Rroxscaffold_5G00368920

Autophagy-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0010833
Physical Location & Seq
Reverse (-)
50636096 .. 50638096
2001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00368920.1

Sequence Viewer

Length: 375 bp
ATGGGCAAGATCAAGTCTTTCAAGCAGGAGTTCTCTTTCGATGAGCGTCTTGAAGAATCAAAGAACATCATTGGAAAATACCCAGATCGAGTTCCAGTTATCATTGAAAGATATTCGAGGACAGACCTGCCTGAAATGGAAAAGAAAAATTTGGTGAAGATCCAAAAATACCTGGTTCCTAGAGATATGTCTGTTGGCCAGTTTATCCATATTTTAAGCAGCCGGCTTCAACTGACTCCTGGGAAAGCGCTTTTTGTATTTGTGAAGAACACATTACCTCAAACAGCAAGTCGTATGGATTCCATTTACGAAAGTTACAAGGAAGATGATGGATTTCTGTATATGTGTTACAGCAGCGAGAAAACCTTTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04068 ko04136 ko04137 ko04138 ko04139 ko04140 ko04212 ko04371 ko04621 ko04727 ko05167 map04068 map04136 map04137 map04138 map04139 map04140 map04212 map04371 map04621 map04727 map05167
Pfam Domains
Protein Families
Atg8

Protein Analysis

124

Amino Acids

14.53

Weight (kDa)

8.92

Isoelectric Point (pI)

57.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATG8 PF02991 15 - 124 2.2e-42 Autophagy protein Atg8 ubiquitin like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010833)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06420
fragaria_vesca FvH4_4g21320 FvH4_4g21320
malus_domestica MD13G1141800.v1.1 MD16G1138400.v1.1
prunus_persica Prupe.1G107100_v2.0.a1 Prupe.1G107100_v2.0.a1
pyrus_communis pycom13g12340 pycom16g12230
rosa_chinensis RchiOBHm_Chr4g0427091
rosa_laevigata RLG00000007262
rosa_multiflora Rmu_sc0000953.1_g000030
rosa_roxburghii Rroxscaffold_5G00368920
rosa_rugosa Rorug04G0215900 Rorug04G0216000
rosa_samantha Rh4AG271700 Rh4BG277600 Rh4CG292300 Rh4DG275200
rosa_wichuraiana Rw4G023570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 135
AclWI GGATC 1 cut(s) 154
AcoI YGGCCR 1 cut(s) 196
AcsI RAATTY 1 cut(s) 148
AfeI AGCGCT 1 cut(s) 249
AgsI TTSAA 4 cut(s) 22, 53, 107, 230
AjnI CCWGG 2 cut(s) 171, 238
AlwI GGATC 1 cut(s) 154
Aor51HI AGCGCT 1 cut(s) 249
AoxI GGCC 1 cut(s) 196
ApeKI GCWGC 2 cut(s) 219, 354
ApoI RAATTY 1 cut(s) 148
ArsI GACNNNNNNTTYG 2 cut(s) 274, 306
AspLEI GCGC 1 cut(s) 250
AsuHPI GGTGA 1 cut(s) 166
BalI TGGCCA 1 cut(s) 198
BbvI GCAGC 2 cut(s) 231, 366
BccI CCATC 1 cut(s) 323
BciT130I CCWGG 2 cut(s) 173, 240
BfaI CTAG 1 cut(s) 180
BfoI RGCGCY 1 cut(s) 251
BfuAI ACCTGC 1 cut(s) 135
BisI GCNGC 2 cut(s) 220, 355
BlsI GCNGC 2 cut(s) 221, 356
Bme1390I CCNGG 2 cut(s) 173, 240
BmiI GGNNCC 1 cut(s) 177
BmrFI CCNGG 2 cut(s) 173, 240
BsaJI CCNNGG 1 cut(s) 239
Bse118I RCCGGY 1 cut(s) 222
Bse1I ACTGG 2 cut(s) 95, 199
BseBI CCWGG 2 cut(s) 173, 240
BseDI CCNNGG 1 cut(s) 239
BseNI ACTGG 2 cut(s) 95, 199
BseXI GCAGC 2 cut(s) 231, 366
BshFI GGCC 1 cut(s) 198
BsiSI CCGG 1 cut(s) 223
BsnI GGCC 1 cut(s) 198
Bsp143I GATC 3 cut(s) 9, 85, 159
BspANI GGCC 1 cut(s) 198
BspLI GGNNCC 1 cut(s) 177
BspMI ACCTGC 1 cut(s) 135
BspPI GGATC 1 cut(s) 154
BsrFI RCCGGY 1 cut(s) 222
BsrI ACTGG 2 cut(s) 95, 199
BssAI RCCGGY 1 cut(s) 222
BssECI CCNNGG 1 cut(s) 239
BssMI GATC 3 cut(s) 9, 85, 159
Bst2UI CCWGG 2 cut(s) 173, 240
BstC8I GCNNGC 1 cut(s) 224
BstH2I RGCGCY 1 cut(s) 251
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 3 cut(s) 12, 88, 162
BstMBI GATC 3 cut(s) 9, 85, 159
BstNI CCWGG 2 cut(s) 173, 240
BstSCI CCNGG 2 cut(s) 171, 238
BstV1I GCAGC 2 cut(s) 231, 366
BstX2I RGATCY 1 cut(s) 159
BstYI RGATCY 1 cut(s) 159
BsuRI GGCC 1 cut(s) 198
BveI ACCTGC 1 cut(s) 135
Cac8I GCNNGC 1 cut(s) 224
CfoI GCGC 1 cut(s) 250
Cfr10I RCCGGY 1 cut(s) 222
CseI GACGC 1 cut(s) 35
CsiI ACCWGGT 1 cut(s) 171
CviJI RGCY 4 cut(s) 198, 222, 226, 372
CviKI_1 RGCY 4 cut(s) 198, 222, 226, 372
DpnI GATC 3 cut(s) 11, 87, 161
DpnII GATC 3 cut(s) 9, 85, 159
EaeI YGGCCR 1 cut(s) 196
Eco47III AGCGCT 1 cut(s) 249
EcoRII CCWGG 2 cut(s) 171, 238
FaiI YATR 5 cut(s) 188, 210, 296, 342, 344
Fnu4HI GCNGC 2 cut(s) 220, 355
Fsp4HI GCNGC 2 cut(s) 220, 355
FspBI CTAG 1 cut(s) 180
GlaI GCGC 1 cut(s) 249
GluI GCNGC 2 cut(s) 220, 355
HaeII RGCGCY 1 cut(s) 251
HaeIII GGCC 1 cut(s) 198
HapII CCGG 1 cut(s) 223
HgaI GACGC 1 cut(s) 35
HhaI GCGC 1 cut(s) 250
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HinfI GANTC 3 cut(s) 56, 235, 299
HpaII CCGG 1 cut(s) 223
HphI GGTGA 1 cut(s) 166
Hpy188III TCNNGA 1 cut(s) 50
HspAI GCGC 1 cut(s) 248
KroI GCCGGC 1 cut(s) 222
KroNI GCCGGC 1 cut(s) 224
Kzo9I GATC 3 cut(s) 9, 85, 159
Lsp1109I GCAGC 2 cut(s) 231, 366
MabI ACCWGGT 1 cut(s) 171
MaeI CTAG 1 cut(s) 180
MaeIII GTNAC 2 cut(s) 314, 347
MalI GATC 3 cut(s) 11, 87, 161
MboI GATC 3 cut(s) 9, 85, 159
MboII GAAGA 4 cut(s) 65, 169, 277, 335
MflI RGATCY 1 cut(s) 159
MlsI TGGCCA 1 cut(s) 198
MluCI AATT 1 cut(s) 148
MluNI TGGCCA 1 cut(s) 198
MlyI GAGTC 1 cut(s) 229
MnlI CCTC 2 cut(s) 111, 288
Mox20I TGGCCA 1 cut(s) 198
MroNI GCCGGC 1 cut(s) 222
MscI TGGCCA 1 cut(s) 198
MseI TTAA 1 cut(s) 215
Msp20I TGGCCA 1 cut(s) 198
MspI CCGG 1 cut(s) 223
MspR9I CCNGG 2 cut(s) 173, 240
MvaI CCWGG 2 cut(s) 173, 240
NaeI GCCGGC 1 cut(s) 224
NdeII GATC 3 cut(s) 9, 85, 159
NgoMIV GCCGGC 1 cut(s) 222
NlaIV GGNNCC 1 cut(s) 177
PdiI GCCGGC 1 cut(s) 224
PfeI GAWTC 2 cut(s) 56, 299
PkrI GCNGC 2 cut(s) 221, 356
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
Psp6I CCWGG 2 cut(s) 171, 238
PspGI CCWGG 2 cut(s) 171, 238
PspN4I GGNNCC 1 cut(s) 177
PsuI RGATCY 1 cut(s) 159
SaqAI TTAA 1 cut(s) 215
SatI GCNGC 2 cut(s) 220, 355
Sau3AI GATC 3 cut(s) 9, 85, 159
SchI GAGTC 1 cut(s) 229
ScrFI CCNGG 2 cut(s) 173, 240
SetI ASST 4 cut(s) 129, 174, 280, 368
SexAI ACCWGGT 1 cut(s) 171
Sse9I AATT 1 cut(s) 148
SspMI CTAG 1 cut(s) 180
StyD4I CCNGG 2 cut(s) 171, 238
TaqI TCGA 3 cut(s) 39, 88, 116
TasI AATT 1 cut(s) 148
TfiI GAWTC 2 cut(s) 56, 299
Tru1I TTAA 1 cut(s) 215
Tru9I TTAA 1 cut(s) 215
TseI GCWGC 2 cut(s) 219, 354
XapI RAATTY 1 cut(s) 148
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.