)	334
BglII	AGATCT	1 cut(s)	127
BlpI	GCTNAGC	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	162
BmsI	GCATC	1 cut(s)	201
BpiI	GAAGAC	1 cut(s)	318
Bpu1102I	GCTNAGC	1 cut(s)	200
Bse3DI	GCAATG	1 cut(s)	72
BseGI	GGATG	3 cut(s)	189, 216, 224
BseMI	GCAATG	1 cut(s)	72
BseRI	GAGGAG	1 cut(s)	28
BslFI	GGGAC	1 cut(s)	146
BsmAI	GTCTC	1 cut(s)	162
BsmFI	GGGAC	1 cut(s)	146
Bsp1407I	TGTACA	1 cut(s)	324
Bsp143I	GATC	4 cut(s)	28, 102, 127, 220
Bsp1720I	GCTNAGC	1 cut(s)	200
BspACI	CCGC	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	162
BspPI	GGATC	2 cut(s)	36, 215
BsrDI	GCAATG	1 cut(s)	72
BsrGI	TGTACA	1 cut(s)	324
BssMI	GATC	4 cut(s)	28, 102, 127, 220
BssSI	CACGAG	1 cut(s)	165
Bst2BI	CACGAG	1 cut(s)	165
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	1 cut(s)	264
BstAUI	TGTACA	1 cut(s)	324
BstDEI	CTNAG	1 cut(s)	200
BstF5I	GGATG	3 cut(s)	189, 216, 224
BstKTI	GATC	4 cut(s)	31, 105, 130, 223
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	4 cut(s)	28, 102, 127, 220
BstNSI	RCATGY	1 cut(s)	331
BstSFI	CTRYAG	1 cut(s)	334
BstV2I	GAAGAC	1 cut(s)	318
BstX2I	RGATCY	2 cut(s)	127, 220
BstYI	RGATCY	2 cut(s)	127, 220
BtsCI	GGATG	3 cut(s)	189, 216, 224
Cfr13I	GGNCC	1 cut(s)	160
Csp6I	GTAC	2 cut(s)	248, 325
CviAII	CATG	4 cut(s)	139, 172, 280, 328
CviJI	RGCY	2 cut(s)	233, 357
CviKI_1	RGCY	2 cut(s)	233, 357
CviQI	GTAC	2 cut(s)	248, 325
DdeI	CTNAG	1 cut(s)	200
DpnI	GATC	4 cut(s)	30, 104, 129, 222
DpnII	GATC	4 cut(s)	28, 102, 127, 220
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	160
FaeI	CATG	4 cut(s)	142, 175, 283, 331
FaiI	YATR	6 cut(s)	140, 173, 195, 197, 281, 329
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	4 cut(s)	138, 171, 279, 327
FauNDI	CATATG	1 cut(s)	195
FbaI	TGATCA	1 cut(s)	102
FokI	GGATG	3 cut(s)	176, 211, 223
FspBI	CTAG	1 cut(s)	273
Hin1II	CATG	4 cut(s)	142, 175, 283, 331
HinfI	GANTC	2 cut(s)	59, 284
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	1 cut(s)	43
Hpy188III	TCNNGA	1 cut(s)	86
Hpy8I	GTNNAC	1 cut(s)	250
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4V	TGCA	1 cut(s)	214
HpyF3I	CTNAG	1 cut(s)	200
Hsp92II	CATG	4 cut(s)	142, 175, 283, 331
Ksp22I	TGATCA	1 cut(s)	102
Kzo9I	GATC	4 cut(s)	28, 102, 127, 220
LpnPI	CCDG	3 cut(s)	99, 111, 147
LweI	GCATC	1 cut(s)	201
MaeI	CTAG	1 cut(s)	273
MalI	GATC	4 cut(s)	30, 104, 129, 222
MboI	GATC	4 cut(s)	28, 102, 127, 220
MboII	GAAGA	4 cut(s)	157, 251, 320, 323
MflI	RGATCY	2 cut(s)	127, 220
MluCI	AATT	1 cut(s)	32
MlyI	GAGTC	2 cut(s)	68, 278
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	2 cut(s)	49, 273
MroXI	GAANNNNTTC	1 cut(s)	350
MslI	CAYNNNNRTG	1 cut(s)	194
NdeI	CATATG	1 cut(s)	195
NdeII	GATC	4 cut(s)	28, 102, 127, 220
NlaIII	CATG	4 cut(s)	142, 175, 283, 331
NlaIV	GGNNCC	1 cut(s)	162
NspI	RCATGY	1 cut(s)	331
PciI	ACATGT	1 cut(s)	327
PdmI	GAANNNNTTC	1 cut(s)	350
PleI	GAGTC	2 cut(s)	67, 278
PpsI	GAGTC	2 cut(s)	67, 278
PscI	ACATGT	1 cut(s)	327
PspN4I	GGNNCC	1 cut(s)	162
PspPI	GGNCC	1 cut(s)	160
PsuI	RGATCY	2 cut(s)	127, 220
RsaI	GTAC	2 cut(s)	249, 326
RsaNI	GTAC	2 cut(s)	248, 325
RseI	CAYNNNNRTG	1 cut(s)	194
Sau3AI	GATC	4 cut(s)	28, 102, 127, 220
Sau96I	GGNCC	1 cut(s)	160
SchI	GAGTC	2 cut(s)	68, 278
SetI	ASST	2 cut(s)	100, 235
SfaNI	GCATC	1 cut(s)	201
SfcI	CTRYAG	1 cut(s)	334
SinI	GGWCC	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	194
Sse9I	AATT	1 cut(s)	32
SsiI	CCGC	1 cut(s)	270
SspI	AATATT	1 cut(s)	116
SspMI	CTAG	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	178
TaqI	TCGA	1 cut(s)	62
TasI	AATT	1 cut(s)	32
TatI	WGTACW	1 cut(s)	324
TspDTI	ATGAA	1 cut(s)	178
VpaK11BI	GGWCC	1 cut(s)	160
XceI	RCATGY	1 cut(s)	331
XmnI	GAANNNNTTC	1 cut(s)	350
XspI	CTAG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.